ZRdb KZFP & Repeats
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SINE_ALUYH3

  • Name
    ALUYH3
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0001318
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggcagaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgcctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 146 43.0 Weakly correlated
2 ZNF18 95 160.0 Weakly correlated
3 ZNF284 94 43.0 Weakly correlated
4 ZNF394 88 99.0 Weakly correlated
5 ZNF382 46 99.0 Weakly correlated
6 ZNF101 33 43.0 Weakly correlated
7 ZNF182 28 99.0 Weakly correlated
8 ZNF257 24 0.0 Weakly correlated
9 ZNF140 21 99.0 Weakly correlated
10 ZNF680 21 28.9 Weakly correlated
11 ZNF2 20 99.0 Weakly correlated
12 ZNF766 19 43.0 Weakly correlated
13 ZNF202 17 160.0 Weakly correlated
14 ZFP37 15 99.0 Weakly correlated
15 ZNF519 15 19.6 Weakly correlated
16 ZNF558 12 99.0 Weakly correlated
17 ZNF705B 12 28.9 Weakly correlated
18 ZNF589 11 28.9 Weakly correlated
19 ZFP69B 10 99.0 Weakly correlated
20 ZNF263 10 180.0 Weakly correlated
21 ZNF274 10 99.0 Weakly correlated
22 ZNF506 10 28.9 Weakly correlated
23 ZNF317 9 99.0 Weakly correlated
24 ZNF610 9 28.9 Weakly correlated
25 ZKSCAN8 8 160.0 Weakly correlated
26 ZNF175 8 94.0 Weakly correlated
27 ZFP57 7 87.0 Weakly correlated
28 ZIM3 7 87.0 Weakly correlated
29 ZNF585B 7 99.0 Weakly correlated
30 ZNF695 7 28.9 Weakly correlated
31 ZNF324 6 99.0 Weakly correlated
32 ZNF479 6 6.4 Moderately correlated
33 ZNF534 6 19.6 Weakly correlated
34 ZNF251 5 94.0 Weakly correlated
35 ZNF287 5 99.0 Weakly correlated
36 ZNF547 5 74.0 Weakly correlated
37 ZNF584 5 99.0 Weakly correlated
38 ZNF705D 5 28.9 Weakly correlated
39 ZNF786 5 99.0 Weakly correlated
40 ZKSCAN1 4 160.0 Weakly correlated
41 ZNF197 4 99.0 Weakly correlated
42 ZNF528 4 43.0 Weakly correlated
43 ZNF616 4 43.0 Weakly correlated
44 ZNF679 4 28.9 Weakly correlated
45 ZNF723 4 15.2 Highly correlated
46 ZNF264 3 99.0 Weakly correlated
47 ZNF273 3 28.9 Weakly correlated
48 ZNF354A 3 99.0 Weakly correlated
49 ZNF460 3 74.0 Weakly correlated
50 ZNF490 3 43.0 Weakly correlated
51 ZNF730 3 19.6 Weakly correlated
52 ZNF75D 3 94.0 Weakly correlated
53 ZNF792 3 94.0 Weakly correlated
54 ZKSCAN5 2 160.0 Weakly correlated
55 ZNF160 2 74.0 Weakly correlated
56 ZNF282 2 319.0 Weakly correlated
57 ZNF334 2 99.0 Weakly correlated
58 ZNF429 2 28.9 Weakly correlated
59 ZNF43 2 43.0 Weakly correlated
60 ZNF461 2 99.0 Weakly correlated
61 ZNF486 2 8.6 Moderately correlated
62 ZNF548 2 94.0 Weakly correlated
63 ZNF585A 2 99.0 Weakly correlated
64 ZNF671 2 94.0 Weakly correlated
65 ZNF778 2 74.0 Weakly correlated
66 ZNF879 2 99.0 Weakly correlated
67 ZNF92 2 28.9 Weakly correlated
68 ZFP69 1 99.0 Weakly correlated
69 ZFP82 1 99.0 Weakly correlated
70 ZNF100 1 28.9 Weakly correlated
71 ZNF124 1 43.0 Weakly correlated
72 ZNF136 1 74.0 Weakly correlated
73 ZNF141 1 43.0 Weakly correlated
74 ZNF154 1 94.0 Weakly correlated
75 ZNF157 1 99.0 Weakly correlated
76 ZNF189 1 99.0 Weakly correlated
77 ZNF26 1 99.0 Weakly correlated
78 ZNF28 1 28.9 Weakly correlated
79 ZNF304 1 99.0 Weakly correlated
80 ZNF320 1 28.9 Weakly correlated
81 ZNF425 1 94.0 Weakly correlated
82 ZNF440 1 28.9 Weakly correlated
83 ZNF454 1 99.0 Weakly correlated
84 ZNF471 1 94.0 Weakly correlated
85 ZNF484 1 99.0 Weakly correlated
86 ZNF485 1 94.0 Weakly correlated
87 ZNF530 1 28.9 Weakly correlated
88 ZNF543 1 99.0 Weakly correlated
89 ZNF549 1 87.0 Weakly correlated
90 ZNF554 1 99.0 Weakly correlated
91 ZNF560 1 43.0 Weakly correlated
92 ZNF561 1 43.0 Weakly correlated
93 ZNF562 1 28.9 Weakly correlated
94 ZNF573 1 94.0 Weakly correlated
95 ZNF586 1 43.0 Weakly correlated
96 ZNF587 1 28.9 Weakly correlated
97 ZNF596 1 94.0 Weakly correlated
98 ZNF597 1 94.0 Weakly correlated
99 ZNF605 1 99.0 Weakly correlated
100 ZNF611 1 19.6 Weakly correlated
101 ZNF627 1 74.0 Weakly correlated
102 ZNF641 1 99.0 Weakly correlated
103 ZNF649 1 28.9 Weakly correlated
104 ZNF684 1 99.0 Weakly correlated
105 ZNF689 1 99.0 Weakly correlated
106 ZNF707 1 74.0 Weakly correlated
107 ZNF776 1 43.0 Weakly correlated
108 ZNF77 1 87.0 Weakly correlated
109 ZNF780A 1 43.0 Weakly correlated
110 ZNF7 1 99.0 Weakly correlated
111 ZNF808 1 19.6 Weakly correlated
112 ZNF823 1 43.0 Weakly correlated
113 ZNF84 1 99.0 Weakly correlated
114 ZNF878 1 43.0 Weakly correlated
115 ZNF8 1 99.0 Weakly correlated
116 ZNF91 1 6.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 138 43.0 Weakly correlated
2 ZNF284 84 43.0 Weakly correlated
3 ZNF18 59 160.0 Weakly correlated
4 ZNF182 26 99.0 Weakly correlated
5 ZNF101 23 43.0 Weakly correlated
6 ZNF257 20 0.0 Weakly correlated
7 ZNF140 19 99.0 Weakly correlated
8 ZNF394 14 99.0 Weakly correlated
9 ZNF519 13 19.6 Weakly correlated
10 ZNF202 10 160.0 Weakly correlated
11 ZNF786 5 99.0 Weakly correlated
12 ZNF287 5 99.0 Weakly correlated
13 ZNF616 4 43.0 Weakly correlated
14 ZNF506 4 28.9 Weakly correlated
15 ZNF695 3 28.9 Weakly correlated
16 ZNF460 3 74.0 Weakly correlated
17 ZNF610 3 28.9 Weakly correlated
18 ZNF585A 2 99.0 Weakly correlated
19 ZNF792 2 94.0 Weakly correlated
20 ZNF461 2 99.0 Weakly correlated
21 ZNF264 2 99.0 Weakly correlated
22 ZFP57 2 87.0 Weakly correlated
23 ZFP37 2 99.0 Weakly correlated
24 ZNF780A 1 43.0 Weakly correlated
25 ZNF334 1 99.0 Weakly correlated
26 ZNF776 1 43.0 Weakly correlated
27 ZNF705D 1 28.9 Weakly correlated
28 ZKSCAN5 1 160.0 Weakly correlated
29 ZNF100 1 28.9 Weakly correlated
30 ZNF141 1 43.0 Weakly correlated
31 ZNF273 1 28.9 Weakly correlated
32 ZNF317 1 99.0 Weakly correlated
33 ZNF560 1 43.0 Weakly correlated
34 ZNF324 1 99.0 Weakly correlated
35 ZNF587 1 28.9 Weakly correlated
36 ZNF382 1 99.0 Weakly correlated
37 ZNF641 1 99.0 Weakly correlated
38 ZNF429 1 28.9 Weakly correlated
39 ZNF543 1 99.0 Weakly correlated
40 ZNF705B 1 28.9 Weakly correlated
41 ZNF808 1 19.6 Weakly correlated
42 ZNF823 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated