ZRdb KZFP & Repeats
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SINE_ALUYE6

  • Name
    ALUYE6
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0001174
Description :

Derived by coseg. Previously reported as AluYf5. Renamed to AluYelineage.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgaggtggcgggcgcctgtagtcccagctacgcgggaggctgaggcaggagaatggcgtgaaccccggggggcggagcctgcagtgagccgagatcgcgccactgcactccagcctgggcgacagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 8 43.0 Weakly correlated
2 ZNF18 6 160.0 Weakly correlated
3 ZNF441 5 43.0 Weakly correlated
4 ZNF202 5 160.0 Weakly correlated
5 ZNF182 4 99.0 Weakly correlated
6 ZNF680 4 28.9 Weakly correlated
7 ZFP57 3 87.0 Weakly correlated
8 ZNF2 3 99.0 Weakly correlated
9 ZNF610 2 28.9 Weakly correlated
10 ZNF519 2 19.6 Weakly correlated
11 ZNF558 2 99.0 Weakly correlated
12 ZNF479 2 6.4 Weakly correlated
13 ZNF317 2 99.0 Weakly correlated
14 ZNF605 1 99.0 Weakly correlated
15 ZNF324 1 99.0 Weakly correlated
16 ZNF705B 1 28.9 Weakly correlated
17 ZNF705D 1 28.9 Weakly correlated
18 ZNF75D 1 94.0 Weakly correlated
19 ZNF92 1 28.9 Weakly correlated
20 ZNF534 1 19.6 Weakly correlated
21 ZNF514 1 94.0 Weakly correlated
22 ZNF257 1 0.0 Weakly correlated
23 ZNF251 1 94.0 Weakly correlated
24 ZNF230 1 28.9 Weakly correlated
25 ZNF141 1 43.0 Weakly correlated
26 ZNF136 1 74.0 Highly correlated
27 ZNF133 1 99.0 Weakly correlated
28 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 6 43.0 Weakly correlated
2 ZNF202 5 160.0 Weakly correlated
3 ZNF441 5 43.0 Weakly correlated
4 ZNF182 4 99.0 Weakly correlated
5 ZNF18 3 160.0 Weakly correlated
6 ZFP57 1 87.0 Weakly correlated
7 ZNF610 1 28.9 Weakly correlated
8 ZNF324 1 99.0 Weakly correlated
9 ZNF519 1 19.6 Weakly correlated
10 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats