ZRdb KZFP & Repeats
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SINE_ALUYF1

  • Name
    ALUYF1
  • Repbase
    AluYf1
  • Type
    SINE
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0001317
Description :

Intermediate between AluY and AluYf4. Identified both in human andgibbon.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgaggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 124 43.0 Weakly correlated
2 ZNF18 87 160.0 Weakly correlated
3 ZNF284 57 43.0 Weakly correlated
4 ZNF394 53 99.0 Weakly correlated
5 ZNF382 47 99.0 Weakly correlated
6 ZNF2 26 99.0 Weakly correlated
7 ZNF257 21 0.0 Weakly correlated
8 ZFP37 19 99.0 Weakly correlated
9 ZFP69B 18 99.0 Weakly correlated
10 ZNF182 18 99.0 Weakly correlated
11 ZNF324 16 99.0 Weakly correlated
12 ZNF558 16 99.0 Weakly correlated
13 ZNF101 15 43.0 Weakly correlated
14 ZNF460 14 74.0 Weakly correlated
15 ZNF202 13 160.0 Weakly correlated
16 ZNF610 12 28.9 Weakly correlated
17 ZKSCAN1 10 160.0 Weakly correlated
18 ZNF680 9 28.9 Weakly correlated
19 ZNF766 9 43.0 Weakly correlated
20 ZNF519 8 19.6 Highly correlated
21 ZNF287 8 99.0 Weakly correlated
22 ZNF534 7 19.6 Highly correlated
23 ZNF705B 7 28.9 Weakly correlated
24 ZNF317 7 99.0 Weakly correlated
25 ZIM3 7 87.0 Weakly correlated
26 ZNF792 6 94.0 Weakly correlated
27 ZNF695 6 28.9 Weakly correlated
28 ZNF679 5 28.9 Weakly correlated
29 ZNF547 5 74.0 Weakly correlated
30 ZNF786 5 99.0 Weakly correlated
31 ZFP57 5 87.0 Weakly correlated
32 ZNF671 4 94.0 Weakly correlated
33 ZNF506 4 28.9 Weakly correlated
34 ZNF334 4 99.0 Weakly correlated
35 ZNF263 4 180.0 Weakly correlated
36 ZNF92 3 28.9 Weakly correlated
37 ZNF707 3 74.0 Weakly correlated
38 ZNF705D 3 28.9 Weakly correlated
39 ZNF723 3 15.2 Moderately correlated
40 ZNF135 3 94.0 Weakly correlated
41 ZNF616 3 43.0 Weakly correlated
42 ZNF251 3 94.0 Weakly correlated
43 ZNF264 3 99.0 Weakly correlated
44 ZNF486 3 8.6 Moderately correlated
45 ZNF8 3 99.0 Weakly correlated
46 ZNF479 3 6.4 Moderately correlated
47 ZNF845 2 28.9 Weakly correlated
48 ZNF425 2 94.0 Weakly correlated
49 ZNF140 2 99.0 Weakly correlated
50 ZNF682 2 28.9 Weakly correlated
51 ZNF175 2 94.0 Weakly correlated
52 ZNF641 2 99.0 Weakly correlated
53 ZNF230 2 28.9 Weakly correlated
54 ZNF597 2 94.0 Weakly correlated
55 ZNF589 2 28.9 Weakly correlated
56 ZNF585A 2 99.0 Weakly correlated
57 ZNF567 2 99.0 Weakly correlated
58 ZNF778 1 74.0 Weakly correlated
59 ZKSCAN2 1 180.0 Weakly correlated
60 ZNF765 1 8.6 Moderately correlated
61 ZNF763 1 15.2 Moderately correlated
62 ZFP90 1 99.0 Weakly correlated
63 ZNF75D 1 94.0 Weakly correlated
64 ZNF84 1 99.0 Weakly correlated
65 ZNF735 1 28.9 Weakly correlated
66 ZNF91 1 6.0 Moderately correlated
67 ZNF793 1 99.0 Weakly correlated
68 ZNF81 1 99.0 Weakly correlated
69 ZNF189 1 99.0 Weakly correlated
70 ZNF701 1 28.9 Weakly correlated
71 ZNF160 1 74.0 Weakly correlated
72 ZNF169 1 94.0 Weakly correlated
73 ZNF675 1 8.6 Moderately correlated
74 ZNF354C 1 99.0 Weakly correlated
75 ZNF66 1 0.0 Weakly correlated
76 ZNF568 1 99.0 Weakly correlated
77 ZNF566 1 99.0 Weakly correlated
78 ZNF563 1 28.9 Weakly correlated
79 ZNF543 1 99.0 Weakly correlated
80 ZNF274 1 99.0 Weakly correlated
81 ZFP30 1 99.0 Weakly correlated
82 ZNF485 1 94.0 Weakly correlated
83 ZNF28 1 28.9 Weakly correlated
84 ZNF445 1 99.0 Weakly correlated
85 ZNF354A 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 120 43.0 Weakly correlated
2 ZNF284 54 43.0 Weakly correlated
3 ZNF18 47 160.0 Weakly correlated
4 ZNF257 19 0.0 Weakly correlated
5 ZNF182 18 99.0 Weakly correlated
6 ZNF460 13 74.0 Weakly correlated
7 ZNF394 12 99.0 Weakly correlated
8 ZNF101 10 43.0 Weakly correlated
9 ZNF202 9 160.0 Weakly correlated
10 ZNF610 8 28.9 Weakly correlated
11 ZFP37 8 99.0 Weakly correlated
12 ZNF287 7 99.0 Weakly correlated
13 ZNF519 6 19.6 Highly correlated
14 ZNF786 5 99.0 Weakly correlated
15 ZNF695 5 28.9 Weakly correlated
16 ZNF792 4 94.0 Weakly correlated
17 ZNF506 4 28.9 Weakly correlated
18 ZNF616 3 43.0 Weakly correlated
19 ZNF334 3 99.0 Weakly correlated
20 ZNF534 3 19.6 Highly correlated
21 ZNF641 2 99.0 Weakly correlated
22 ZNF264 2 99.0 Weakly correlated
23 ZNF140 2 99.0 Weakly correlated
24 ZNF324 2 99.0 Weakly correlated
25 ZNF671 2 94.0 Weakly correlated
26 ZNF2 1 99.0 Weakly correlated
27 ZNF445 1 99.0 Weakly correlated
28 ZNF135 1 94.0 Weakly correlated
29 ZNF563 1 28.9 Weakly correlated
30 ZNF91 1 6.0 Moderately correlated
31 ZNF705D 1 28.9 Weakly correlated
32 ZNF425 1 94.0 Weakly correlated
33 ZIM3 1 87.0 Weakly correlated
34 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF287 99.0 Weakly correlated