ZRdb KZFP & Repeats
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SINE_ALUYH7

  • Name
    ALUYH7
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    0.0 Mya
  • Dfam Id
    DF0001321
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggcagaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacgcggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtggtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgaggtcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF560 10 43.0 Weakly correlated
2 ZNF723 4 15.2 Weakly correlated
3 ZNF709 4 87.0 Weakly correlated
4 ZNF441 4 43.0 Weakly correlated
5 ZNF382 4 99.0 Weakly correlated
6 ZNF257 3 0.0 Highly correlated
7 ZKSCAN1 2 160.0 Weakly correlated
8 ZNF263 2 180.0 Weakly correlated
9 ZFP57 2 87.0 Weakly correlated
10 ZNF251 1 94.0 Weakly correlated
11 ZNF334 1 99.0 Weakly correlated
12 ZNF202 1 160.0 Weakly correlated
13 ZNF18 1 160.0 Weakly correlated
14 ZNF461 1 99.0 Weakly correlated
15 ZNF554 1 99.0 Weakly correlated
16 ZNF558 1 99.0 Weakly correlated
17 ZNF182 1 99.0 Weakly correlated
18 ZNF671 1 94.0 Weakly correlated
19 ZNF680 1 28.9 Weakly correlated
20 ZNF695 1 28.9 Weakly correlated
21 ZNF705B 1 28.9 Weakly correlated
22 ZNF160 1 74.0 Weakly correlated
23 ZNF786 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 4 43.0 Weakly correlated
2 ZNF182 1 99.0 Weakly correlated
3 ZNF334 1 99.0 Weakly correlated
4 ZNF461 1 99.0 Weakly correlated
5 ZNF18 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats