ZRdb KZFP & Repeats
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SINE_ALUYE5

  • Name
    ALUYE5
  • Repbase
    AluYe5
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0001240
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgaggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccccggggggcggagcctgcagtgagccgagatcgcgccactgcactccagcctgggcgacagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 34 43.0 Weakly correlated
2 ZNF394 34 99.0 Weakly correlated
3 ZNF441 31 43.0 Weakly correlated
4 ZNF202 27 160.0 Weakly correlated
5 ZNF18 23 160.0 Weakly correlated
6 ZNF257 20 0.0 Weakly correlated
7 ZNF382 20 99.0 Weakly correlated
8 ZNF2 15 99.0 Weakly correlated
9 ZNF101 12 43.0 Weakly correlated
10 ZFP69B 11 99.0 Weakly correlated
11 ZNF182 10 99.0 Weakly correlated
12 ZFP37 9 99.0 Weakly correlated
13 ZNF610 8 28.9 Weakly correlated
14 ZNF519 8 19.6 Weakly correlated
15 ZNF324 8 99.0 Weakly correlated
16 ZNF558 7 99.0 Weakly correlated
17 ZNF140 7 99.0 Weakly correlated
18 ZNF460 7 74.0 Highly correlated
19 ZNF766 7 43.0 Weakly correlated
20 ZIM3 7 87.0 Weakly correlated
21 ZNF589 6 28.9 Weakly correlated
22 ZNF695 6 28.9 Weakly correlated
23 ZKSCAN1 6 160.0 Weakly correlated
24 ZNF680 5 28.9 Weakly correlated
25 ZNF793 5 99.0 Weakly correlated
26 ZNF786 4 99.0 Weakly correlated
27 ZFP57 4 87.0 Weakly correlated
28 ZNF263 4 180.0 Weakly correlated
29 ZNF287 3 99.0 Weakly correlated
30 ZNF92 3 28.9 Weakly correlated
31 ZNF792 3 94.0 Weakly correlated
32 ZNF547 3 74.0 Highly correlated
33 ZNF534 3 19.6 Weakly correlated
34 ZNF189 3 99.0 Weakly correlated
35 ZNF479 3 6.4 Weakly correlated
36 ZNF28 3 28.9 Weakly correlated
37 ZNF705B 2 28.9 Weakly correlated
38 ZNF723 2 15.2 Weakly correlated
39 ZNF707 2 74.0 Highly correlated
40 ZNF585A 2 99.0 Weakly correlated
41 ZNF175 2 94.0 Weakly correlated
42 ZNF264 2 99.0 Weakly correlated
43 ZNF585B 2 99.0 Weakly correlated
44 ZNF528 2 43.0 Weakly correlated
45 ZNF705D 2 28.9 Weakly correlated
46 ZNF77 2 87.0 Weakly correlated
47 ZNF486 2 8.6 Weakly correlated
48 ZNF461 2 99.0 Weakly correlated
49 ZKSCAN2 2 180.0 Weakly correlated
50 ZNF133 2 99.0 Weakly correlated
51 ZNF84 2 99.0 Weakly correlated
52 ZNF248 2 99.0 Weakly correlated
53 ZNF251 2 94.0 Weakly correlated
54 ZNF141 1 43.0 Weakly correlated
55 ZNF700 1 28.9 Weakly correlated
56 ZNF682 1 28.9 Weakly correlated
57 ZNF597 1 94.0 Weakly correlated
58 ZNF735 1 28.9 Weakly correlated
59 ZNF75D 1 94.0 Weakly correlated
60 ZNF763 1 15.2 Weakly correlated
61 ZKSCAN8 1 160.0 Weakly correlated
62 ZKSCAN5 1 160.0 Weakly correlated
63 ZNF805 1 99.0 Weakly correlated
64 ZNF845 1 28.9 Weakly correlated
65 ZNF8 1 99.0 Weakly correlated
66 ZNF274 1 99.0 Weakly correlated
67 ZNF302 1 43.0 Weakly correlated
68 ZNF354A 1 99.0 Weakly correlated
69 ZNF354C 1 99.0 Weakly correlated
70 ZNF417 1 28.9 Weakly correlated
71 ZNF230 1 28.9 Weakly correlated
72 ZNF446 1 94.0 Weakly correlated
73 ZNF224 1 69.0 Moderately correlated
74 ZNF471 1 94.0 Weakly correlated
75 ZNF331 1 94.0 Weakly correlated
76 ZNF490 1 43.0 Weakly correlated
77 ZNF317 1 99.0 Weakly correlated
78 ZNF679 1 28.9 Weakly correlated
79 ZNF567 1 99.0 Weakly correlated
80 ZNF573 1 94.0 Weakly correlated
81 ZNF57 1 28.9 Weakly correlated
82 ZNF584 1 99.0 Weakly correlated
83 ZNF157 1 99.0 Weakly correlated
84 ZNF334 1 99.0 Weakly correlated
85 ZNF154 1 94.0 Weakly correlated
86 ZNF649 1 28.9 Weakly correlated
87 ZNF671 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 30 43.0 Weakly correlated
2 ZNF441 27 43.0 Weakly correlated
3 ZNF202 19 160.0 Weakly correlated
4 ZNF257 17 0.0 Weakly correlated
5 ZNF18 12 160.0 Weakly correlated
6 ZNF182 9 99.0 Weakly correlated
7 ZNF101 7 43.0 Weakly correlated
8 ZNF519 6 19.6 Weakly correlated
9 ZNF460 5 74.0 Highly correlated
10 ZNF140 5 99.0 Weakly correlated
11 ZNF610 4 28.9 Weakly correlated
12 ZNF695 4 28.9 Weakly correlated
13 ZFP37 3 99.0 Weakly correlated
14 ZNF394 3 99.0 Weakly correlated
15 ZNF461 2 99.0 Weakly correlated
16 ZNF585A 2 99.0 Weakly correlated
17 ZNF786 2 99.0 Weakly correlated
18 ZNF264 2 99.0 Weakly correlated
19 ZNF287 2 99.0 Weakly correlated
20 ZNF793 1 99.0 Weakly correlated
21 ZNF334 1 99.0 Weakly correlated
22 ZNF417 1 28.9 Weakly correlated
23 ZNF324 1 99.0 Weakly correlated
24 ZNF534 1 19.6 Weakly correlated
25 ZNF763 1 15.2 Weakly correlated
26 ZNF251 1 94.0 Weakly correlated
27 ZNF792 1 94.0 Weakly correlated
28 ZNF682 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated
2 ZNF18 160.0 Weakly correlated
3 ZNF441 43.0 Weakly correlated