ZRdb KZFP & Repeats
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SINE_ALUYD8

  • Name
    ALUYD8
  • Repbase
    AluYd8
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000060
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker. Formerly named AluYc5.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcagtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccggaaggcggagcttgcagtgagcggagatcgcgccacagcactcccgcctgggcgacagaacgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 41 43.0 Weakly correlated
2 ZNF382 6 99.0 Weakly correlated
3 ZNF182 4 99.0 Weakly correlated
4 ZNF317 3 99.0 Weakly correlated
5 ZNF675 3 8.6 Moderately correlated
6 ZNF202 2 160.0 Weakly correlated
7 ZNF705B 2 28.9 Weakly correlated
8 ZNF461 2 99.0 Weakly correlated
9 ZNF778 1 74.0 Weakly correlated
10 ZFP37 1 99.0 Weakly correlated
11 ZNF723 1 15.2 Highly correlated
12 ZNF705D 1 28.9 Weakly correlated
13 ZNF679 1 28.9 Weakly correlated
14 ZNF587 1 28.9 Weakly correlated
15 ZNF585B 1 99.0 Weakly correlated
16 ZNF558 1 99.0 Weakly correlated
17 ZNF547 1 74.0 Weakly correlated
18 ZNF485 1 94.0 Weakly correlated
19 ZNF394 1 99.0 Weakly correlated
20 ZNF354A 1 99.0 Weakly correlated
21 ZNF2 1 99.0 Weakly correlated
22 ZNF251 1 94.0 Weakly correlated
23 ZNF160 1 74.0 Weakly correlated
24 ZNF136 1 74.0 Weakly correlated
25 ZNF124 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 39 43.0 Weakly correlated
2 ZNF182 4 99.0 Weakly correlated
3 ZNF202 2 160.0 Weakly correlated
4 ZNF461 2 99.0 Weakly correlated
5 ZFP37 1 99.0 Weakly correlated
6 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats