ZRdb KZFP & Repeats
...

SINE_ALUYB9

  • Name
    ALUYB9
  • Repbase
    AluYb9
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000056
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactggggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 13 43.0 Weakly correlated
2 ZNF461 8 99.0 Weakly correlated
3 ZNF18 6 160.0 Weakly correlated
4 ZNF558 5 99.0 Weakly correlated
5 ZNF394 4 99.0 Weakly correlated
6 ZNF382 4 99.0 Weakly correlated
7 ZFP69B 2 99.0 Weakly correlated
8 ZNF610 2 28.9 Weakly correlated
9 ZNF679 2 28.9 Weakly correlated
10 ZNF317 2 99.0 Weakly correlated
11 ZNF2 2 99.0 Weakly correlated
12 ZNF182 2 99.0 Weakly correlated
13 ZNF84 2 99.0 Weakly correlated
14 ZFP37 2 99.0 Weakly correlated
15 ZNF723 1 15.2 Highly correlated
16 ZNF786 1 99.0 Weakly correlated
17 ZNF563 1 28.9 Weakly correlated
18 ZNF8 1 99.0 Weakly correlated
19 ZNF528 1 43.0 Weakly correlated
20 ZNF506 1 28.9 Weakly correlated
21 ZNF486 1 8.6 Moderately correlated
22 ZNF485 1 94.0 Weakly correlated
23 ZNF471 1 94.0 Weakly correlated
24 ZNF460 1 74.0 Weakly correlated
25 ZNF324 1 99.0 Weakly correlated
26 ZNF284 1 43.0 Weakly correlated
27 ZNF157 1 99.0 Weakly correlated
28 ZNF101 1 43.0 Weakly correlated
29 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 11 43.0 Weakly correlated
2 ZNF461 8 99.0 Weakly correlated
3 ZNF18 3 160.0 Weakly correlated
4 ZNF182 2 99.0 Weakly correlated
5 ZFP37 1 99.0 Weakly correlated
6 ZNF610 1 28.9 Weakly correlated
7 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF461 99.0 Weakly correlated