ZRdb KZFP & Repeats
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SINE_ALUYC

  • Name
    ALUYC
  • Repbase
    AluYd2
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000057
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 298 43.0 Weakly correlated
2 ZNF284 176 43.0 Weakly correlated
3 ZNF18 134 160.0 Weakly correlated
4 ZNF382 131 99.0 Weakly correlated
5 ZNF394 112 99.0 Weakly correlated
6 ZNF2 69 99.0 Weakly correlated
7 ZNF182 48 99.0 Weakly correlated
8 ZFP69B 47 99.0 Weakly correlated
9 ZNF101 47 43.0 Weakly correlated
10 ZNF202 45 160.0 Weakly correlated
11 ZNF766 45 43.0 Weakly correlated
12 ZFP37 44 99.0 Weakly correlated
13 ZNF257 36 0.0 Weakly correlated
14 ZNF324 36 99.0 Weakly correlated
15 ZNF558 31 99.0 Weakly correlated
16 ZNF680 30 28.9 Weakly correlated
17 ZNF519 25 19.6 Weakly correlated
18 ZNF610 25 28.9 Weakly correlated
19 ZNF792 20 94.0 Weakly correlated
20 ZNF479 18 6.4 Weakly correlated
21 ZNF197 17 99.0 Weakly correlated
22 ZNF534 17 19.6 Weakly correlated
23 ZNF589 17 28.9 Weakly correlated
24 ZNF695 14 28.9 Weakly correlated
25 ZNF140 13 99.0 Weakly correlated
26 ZNF251 13 94.0 Weakly correlated
27 ZNF705B 13 28.9 Weakly correlated
28 ZIM3 12 87.0 Weakly correlated
29 ZNF723 12 15.2 Weakly correlated
30 ZNF793 12 99.0 Weakly correlated
31 ZNF175 11 94.0 Weakly correlated
32 ZNF263 11 180.0 Weakly correlated
33 ZFP57 10 87.0 Weakly correlated
34 ZKSCAN1 10 160.0 Weakly correlated
35 ZNF554 10 99.0 Weakly correlated
36 ZNF641 10 99.0 Weakly correlated
37 ZNF705D 10 28.9 Weakly correlated
38 ZNF317 9 99.0 Weakly correlated
39 ZNF445 9 99.0 Weakly correlated
40 ZNF460 9 74.0 Highly correlated
41 ZNF585B 9 99.0 Weakly correlated
42 ZNF679 9 28.9 Weakly correlated
43 ZNF786 9 99.0 Weakly correlated
44 ZKSCAN8 8 160.0 Weakly correlated
45 ZNF584 8 99.0 Weakly correlated
46 ZNF248 7 99.0 Weakly correlated
47 ZNF547 7 74.0 Highly correlated
48 ZNF707 6 74.0 Highly correlated
49 ZNF92 6 28.9 Weakly correlated
50 ZNF264 5 99.0 Weakly correlated
51 ZNF485 5 94.0 Weakly correlated
52 ZNF486 5 8.6 Weakly correlated
53 ZNF490 5 43.0 Weakly correlated
54 ZNF506 5 28.9 Weakly correlated
55 ZNF778 5 74.0 Highly correlated
56 ZNF100 4 28.9 Weakly correlated
57 ZNF287 4 99.0 Weakly correlated
58 ZNF28 4 28.9 Weakly correlated
59 ZNF429 4 28.9 Weakly correlated
60 ZNF555 4 94.0 Weakly correlated
61 ZNF682 4 28.9 Weakly correlated
62 ZNF701 4 28.9 Weakly correlated
63 ZNF823 4 43.0 Weakly correlated
64 ZNF84 4 99.0 Weakly correlated
65 ZNF878 4 43.0 Weakly correlated
66 ZFP69 3 99.0 Weakly correlated
67 ZNF334 3 99.0 Weakly correlated
68 ZNF420 3 94.0 Weakly correlated
69 ZNF440 3 28.9 Weakly correlated
70 ZNF468 3 28.9 Weakly correlated
71 ZNF585A 3 99.0 Weakly correlated
72 ZNF674 3 99.0 Weakly correlated
73 ZNF675 3 8.6 Weakly correlated
74 ZNF75D 3 94.0 Weakly correlated
75 ZNF8 3 99.0 Weakly correlated
76 ZKSCAN5 2 160.0 Weakly correlated
77 ZNF136 2 74.0 Highly correlated
78 ZNF17 2 69.0 Moderately correlated
79 ZNF189 2 99.0 Weakly correlated
80 ZNF26 2 99.0 Weakly correlated
81 ZNF274 2 99.0 Weakly correlated
82 ZNF30 2 94.0 Weakly correlated
83 ZNF320 2 28.9 Weakly correlated
84 ZNF33A 2 99.0 Weakly correlated
85 ZNF461 2 99.0 Weakly correlated
86 ZNF514 2 94.0 Weakly correlated
87 ZNF528 2 43.0 Weakly correlated
88 ZNF573 2 94.0 Weakly correlated
89 ZNF597 2 94.0 Weakly correlated
90 ZNF613 2 99.0 Weakly correlated
91 ZNF649 2 28.9 Weakly correlated
92 ZNF730 2 19.6 Weakly correlated
93 ZNF75A 2 94.0 Weakly correlated
94 ZNF808 2 19.6 Weakly correlated
95 ZNF81 2 99.0 Weakly correlated
96 ZNF879 2 99.0 Weakly correlated
97 ZKSCAN2 1 180.0 Weakly correlated
98 ZNF135 1 94.0 Weakly correlated
99 ZNF160 1 74.0 Highly correlated
100 ZNF180 1 99.0 Weakly correlated
101 ZNF184 1 99.0 Weakly correlated
102 ZNF222 1 43.0 Weakly correlated
103 ZNF273 1 28.9 Weakly correlated
104 ZNF302 1 43.0 Weakly correlated
105 ZNF350 1 99.0 Weakly correlated
106 ZNF41 1 99.0 Weakly correlated
107 ZNF425 1 94.0 Weakly correlated
108 ZNF433 1 43.0 Weakly correlated
109 ZNF439 1 8.6 Weakly correlated
110 ZNF44 1 43.0 Weakly correlated
111 ZNF454 1 99.0 Weakly correlated
112 ZNF471 1 94.0 Weakly correlated
113 ZNF543 1 99.0 Weakly correlated
114 ZNF549 1 87.0 Weakly correlated
115 ZNF557 1 15.2 Weakly correlated
116 ZNF561 1 43.0 Weakly correlated
117 ZNF568 1 99.0 Weakly correlated
118 ZNF586 1 43.0 Weakly correlated
119 ZNF671 1 94.0 Weakly correlated
120 ZNF716 1 19.6 Weakly correlated
121 ZNF735 1 28.9 Weakly correlated
122 ZNF763 1 15.2 Weakly correlated
123 ZNF789 1 99.0 Weakly correlated
124 ZNF799 1 43.0 Weakly correlated
125 ZNF813 1 28.9 Weakly correlated
126 ZNF85 1 28.9 Weakly correlated
127 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 288 43.0 Weakly correlated
2 ZNF284 166 43.0 Weakly correlated
3 ZNF18 71 160.0 Weakly correlated
4 ZNF182 41 99.0 Weakly correlated
5 ZNF202 31 160.0 Weakly correlated
6 ZNF101 30 43.0 Weakly correlated
7 ZNF257 25 0.0 Weakly correlated
8 ZNF519 21 19.6 Weakly correlated
9 ZNF792 15 94.0 Weakly correlated
10 ZNF394 15 99.0 Weakly correlated
11 ZNF140 12 99.0 Weakly correlated
12 ZNF695 11 28.9 Weakly correlated
13 ZNF641 9 99.0 Weakly correlated
14 ZNF610 9 28.9 Weakly correlated
15 ZNF445 8 99.0 Weakly correlated
16 ZFP37 7 99.0 Weakly correlated
17 ZNF460 7 74.0 Highly correlated
18 ZNF786 5 99.0 Weakly correlated
19 ZNF534 5 19.6 Weakly correlated
20 ZNF287 4 99.0 Weakly correlated
21 ZNF429 3 28.9 Weakly correlated
22 ZNF479 3 6.4 Weakly correlated
23 ZNF264 3 99.0 Weakly correlated
24 ZNF506 3 28.9 Weakly correlated
25 ZNF823 3 43.0 Weakly correlated
26 ZNF440 2 28.9 Weakly correlated
27 ZNF382 2 99.0 Weakly correlated
28 ZFP57 2 87.0 Weakly correlated
29 ZIM3 2 87.0 Weakly correlated
30 ZNF705B 2 28.9 Weakly correlated
31 ZNF461 2 99.0 Weakly correlated
32 ZNF705D 2 28.9 Weakly correlated
33 ZNF425 1 94.0 Weakly correlated
34 ZNF679 1 28.9 Weakly correlated
35 ZNF273 1 28.9 Weakly correlated
36 ZFP69B 1 99.0 Weakly correlated
37 ZKSCAN5 1 160.0 Weakly correlated
38 ZNF585B 1 99.0 Weakly correlated
39 ZNF136 1 74.0 Highly correlated
40 ZNF613 1 99.0 Weakly correlated
41 ZNF766 1 43.0 Weakly correlated
42 ZNF222 1 43.0 Weakly correlated
43 ZNF674 1 99.0 Weakly correlated
44 ZNF263 1 180.0 Weakly correlated
45 ZNF682 1 28.9 Weakly correlated
46 ZNF543 1 99.0 Weakly correlated
47 ZNF324 1 99.0 Weakly correlated
48 ZNF334 1 99.0 Weakly correlated
49 ZNF793 1 99.0 Weakly correlated
50 ZNF485 1 94.0 Weakly correlated
51 ZNF28 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF445 99.0 Weakly correlated
4 ZNF695 28.9 Weakly correlated
5 ZNF792 94.0 Weakly correlated