ZRdb KZFP & Repeats
...

SINE_ALUYC3

  • Name
    ALUYC3
  • Repbase
    AluYc2
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000058
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker. AluYc2, AluYc3, and AluYd3a1 areidentical. Naming convention suggests AluYc2 is preferred, as seqdiffers from AluY at 2 positions.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcggagaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 46 43.0 Weakly correlated
2 ZNF284 20 43.0 Weakly correlated
3 ZNF382 17 99.0 Weakly correlated
4 ZNF394 10 99.0 Weakly correlated
5 ZNF2 8 99.0 Weakly correlated
6 ZFP69B 8 99.0 Weakly correlated
7 ZNF18 8 160.0 Weakly correlated
8 ZFP37 7 99.0 Weakly correlated
9 ZNF101 6 43.0 Weakly correlated
10 ZNF202 6 160.0 Weakly correlated
11 ZNF695 5 28.9 Weakly correlated
12 ZFP57 4 87.0 Weakly correlated
13 ZNF182 4 99.0 Weakly correlated
14 ZNF558 4 99.0 Weakly correlated
15 ZNF610 4 28.9 Weakly correlated
16 ZNF251 3 94.0 Weakly correlated
17 ZNF257 3 0.0 Weakly correlated
18 ZNF519 3 19.6 Weakly correlated
19 ZIM3 3 87.0 Weakly correlated
20 ZNF317 3 99.0 Weakly correlated
21 ZNF705B 3 28.9 Weakly correlated
22 ZNF324 2 99.0 Weakly correlated
23 ZNF705D 2 28.9 Weakly correlated
24 ZNF479 2 6.4 Weakly correlated
25 ZNF682 2 28.9 Weakly correlated
26 ZNF534 2 19.6 Weakly correlated
27 ZNF547 2 74.0 Highly correlated
28 ZNF680 2 28.9 Weakly correlated
29 ZNF766 2 43.0 Weakly correlated
30 ZNF792 2 94.0 Weakly correlated
31 ZNF707 1 74.0 Highly correlated
32 ZNF723 1 15.2 Weakly correlated
33 ZNF91 1 6.0 Weakly correlated
34 ZNF778 1 74.0 Highly correlated
35 ZNF786 1 99.0 Weakly correlated
36 ZNF681 1 28.9 Weakly correlated
37 ZNF793 1 99.0 Weakly correlated
38 ZNF808 1 19.6 Weakly correlated
39 ZNF679 1 28.9 Weakly correlated
40 ZNF641 1 99.0 Weakly correlated
41 ZNF879 1 99.0 Weakly correlated
42 ZNF8 1 99.0 Weakly correlated
43 ZNF605 1 99.0 Weakly correlated
44 ZNF597 1 94.0 Weakly correlated
45 ZNF445 1 99.0 Weakly correlated
46 ZKSCAN2 1 180.0 Weakly correlated
47 ZNF124 1 43.0 Weakly correlated
48 ZNF135 1 94.0 Weakly correlated
49 ZNF141 1 43.0 Weakly correlated
50 ZNF17 1 69.0 Moderately correlated
51 ZNF222 1 43.0 Weakly correlated
52 ZNF248 1 99.0 Weakly correlated
53 ZNF263 1 180.0 Weakly correlated
54 ZNF28 1 28.9 Weakly correlated
55 ZNF350 1 99.0 Weakly correlated
56 ZNF585B 1 99.0 Weakly correlated
57 ZNF44 1 43.0 Weakly correlated
58 ZNF460 1 74.0 Highly correlated
59 ZNF490 1 43.0 Weakly correlated
60 ZNF528 1 43.0 Weakly correlated
61 ZNF543 1 99.0 Weakly correlated
62 ZNF549 1 87.0 Weakly correlated
63 ZNF554 1 99.0 Weakly correlated
64 ZNF555 1 94.0 Weakly correlated
65 ZNF567 1 99.0 Weakly correlated
66 ZNF585A 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 47 43.0 Weakly correlated
2 ZNF284 18 43.0 Weakly correlated
3 ZNF18 6 160.0 Weakly correlated
4 ZNF182 4 99.0 Weakly correlated
5 ZNF202 4 160.0 Weakly correlated
6 ZNF610 3 28.9 Weakly correlated
7 ZNF695 3 28.9 Weakly correlated
8 ZNF519 3 19.6 Weakly correlated
9 ZNF101 2 43.0 Weakly correlated
10 ZNF257 2 0.0 Weakly correlated
11 ZNF445 1 99.0 Weakly correlated
12 ZFP57 1 87.0 Weakly correlated
13 ZNF792 1 94.0 Weakly correlated
14 ZNF641 1 99.0 Weakly correlated
15 ZNF605 1 99.0 Weakly correlated
16 ZNF543 1 99.0 Weakly correlated
17 ZNF460 1 74.0 Highly correlated
18 ZNF394 1 99.0 Weakly correlated
19 ZNF135 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats