ZRdb KZFP & Repeats
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SINE_ALUYB8

  • Name
    ALUYB8
  • Repbase
    AluYb8
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000055
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 149 43.0 Weakly correlated
2 ZNF461 46 99.0 Weakly correlated
3 ZNF382 40 99.0 Weakly correlated
4 ZNF394 33 99.0 Weakly correlated
5 ZNF2 20 99.0 Weakly correlated
6 ZNF101 16 43.0 Weakly correlated
7 ZNF610 16 28.9 Weakly correlated
8 ZNF766 16 43.0 Weakly correlated
9 ZNF680 15 28.9 Weakly correlated
10 ZNF324 14 99.0 Weakly correlated
11 ZFP37 13 99.0 Weakly correlated
12 ZFP69B 13 99.0 Weakly correlated
13 ZNF202 11 160.0 Weakly correlated
14 ZNF182 10 99.0 Weakly correlated
15 ZNF18 10 160.0 Weakly correlated
16 ZNF251 10 94.0 Weakly correlated
17 ZNF519 9 19.6 Weakly correlated
18 ZKSCAN1 8 160.0 Weakly correlated
19 ZNF317 8 99.0 Weakly correlated
20 ZNF558 8 99.0 Weakly correlated
21 ZNF705B 8 28.9 Weakly correlated
22 ZIM3 7 87.0 Weakly correlated
23 ZNF263 7 180.0 Weakly correlated
24 ZNF486 7 8.6 Moderately correlated
25 ZNF514 7 94.0 Weakly correlated
26 ZNF723 7 15.2 Highly correlated
27 ZNF792 7 94.0 Weakly correlated
28 ZNF589 6 28.9 Weakly correlated
29 ZNF84 6 99.0 Weakly correlated
30 ZNF471 5 94.0 Weakly correlated
31 ZNF679 5 28.9 Weakly correlated
32 ZNF92 5 28.9 Weakly correlated
33 ZNF197 4 99.0 Weakly correlated
34 ZNF534 4 19.6 Weakly correlated
35 ZNF709 4 87.0 Weakly correlated
36 ZNF763 4 15.2 Highly correlated
37 ZKSCAN8 3 160.0 Weakly correlated
38 ZNF136 3 74.0 Weakly correlated
39 ZNF490 3 43.0 Weakly correlated
40 ZNF506 3 28.9 Weakly correlated
41 ZNF547 3 74.0 Weakly correlated
42 ZNF585B 3 99.0 Weakly correlated
43 ZNF705D 3 28.9 Weakly correlated
44 ZNF77 3 87.0 Weakly correlated
45 ZNF786 3 99.0 Weakly correlated
46 ZNF140 2 99.0 Weakly correlated
47 ZNF141 2 43.0 Weakly correlated
48 ZNF175 2 94.0 Weakly correlated
49 ZNF20 2 43.0 Weakly correlated
50 ZNF230 2 28.9 Weakly correlated
51 ZNF264 2 99.0 Weakly correlated
52 ZNF26 2 99.0 Weakly correlated
53 ZNF28 2 28.9 Weakly correlated
54 ZNF343 2 74.0 Weakly correlated
55 ZNF446 2 94.0 Weakly correlated
56 ZNF479 2 6.4 Moderately correlated
57 ZNF528 2 43.0 Weakly correlated
58 ZNF549 2 87.0 Weakly correlated
59 ZNF554 2 99.0 Weakly correlated
60 ZNF563 2 28.9 Weakly correlated
61 ZNF605 2 99.0 Weakly correlated
62 ZNF641 2 99.0 Weakly correlated
63 ZNF682 2 28.9 Weakly correlated
64 ZNF695 2 28.9 Weakly correlated
65 ZNF75A 2 94.0 Weakly correlated
66 ZNF778 2 74.0 Weakly correlated
67 ZNF793 2 99.0 Weakly correlated
68 ZFP57 1 87.0 Weakly correlated
69 ZFP69 1 99.0 Weakly correlated
70 ZKSCAN2 1 180.0 Weakly correlated
71 ZNF10 1 99.0 Weakly correlated
72 ZNF133 1 99.0 Weakly correlated
73 ZNF160 1 74.0 Weakly correlated
74 ZNF222 1 43.0 Weakly correlated
75 ZNF225 1 74.0 Weakly correlated
76 ZNF253 1 19.6 Weakly correlated
77 ZNF256 1 74.0 Weakly correlated
78 ZNF267 1 43.0 Weakly correlated
79 ZNF273 1 28.9 Weakly correlated
80 ZNF287 1 99.0 Weakly correlated
81 ZNF320 1 28.9 Weakly correlated
82 ZNF334 1 99.0 Weakly correlated
83 ZNF425 1 94.0 Weakly correlated
84 ZNF468 1 28.9 Weakly correlated
85 ZNF485 1 94.0 Weakly correlated
86 ZNF510 1 99.0 Weakly correlated
87 ZNF560 1 43.0 Weakly correlated
88 ZNF597 1 94.0 Weakly correlated
89 ZNF606 1 99.0 Weakly correlated
90 ZNF607 1 43.0 Weakly correlated
91 ZNF649 1 28.9 Weakly correlated
92 ZNF677 1 99.0 Weakly correlated
93 ZNF700 1 28.9 Weakly correlated
94 ZNF701 1 28.9 Weakly correlated
95 ZNF707 1 74.0 Weakly correlated
96 ZNF726 1 28.9 Weakly correlated
97 ZNF761 1 19.6 Weakly correlated
98 ZNF765 1 8.6 Moderately correlated
99 ZNF845 1 28.9 Weakly correlated
100 ZNF85 1 28.9 Weakly correlated
101 ZNF878 1 43.0 Weakly correlated
102 ZNF8 1 99.0 Weakly correlated
103 ZNF93 1 8.6 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 139 43.0 Weakly correlated
2 ZNF461 42 99.0 Weakly correlated
3 ZNF202 8 160.0 Weakly correlated
4 ZNF182 7 99.0 Weakly correlated
5 ZNF101 6 43.0 Weakly correlated
6 ZNF394 6 99.0 Weakly correlated
7 ZNF610 5 28.9 Weakly correlated
8 ZNF519 4 19.6 Weakly correlated
9 ZFP37 3 99.0 Weakly correlated
10 ZNF792 3 94.0 Weakly correlated
11 ZNF534 2 19.6 Weakly correlated
12 ZNF695 2 28.9 Weakly correlated
13 ZNF343 1 74.0 Weakly correlated
14 ZNF786 1 99.0 Weakly correlated
15 ZNF264 1 99.0 Weakly correlated
16 ZNF723 1 15.2 Highly correlated
17 ZNF554 1 99.0 Weakly correlated
18 ZNF84 1 99.0 Weakly correlated
19 ZNF18 1 160.0 Weakly correlated
20 ZNF641 1 99.0 Weakly correlated
21 ZNF425 1 94.0 Weakly correlated
22 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF461 99.0 Weakly correlated