ZRdb KZFP & Repeats
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SINE_ALUYG6

  • Name
    ALUYG6
  • Repbase
    AluYg6
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000634
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaanttagccgggcatggtggcgcgcgcctgtagtcccagctacacgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagtcgagatcgcgccactgcactccagcctgggcgacagagcgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 90 43.0 Weakly correlated
2 ZNF394 12 99.0 Weakly correlated
3 ZFP37 8 99.0 Weakly correlated
4 ZNF382 8 99.0 Weakly correlated
5 ZNF202 7 160.0 Weakly correlated
6 ZNF558 6 99.0 Weakly correlated
7 ZNF705B 5 28.9 Weakly correlated
8 ZNF461 5 99.0 Weakly correlated
9 ZNF2 5 99.0 Weakly correlated
10 ZNF18 4 160.0 Weakly correlated
11 ZNF486 4 8.6 Moderately correlated
12 ZNF324 4 99.0 Weakly correlated
13 ZNF705D 4 28.9 Weakly correlated
14 ZNF723 3 15.2 Highly correlated
15 ZNF766 3 43.0 Weakly correlated
16 ZNF585B 3 99.0 Weakly correlated
17 ZNF506 2 28.9 Weakly correlated
18 ZNF101 2 43.0 Weakly correlated
19 ZNF84 2 99.0 Weakly correlated
20 ZKSCAN1 2 160.0 Weakly correlated
21 ZNF140 2 99.0 Weakly correlated
22 ZNF680 2 28.9 Weakly correlated
23 ZNF284 2 43.0 Weakly correlated
24 ZNF182 2 99.0 Weakly correlated
25 ZFP69B 2 99.0 Weakly correlated
26 ZNF585A 1 99.0 Weakly correlated
27 ZNF586 1 43.0 Weakly correlated
28 ZNF793 1 99.0 Weakly correlated
29 ZNF674 1 99.0 Weakly correlated
30 ZNF589 1 28.9 Weakly correlated
31 ZNF610 1 28.9 Weakly correlated
32 ZNF845 1 28.9 Weakly correlated
33 ZNF641 1 99.0 Weakly correlated
34 ZNF675 1 8.6 Moderately correlated
35 ZNF786 1 99.0 Weakly correlated
36 ZNF679 1 28.9 Weakly correlated
37 ZNF878 1 43.0 Weakly correlated
38 ZNF707 1 74.0 Weakly correlated
39 ZNF730 1 19.6 Weakly correlated
40 ZNF75D 1 94.0 Weakly correlated
41 ZNF287 1 99.0 Weakly correlated
42 ZFP57 1 87.0 Weakly correlated
43 ZKSCAN5 1 160.0 Weakly correlated
44 ZKSCAN8 1 160.0 Weakly correlated
45 ZNF189 1 99.0 Weakly correlated
46 ZNF197 1 99.0 Weakly correlated
47 ZNF222 1 43.0 Weakly correlated
48 ZNF251 1 94.0 Weakly correlated
49 ZNF254 1 43.0 Weakly correlated
50 ZNF257 1 0.0 Weakly correlated
51 ZNF263 1 180.0 Weakly correlated
52 ZNF274 1 99.0 Weakly correlated
53 ZNF554 1 99.0 Weakly correlated
54 ZNF28 1 28.9 Weakly correlated
55 ZNF317 1 99.0 Weakly correlated
56 ZNF333 1 99.0 Weakly correlated
57 ZNF343 1 74.0 Weakly correlated
58 ZNF347 1 43.0 Weakly correlated
59 ZNF41 1 99.0 Weakly correlated
60 ZNF425 1 94.0 Weakly correlated
61 ZNF445 1 99.0 Weakly correlated
62 ZNF460 1 74.0 Weakly correlated
63 ZNF479 1 6.4 Moderately correlated
64 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 81 43.0 Weakly correlated
2 ZNF202 6 160.0 Weakly correlated
3 ZNF461 5 99.0 Weakly correlated
4 ZNF18 3 160.0 Weakly correlated
5 ZNF101 2 43.0 Weakly correlated
6 ZNF140 2 99.0 Weakly correlated
7 ZNF394 2 99.0 Weakly correlated
8 ZNF506 2 28.9 Weakly correlated
9 ZNF284 2 43.0 Weakly correlated
10 ZNF182 2 99.0 Weakly correlated
11 ZNF585A 1 99.0 Weakly correlated
12 ZNF287 1 99.0 Weakly correlated
13 ZNF723 1 15.2 Highly correlated
14 ZNF641 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats