ZRdb KZFP & Repeats
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SINE_ALUYA8

  • Name
    ALUYA8
  • Repbase
    AluYa8
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000054
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaacggtgaaaccccgtctctactaaaactacaaaaaatagccgggcgtagtggcgggcgcctgtagtcctagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcccgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 28 43.0 Weakly correlated
2 ZKSCAN1 9 160.0 Weakly correlated
3 ZNF394 9 99.0 Weakly correlated
4 ZNF284 7 43.0 Weakly correlated
5 ZFP37 5 99.0 Weakly correlated
6 ZKSCAN4 5 99.0 Weakly correlated
7 ZNF160 5 74.0 Weakly correlated
8 ZNF18 5 160.0 Weakly correlated
9 ZNF251 5 94.0 Weakly correlated
10 ZNF347 5 43.0 Weakly correlated
11 ZNF487 5 28.9 Weakly correlated
12 ZNF544 5 0.0 Weakly correlated
13 ZNF101 4 43.0 Weakly correlated
14 ZNF182 4 99.0 Weakly correlated
15 ZNF20 4 43.0 Weakly correlated
16 ZNF215 4 99.0 Weakly correlated
17 ZNF256 4 74.0 Weakly correlated
18 ZNF382 4 99.0 Weakly correlated
19 ZNF558 4 99.0 Weakly correlated
20 ZNF671 4 94.0 Weakly correlated
21 ZNF792 4 94.0 Weakly correlated
22 ZFP69B 3 99.0 Weakly correlated
23 ZNF257 3 0.0 Weakly correlated
24 ZNF264 3 99.0 Weakly correlated
25 ZNF274 3 99.0 Weakly correlated
26 ZNF416 3 43.0 Weakly correlated
27 ZNF483 3 99.0 Weakly correlated
28 ZNF519 3 19.6 Weakly correlated
29 ZNF547 3 74.0 Weakly correlated
30 ZNF57 3 28.9 Weakly correlated
31 ZNF680 3 28.9 Weakly correlated
32 ZNF729 3 8.6 Moderately correlated
33 ZNF814 3 0.0 Weakly correlated
34 ZFP30 2 99.0 Weakly correlated
35 ZIM3 2 87.0 Weakly correlated
36 ZNF189 2 99.0 Weakly correlated
37 ZNF221 2 74.0 Weakly correlated
38 ZNF234 2 99.0 Weakly correlated
39 ZNF253 2 19.6 Weakly correlated
40 ZNF2 2 99.0 Weakly correlated
41 ZNF324 2 99.0 Weakly correlated
42 ZNF354C 2 99.0 Weakly correlated
43 ZNF445 2 99.0 Weakly correlated
44 ZNF500 2 160.0 Weakly correlated
45 ZNF510 2 99.0 Weakly correlated
46 ZNF568 2 99.0 Weakly correlated
47 ZNF578 2 15.2 Highly correlated
48 ZNF583 2 99.0 Weakly correlated
49 ZNF607 2 43.0 Weakly correlated
50 ZNF688 2 160.0 Weakly correlated
51 ZNF695 2 28.9 Weakly correlated
52 ZNF701 2 28.9 Weakly correlated
53 ZNF705B 2 28.9 Weakly correlated
54 ZNF705E 2 0.0 Weakly correlated
55 ZNF707 2 74.0 Weakly correlated
56 ZNF717 2 0.0 Weakly correlated
57 ZNF726 2 28.9 Weakly correlated
58 ZNF727 2 19.6 Weakly correlated
59 ZNF735 2 28.9 Weakly correlated
60 ZNF746 2 99.0 Weakly correlated
61 ZNF766 2 43.0 Weakly correlated
62 ZNF772 2 94.0 Weakly correlated
63 ZNF813 2 28.9 Weakly correlated
64 ZNF845 2 28.9 Weakly correlated
65 ZNF92 2 28.9 Weakly correlated
66 ZFP69 1 99.0 Weakly correlated
67 ZNF133 1 99.0 Weakly correlated
68 ZNF140 1 99.0 Weakly correlated
69 ZNF175 1 94.0 Weakly correlated
70 ZNF202 1 160.0 Weakly correlated
71 ZNF263 1 180.0 Weakly correlated
72 ZNF286A 1 160.0 Weakly correlated
73 ZNF317 1 99.0 Weakly correlated
74 ZNF419 1 28.9 Weakly correlated
75 ZNF443 1 19.6 Weakly correlated
76 ZNF446 1 94.0 Weakly correlated
77 ZNF461 1 99.0 Weakly correlated
78 ZNF473 1 43.0 Weakly correlated
79 ZNF479 1 6.4 Moderately correlated
80 ZNF486 1 8.6 Moderately correlated
81 ZNF514 1 94.0 Weakly correlated
82 ZNF529 1 99.0 Weakly correlated
83 ZNF530 1 28.9 Weakly correlated
84 ZNF554 1 99.0 Weakly correlated
85 ZNF569 1 99.0 Weakly correlated
86 ZNF589 1 28.9 Weakly correlated
87 ZNF597 1 94.0 Weakly correlated
88 ZNF610 1 28.9 Weakly correlated
89 ZNF658 1 99.0 Weakly correlated
90 ZNF66 1 0.0 Weakly correlated
91 ZNF677 1 99.0 Weakly correlated
92 ZNF679 1 28.9 Weakly correlated
93 ZNF689 1 99.0 Weakly correlated
94 ZNF699 1 99.0 Weakly correlated
95 ZNF705D 1 28.9 Weakly correlated
96 ZNF718 1 19.6 Weakly correlated
97 ZNF747 1 43.0 Weakly correlated
98 ZNF75D 1 94.0 Weakly correlated
99 ZNF763 1 15.2 Highly correlated
100 ZNF786 1 99.0 Weakly correlated
101 ZNF808 1 19.6 Weakly correlated
102 ZNF850 1 28.9 Weakly correlated
103 ZNF852 1 94.0 Weakly correlated
104 ZNF85 1 28.9 Weakly correlated
105 ZNF878 1 43.0 Weakly correlated
106 ZNF879 1 99.0 Weakly correlated
107 ZNF8 1 99.0 Weakly correlated
108 ZNF91 1 6.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 28 43.0 Weakly correlated
2 ZNF284 6 43.0 Weakly correlated
3 ZNF347 3 43.0 Weakly correlated
4 ZKSCAN4 3 99.0 Weakly correlated
5 ZNF18 3 160.0 Weakly correlated
6 ZNF519 3 19.6 Weakly correlated
7 ZNF544 2 0.0 Weakly correlated
8 ZNF394 2 99.0 Weakly correlated
9 ZNF57 2 28.9 Weakly correlated
10 ZNF253 2 19.6 Weakly correlated
11 ZNF20 2 43.0 Weakly correlated
12 ZNF583 2 99.0 Weakly correlated
13 ZNF671 2 94.0 Weakly correlated
14 ZNF182 2 99.0 Weakly correlated
15 ZNF814 2 0.0 Weakly correlated
16 ZNF852 1 94.0 Weakly correlated
17 ZNF514 1 94.0 Weakly correlated
18 ZNF568 1 99.0 Weakly correlated
19 ZNF688 1 160.0 Weakly correlated
20 ZNF221 1 74.0 Weakly correlated
21 ZNF101 1 43.0 Weakly correlated
22 ZNF419 1 28.9 Weakly correlated
23 ZNF729 1 8.6 Moderately correlated
24 ZNF727 1 19.6 Weakly correlated
25 ZNF202 1 160.0 Weakly correlated
26 ZNF850 1 28.9 Weakly correlated
27 ZNF772 1 94.0 Weakly correlated
28 ZNF746 1 99.0 Weakly correlated
29 ZNF416 1 43.0 Weakly correlated
30 ZNF695 1 28.9 Weakly correlated
31 ZNF213 1 180.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats