ZRdb KZFP & Repeats
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SINE_ALUYA5

  • Name
    ALUYA5
  • Repbase
    AluYa5
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000053
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcccgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 119 43.0 Weakly correlated
2 ZNF202 79 160.0 Weakly correlated
3 ZNF382 75 99.0 Weakly correlated
4 ZNF394 45 99.0 Weakly correlated
5 ZNF461 41 99.0 Weakly correlated
6 ZNF2 34 99.0 Weakly correlated
7 ZNF680 30 28.9 Weakly correlated
8 ZNF18 29 160.0 Weakly correlated
9 ZFP37 24 99.0 Weakly correlated
10 ZNF766 21 43.0 Weakly correlated
11 ZNF610 20 28.9 Weakly correlated
12 ZNF101 19 43.0 Weakly correlated
13 ZNF324 19 99.0 Weakly correlated
14 ZFP69B 17 99.0 Weakly correlated
15 ZNF558 15 99.0 Weakly correlated
16 ZNF77 14 87.0 Weakly correlated
17 ZNF182 12 99.0 Weakly correlated
18 ZNF284 12 43.0 Weakly correlated
19 ZIM3 11 87.0 Weakly correlated
20 ZNF251 11 94.0 Weakly correlated
21 ZNF547 11 74.0 Weakly correlated
22 ZNF792 11 94.0 Weakly correlated
23 ZNF91 11 6.0 Moderately correlated
24 ZNF446 10 94.0 Weakly correlated
25 ZNF140 9 99.0 Weakly correlated
26 ZNF317 9 99.0 Weakly correlated
27 ZNF445 9 99.0 Weakly correlated
28 ZKSCAN1 8 160.0 Weakly correlated
29 ZNF519 8 19.6 Weakly correlated
30 ZNF679 8 28.9 Weakly correlated
31 ZNF705B 8 28.9 Weakly correlated
32 ZNF707 8 74.0 Weakly correlated
33 ZNF75D 8 94.0 Weakly correlated
34 ZNF28 7 28.9 Weakly correlated
35 ZNF641 7 99.0 Weakly correlated
36 ZNF8 7 99.0 Weakly correlated
37 ZNF257 6 0.0 Weakly correlated
38 ZNF479 6 6.4 Moderately correlated
39 ZNF486 6 8.6 Moderately correlated
40 ZNF534 6 19.6 Weakly correlated
41 ZNF589 6 28.9 Weakly correlated
42 ZNF695 6 28.9 Weakly correlated
43 ZNF723 6 15.2 Highly correlated
44 ZNF793 6 99.0 Weakly correlated
45 ZNF136 5 74.0 Weakly correlated
46 ZNF471 5 94.0 Weakly correlated
47 ZNF560 5 43.0 Weakly correlated
48 ZNF671 5 94.0 Weakly correlated
49 ZNF735 5 28.9 Weakly correlated
50 ZNF84 5 99.0 Weakly correlated
51 ZNF92 5 28.9 Weakly correlated
52 ZFP57 4 87.0 Weakly correlated
53 ZNF189 4 99.0 Weakly correlated
54 ZNF263 4 180.0 Weakly correlated
55 ZNF286A 4 160.0 Weakly correlated
56 ZNF334 4 99.0 Weakly correlated
57 ZNF490 4 43.0 Weakly correlated
58 ZNF506 4 28.9 Weakly correlated
59 ZNF528 4 43.0 Weakly correlated
60 ZNF549 4 87.0 Weakly correlated
61 ZNF585A 4 99.0 Weakly correlated
62 ZNF585B 4 99.0 Weakly correlated
63 ZNF658 4 99.0 Weakly correlated
64 ZNF705D 4 28.9 Weakly correlated
65 ZKSCAN2 3 180.0 Weakly correlated
66 ZNF141 3 43.0 Weakly correlated
67 ZNF197 3 99.0 Weakly correlated
68 ZNF264 3 99.0 Weakly correlated
69 ZNF273 3 28.9 Weakly correlated
70 ZNF44 3 43.0 Weakly correlated
71 ZNF460 3 74.0 Weakly correlated
72 ZNF468 3 28.9 Weakly correlated
73 ZNF554 3 99.0 Weakly correlated
74 ZNF584 3 99.0 Weakly correlated
75 ZNF649 3 28.9 Weakly correlated
76 ZNF675 3 8.6 Moderately correlated
77 ZNF682 3 28.9 Weakly correlated
78 ZNF701 3 28.9 Weakly correlated
79 ZNF709 3 87.0 Weakly correlated
80 ZNF763 3 15.2 Highly correlated
81 ZNF93 3 8.6 Moderately correlated
82 ZKSCAN5 2 160.0 Weakly correlated
83 ZNF100 2 28.9 Weakly correlated
84 ZNF160 2 74.0 Weakly correlated
85 ZNF175 2 94.0 Weakly correlated
86 ZNF211 2 94.0 Weakly correlated
87 ZNF230 2 28.9 Weakly correlated
88 ZNF30 2 94.0 Weakly correlated
89 ZNF320 2 28.9 Weakly correlated
90 ZNF343 2 74.0 Weakly correlated
91 ZNF347 2 43.0 Weakly correlated
92 ZNF354C 2 99.0 Weakly correlated
93 ZNF419 2 28.9 Weakly correlated
94 ZNF420 2 94.0 Weakly correlated
95 ZNF425 2 94.0 Weakly correlated
96 ZNF432 2 99.0 Weakly correlated
97 ZNF436 2 180.0 Weakly correlated
98 ZNF485 2 94.0 Weakly correlated
99 ZNF514 2 94.0 Weakly correlated
100 ZNF555 2 94.0 Weakly correlated
101 ZNF567 2 99.0 Weakly correlated
102 ZNF614 2 99.0 Weakly correlated
103 ZNF674 2 99.0 Weakly correlated
104 ZNF684 2 99.0 Weakly correlated
105 ZNF700 2 28.9 Weakly correlated
106 ZNF730 2 19.6 Weakly correlated
107 ZNF7 2 99.0 Weakly correlated
108 ZNF846 2 74.0 Weakly correlated
109 ZFP14 1 99.0 Weakly correlated
110 ZFP69 1 99.0 Weakly correlated
111 ZFP90 1 99.0 Weakly correlated
112 ZIM2 1 0.0 Weakly correlated
113 ZKSCAN8 1 160.0 Weakly correlated
114 ZNF124 1 43.0 Weakly correlated
115 ZNF12 1 99.0 Weakly correlated
116 ZNF133 1 99.0 Weakly correlated
117 ZNF154 1 94.0 Weakly correlated
118 ZNF157 1 99.0 Weakly correlated
119 ZNF180 1 99.0 Weakly correlated
120 ZNF222 1 43.0 Weakly correlated
121 ZNF248 1 99.0 Weakly correlated
122 ZNF254 1 43.0 Weakly correlated
123 ZNF256 1 74.0 Weakly correlated
124 ZNF268 1 94.0 Weakly correlated
125 ZNF26 1 99.0 Weakly correlated
126 ZNF287 1 99.0 Weakly correlated
127 ZNF302 1 43.0 Weakly correlated
128 ZNF311 1 99.0 Weakly correlated
129 ZNF333 1 99.0 Weakly correlated
130 ZNF337 1 43.0 Weakly correlated
131 ZNF33A 1 99.0 Weakly correlated
132 ZNF354A 1 99.0 Weakly correlated
133 ZNF418 1 43.0 Weakly correlated
134 ZNF41 1 99.0 Weakly correlated
135 ZNF429 1 28.9 Weakly correlated
136 ZNF433 1 43.0 Weakly correlated
137 ZNF440 1 28.9 Weakly correlated
138 ZNF480 1 43.0 Weakly correlated
139 ZNF484 1 99.0 Weakly correlated
140 ZNF496 1 99.0 Weakly correlated
141 ZNF525 1 19.6 Weakly correlated
142 ZNF530 1 28.9 Weakly correlated
143 ZNF543 1 99.0 Weakly correlated
144 ZNF548 1 94.0 Weakly correlated
145 ZNF557 1 15.2 Highly correlated
146 ZNF559 1 74.0 Weakly correlated
147 ZNF561 1 43.0 Weakly correlated
148 ZNF565 1 99.0 Weakly correlated
149 ZNF568 1 99.0 Weakly correlated
150 ZNF570 1 99.0 Weakly correlated
151 ZNF573 1 94.0 Weakly correlated
152 ZNF587B 1 8.6 Moderately correlated
153 ZNF605 1 99.0 Weakly correlated
154 ZNF607 1 43.0 Weakly correlated
155 ZNF611 1 19.6 Weakly correlated
156 ZNF616 1 43.0 Weakly correlated
157 ZNF627 1 74.0 Weakly correlated
158 ZNF630 1 94.0 Weakly correlated
159 ZNF716 1 19.6 Weakly correlated
160 ZNF747 1 43.0 Weakly correlated
161 ZNF761 1 19.6 Weakly correlated
162 ZNF765 1 8.6 Moderately correlated
163 ZNF778 1 74.0 Weakly correlated
164 ZNF780A 1 43.0 Weakly correlated
165 ZNF799 1 43.0 Weakly correlated
166 ZNF816 1 28.9 Weakly correlated
167 ZNF823 1 43.0 Weakly correlated
168 ZNF85 1 28.9 Weakly correlated
169 ZNF878 1 43.0 Weakly correlated
170 ZNF879 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 94 43.0 Weakly correlated
2 ZNF202 56 160.0 Weakly correlated
3 ZNF461 41 99.0 Weakly correlated
4 ZNF610 10 28.9 Weakly correlated
5 ZNF101 9 43.0 Weakly correlated
6 ZNF394 9 99.0 Weakly correlated
7 ZNF18 9 160.0 Weakly correlated
8 ZNF182 9 99.0 Weakly correlated
9 ZNF284 8 43.0 Weakly correlated
10 ZNF445 8 99.0 Weakly correlated
11 ZFP37 7 99.0 Weakly correlated
12 ZNF792 6 94.0 Weakly correlated
13 ZNF91 4 6.0 Moderately correlated
14 ZNF519 4 19.6 Weakly correlated
15 ZNF334 4 99.0 Weakly correlated
16 ZNF695 4 28.9 Weakly correlated
17 ZNF140 3 99.0 Weakly correlated
18 ZNF264 2 99.0 Weakly correlated
19 ZNF460 2 74.0 Weakly correlated
20 ZNF468 1 28.9 Weakly correlated
21 ZNF2 1 99.0 Weakly correlated
22 ZNF705D 1 28.9 Weakly correlated
23 ZNF554 1 99.0 Weakly correlated
24 ZNF630 1 94.0 Weakly correlated
25 ZNF560 1 43.0 Weakly correlated
26 ZNF257 1 0.0 Weakly correlated
27 ZNF616 1 43.0 Weakly correlated
28 ZNF287 1 99.0 Weakly correlated
29 ZNF723 1 15.2 Highly correlated
30 ZNF320 1 28.9 Weakly correlated
31 ZNF273 1 28.9 Weakly correlated
32 ZNF684 1 99.0 Weakly correlated
33 ZNF534 1 19.6 Weakly correlated
34 ZNF707 1 74.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF445 99.0 Weakly correlated
5 ZNF461 99.0 Weakly correlated
6 ZNF792 94.0 Weakly correlated