ZRdb KZFP & Repeats
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SINE_ALUSZ6

  • Name
    ALUSZ6
  • Repbase
    AluSz6
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000052
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacttgaggccaggagttcgagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggaggctgaggcacgagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1423 99.0 Weakly correlated
2 ZNF394 1113 99.0 Weakly correlated
3 ZNF284 505 43.0 Weakly correlated
4 ZNF2 485 99.0 Weakly correlated
5 ZNF18 369 160.0 Weakly correlated
6 ZFP37 368 99.0 Weakly correlated
7 ZNF766 351 43.0 Weakly correlated
8 ZNF101 323 43.0 Weakly correlated
9 ZNF705B 304 28.9 Weakly correlated
10 ZNF257 294 0.0 Weakly correlated
11 ZNF519 276 19.6 Weakly correlated
12 ZNF680 270 28.9 Weakly correlated
13 ZFP69B 255 99.0 Weakly correlated
14 ZNF324 244 99.0 Weakly correlated
15 ZNF558 230 99.0 Weakly correlated
16 ZNF263 200 180.0 Weakly correlated
17 ZIM3 181 87.0 Weakly correlated
18 ZNF140 177 99.0 Weakly correlated
19 ZKSCAN1 175 160.0 Weakly correlated
20 ZNF506 172 28.9 Weakly correlated
21 ZNF705D 168 28.9 Weakly correlated
22 ZNF182 165 99.0 Weakly correlated
23 ZNF479 164 6.4 Weakly correlated
24 ZNF317 153 99.0 Weakly correlated
25 ZNF534 150 19.6 Weakly correlated
26 ZNF589 148 28.9 Weakly correlated
27 ZNF610 144 28.9 Weakly correlated
28 ZNF175 136 94.0 Weakly correlated
29 ZNF554 120 99.0 Weakly correlated
30 ZNF441 119 43.0 Weakly correlated
31 ZNF251 112 94.0 Weakly correlated
32 ZNF429 112 28.9 Weakly correlated
33 ZNF679 112 28.9 Weakly correlated
34 ZNF792 104 94.0 Weakly correlated
35 ZKSCAN8 100 160.0 Weakly correlated
36 ZNF92 78 28.9 Weakly correlated
37 ZNF723 75 15.2 Weakly correlated
38 ZNF793 72 99.0 Weakly correlated
39 ZNF585B 70 99.0 Weakly correlated
40 ZNF202 69 160.0 Weakly correlated
41 ZNF547 67 74.0 Highly correlated
42 ZNF197 65 99.0 Weakly correlated
43 ZFP57 62 87.0 Weakly correlated
44 ZNF274 59 99.0 Weakly correlated
45 ZNF584 59 99.0 Weakly correlated
46 ZNF264 51 99.0 Weakly correlated
47 ZNF597 51 94.0 Weakly correlated
48 ZNF8 49 99.0 Weakly correlated
49 ZNF28 45 28.9 Weakly correlated
50 ZNF585A 44 99.0 Weakly correlated
51 ZNF287 41 99.0 Weakly correlated
52 ZNF75D 41 94.0 Weakly correlated
53 ZNF486 40 8.6 Weakly correlated
54 ZNF701 40 28.9 Weakly correlated
55 ZNF133 38 99.0 Weakly correlated
56 ZNF786 36 99.0 Weakly correlated
57 ZNF460 35 74.0 Highly correlated
58 ZNF490 34 43.0 Weakly correlated
59 ZNF528 33 43.0 Weakly correlated
60 ZNF707 32 74.0 Highly correlated
61 ZNF160 31 74.0 Highly correlated
62 ZNF320 30 28.9 Weakly correlated
63 ZNF695 30 28.9 Weakly correlated
64 ZNF485 29 94.0 Weakly correlated
65 ZNF641 28 99.0 Weakly correlated
66 ZNF136 27 74.0 Highly correlated
67 ZNF84 27 99.0 Weakly correlated
68 ZKSCAN5 26 160.0 Weakly correlated
69 ZNF273 24 28.9 Weakly correlated
70 ZNF141 23 43.0 Weakly correlated
71 ZNF334 23 99.0 Weakly correlated
72 ZNF331 22 94.0 Weakly correlated
73 ZNF823 20 43.0 Weakly correlated
74 ZNF425 18 94.0 Weakly correlated
75 ZNF671 18 94.0 Weakly correlated
76 ZNF778 18 74.0 Highly correlated
77 ZNF135 17 94.0 Weakly correlated
78 ZFP28 16 99.0 Weakly correlated
79 ZNF222 16 43.0 Weakly correlated
80 ZNF471 16 94.0 Weakly correlated
81 ZNF674 16 99.0 Weakly correlated
82 ZNF735 16 28.9 Weakly correlated
83 ZNF436 15 180.0 Weakly correlated
84 ZNF549 15 87.0 Weakly correlated
85 ZNF675 15 8.6 Weakly correlated
86 ZNF879 15 99.0 Weakly correlated
87 ZFP69 14 99.0 Weakly correlated
88 ZNF468 14 28.9 Weakly correlated
89 ZNF230 13 28.9 Weakly correlated
90 ZNF248 13 99.0 Weakly correlated
91 ZNF354A 12 99.0 Weakly correlated
92 ZNF730 11 19.6 Weakly correlated
93 ZNF169 10 94.0 Weakly correlated
94 ZNF26 10 99.0 Weakly correlated
95 ZNF567 10 99.0 Weakly correlated
96 ZNF611 10 19.6 Weakly correlated
97 ZNF716 10 19.6 Weakly correlated
98 ZNF91 10 6.0 Weakly correlated
99 ZNF189 9 99.0 Weakly correlated
100 ZNF100 8 28.9 Weakly correlated
101 ZNF211 8 94.0 Weakly correlated
102 ZNF224 8 69.0 Moderately correlated
103 ZNF304 8 99.0 Weakly correlated
104 ZNF440 8 28.9 Weakly correlated
105 ZNF445 8 99.0 Weakly correlated
106 ZNF530 8 28.9 Weakly correlated
107 ZNF605 8 99.0 Weakly correlated
108 ZNF85 8 28.9 Weakly correlated
109 ZNF878 8 43.0 Weakly correlated
110 ZNF124 7 43.0 Weakly correlated
111 ZNF560 7 43.0 Weakly correlated
112 ZNF682 7 28.9 Weakly correlated
113 ZNF10 6 99.0 Weakly correlated
114 ZNF17 6 69.0 Moderately correlated
115 ZNF343 6 74.0 Highly correlated
116 ZNF383 6 99.0 Weakly correlated
117 ZNF44 6 43.0 Weakly correlated
118 ZNF510 6 99.0 Weakly correlated
119 ZNF616 6 43.0 Weakly correlated
120 ZNF700 6 28.9 Weakly correlated
121 ZNF780A 6 43.0 Weakly correlated
122 ZNF93 6 8.6 Weakly correlated
123 ZKSCAN2 5 180.0 Weakly correlated
124 ZNF282 5 319.0 Weakly correlated
125 ZNF283 5 99.0 Weakly correlated
126 ZNF30 5 94.0 Weakly correlated
127 ZNF33A 5 99.0 Weakly correlated
128 ZNF354C 5 99.0 Weakly correlated
129 ZNF420 5 94.0 Weakly correlated
130 ZNF43 5 43.0 Weakly correlated
131 ZNF563 5 28.9 Weakly correlated
132 ZNF565 5 99.0 Weakly correlated
133 ZNF583 5 99.0 Weakly correlated
134 ZNF627 5 74.0 Highly correlated
135 ZNF736 5 43.0 Weakly correlated
136 ZIK1 4 87.0 Weakly correlated
137 ZNF253 4 19.6 Weakly correlated
138 ZNF586 4 43.0 Weakly correlated
139 ZNF658 4 99.0 Weakly correlated
140 ZNF677 4 99.0 Weakly correlated
141 ZNF75A 4 94.0 Weakly correlated
142 ZNF765 4 8.6 Weakly correlated
143 ZNF777 4 319.0 Weakly correlated
144 ZNF789 4 99.0 Weakly correlated
145 ZNF81 4 99.0 Weakly correlated
146 ZFP14 3 99.0 Weakly correlated
147 ZFP30 3 99.0 Weakly correlated
148 ZNF180 3 99.0 Weakly correlated
149 ZNF225 3 74.0 Highly correlated
150 ZNF234 3 99.0 Weakly correlated
151 ZNF267 3 43.0 Weakly correlated
152 ZNF286A 3 160.0 Weakly correlated
153 ZNF41 3 99.0 Weakly correlated
154 ZNF433 3 43.0 Weakly correlated
155 ZNF454 3 99.0 Weakly correlated
156 ZNF480 3 43.0 Weakly correlated
157 ZNF483 3 99.0 Weakly correlated
158 ZNF559 3 74.0 Highly correlated
159 ZNF573 3 94.0 Weakly correlated
160 ZNF613 3 99.0 Weakly correlated
161 ZNF791 3 87.0 Weakly correlated
162 ZNF808 3 19.6 Weakly correlated
163 ZNF816 3 28.9 Weakly correlated
164 ZNF845 3 28.9 Weakly correlated
165 RBAK 2 99.0 Weakly correlated
166 ZFP90 2 99.0 Weakly correlated
167 ZNF157 2 99.0 Weakly correlated
168 ZNF177 2 94.0 Weakly correlated
169 ZNF250 2 99.0 Weakly correlated
170 ZNF347 2 43.0 Weakly correlated
171 ZNF418 2 43.0 Weakly correlated
172 ZNF419 2 28.9 Weakly correlated
173 ZNF544 2 0.0 Weakly correlated
174 ZNF548 2 94.0 Weakly correlated
175 ZNF568 2 99.0 Weakly correlated
176 ZNF614 2 99.0 Weakly correlated
177 ZNF624 2 99.0 Weakly correlated
178 ZNF626 2 0.0 Weakly correlated
179 ZNF689 2 99.0 Weakly correlated
180 ZNF727 2 19.6 Weakly correlated
181 ZNF74 2 99.0 Weakly correlated
182 ZNF761 2 19.6 Weakly correlated
183 ZNF776 2 43.0 Weakly correlated
184 ZNF813 2 28.9 Weakly correlated
185 ZIM2 1 0.0 Weakly correlated
186 ZKSCAN3 1 99.0 Weakly correlated
187 ZNF114 1 28.9 Weakly correlated
188 ZNF12 1 99.0 Weakly correlated
189 ZNF14 1 69.0 Moderately correlated
190 ZNF154 1 94.0 Weakly correlated
191 ZNF184 1 99.0 Weakly correlated
192 ZNF227 1 99.0 Weakly correlated
193 ZNF254 1 43.0 Weakly correlated
194 ZNF302 1 43.0 Weakly correlated
195 ZNF333 1 99.0 Weakly correlated
196 ZNF337 1 43.0 Weakly correlated
197 ZNF417 1 28.9 Weakly correlated
198 ZNF431 1 28.9 Weakly correlated
199 ZNF432 1 99.0 Weakly correlated
200 ZNF439 1 8.6 Weakly correlated
201 ZNF442 1 43.0 Weakly correlated
202 ZNF470 1 99.0 Weakly correlated
203 ZNF500 1 160.0 Weakly correlated
204 ZNF527 1 99.0 Weakly correlated
205 ZNF540 1 87.0 Weakly correlated
206 ZNF543 1 99.0 Weakly correlated
207 ZNF550 1 94.0 Weakly correlated
208 ZNF551 1 94.0 Weakly correlated
209 ZNF552 1 28.9 Weakly correlated
210 ZNF557 1 15.2 Weakly correlated
211 ZNF561 1 43.0 Weakly correlated
212 ZNF562 1 28.9 Weakly correlated
213 ZNF570 1 99.0 Weakly correlated
214 ZNF571 1 99.0 Weakly correlated
215 ZNF582 1 99.0 Weakly correlated
216 ZNF587 1 28.9 Weakly correlated
217 ZNF595 1 43.0 Weakly correlated
218 ZNF607 1 43.0 Weakly correlated
219 ZNF649 1 28.9 Weakly correlated
220 ZNF667 1 99.0 Weakly correlated
221 ZNF66 1 0.0 Weakly correlated
222 ZNF684 1 99.0 Weakly correlated
223 ZNF699 1 99.0 Weakly correlated
224 ZNF705E 1 0.0 Weakly correlated
225 ZNF749 1 28.9 Weakly correlated
226 ZNF763 1 15.2 Weakly correlated
227 ZNF782 1 99.0 Weakly correlated
228 ZNF799 1 43.0 Weakly correlated
229 ZNF7 1 99.0 Weakly correlated
230 ZNF836 1 43.0 Weakly correlated
231 ZNF850 1 28.9 Weakly correlated
232 ZNF852 1 94.0 Weakly correlated
233 ZNF860 1 0.0 Weakly correlated
234 ZNF880 1 28.9 Weakly correlated
235 ZNF891 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 454 43.0 Weakly correlated
2 ZNF519 248 19.6 Weakly correlated
3 ZNF101 216 43.0 Weakly correlated
4 ZNF257 212 0.0 Weakly correlated
5 ZNF394 146 99.0 Weakly correlated
6 ZNF506 144 28.9 Weakly correlated
7 ZNF182 135 99.0 Weakly correlated
8 ZNF140 122 99.0 Weakly correlated
9 ZNF18 106 160.0 Weakly correlated
10 ZNF382 102 99.0 Weakly correlated
11 ZNF429 93 28.9 Weakly correlated
12 ZNF479 84 6.4 Weakly correlated
13 ZFP37 81 99.0 Weakly correlated
14 ZNF441 78 43.0 Weakly correlated
15 ZNF534 64 19.6 Weakly correlated
16 ZNF610 64 28.9 Weakly correlated
17 ZNF792 60 94.0 Weakly correlated
18 ZNF202 46 160.0 Weakly correlated
19 ZNF460 34 74.0 Highly correlated
20 ZNF264 33 99.0 Weakly correlated
21 ZNF705B 28 28.9 Weakly correlated
22 ZNF287 27 99.0 Weakly correlated
23 ZNF554 25 99.0 Weakly correlated
24 ZIM3 23 87.0 Weakly correlated
25 ZNF786 23 99.0 Weakly correlated
26 ZNF705D 22 28.9 Weakly correlated
27 ZNF695 20 28.9 Weakly correlated
28 ZNF263 20 180.0 Weakly correlated
29 ZNF334 18 99.0 Weakly correlated
30 ZNF641 17 99.0 Weakly correlated
31 ZNF585A 15 99.0 Weakly correlated
32 ZNF135 14 94.0 Weakly correlated
33 ZNF793 13 99.0 Weakly correlated
34 ZNF324 13 99.0 Weakly correlated
35 ZFP57 10 87.0 Weakly correlated
36 ZNF680 10 28.9 Weakly correlated
37 ZKSCAN5 9 160.0 Weakly correlated
38 ZNF273 9 28.9 Weakly correlated
39 ZNF766 9 43.0 Weakly correlated
40 ZNF674 8 99.0 Weakly correlated
41 ZNF468 7 28.9 Weakly correlated
42 ZNF485 7 94.0 Weakly correlated
43 ZNF558 7 99.0 Weakly correlated
44 ZNF141 6 43.0 Weakly correlated
45 ZNF823 6 43.0 Weakly correlated
46 ZNF679 5 28.9 Weakly correlated
47 ZNF136 4 74.0 Highly correlated
48 ZNF197 4 99.0 Weakly correlated
49 ZNF75D 4 94.0 Weakly correlated
50 ZNF383 4 99.0 Weakly correlated
51 ZNF585B 4 99.0 Weakly correlated
52 ZNF707 4 74.0 Highly correlated
53 ZNF222 4 43.0 Weakly correlated
54 ZNF701 4 28.9 Weakly correlated
55 ZNF425 4 94.0 Weakly correlated
56 ZNF2 4 99.0 Weakly correlated
57 ZNF445 4 99.0 Weakly correlated
58 ZIK1 3 87.0 Weakly correlated
59 ZNF169 3 94.0 Weakly correlated
60 ZNF584 3 99.0 Weakly correlated
61 ZNF675 3 8.6 Weakly correlated
62 ZNF735 3 28.9 Weakly correlated
63 ZNF92 3 28.9 Weakly correlated
64 ZNF530 3 28.9 Weakly correlated
65 ZNF597 3 94.0 Weakly correlated
66 ZNF716 3 19.6 Weakly correlated
67 ZNF225 3 74.0 Highly correlated
68 ZNF283 3 99.0 Weakly correlated
69 ZFP14 2 99.0 Weakly correlated
70 ZNF100 2 28.9 Weakly correlated
71 ZNF160 2 74.0 Highly correlated
72 ZNF224 2 69.0 Moderately correlated
73 ZNF589 2 28.9 Weakly correlated
74 ZNF251 2 94.0 Weakly correlated
75 ZNF616 2 43.0 Weakly correlated
76 ZNF28 2 28.9 Weakly correlated
77 ZNF320 2 28.9 Weakly correlated
78 ZNF605 2 99.0 Weakly correlated
79 ZNF560 2 43.0 Weakly correlated
80 ZNF547 2 74.0 Highly correlated
81 ZNF343 2 74.0 Highly correlated
82 ZNF8 2 99.0 Weakly correlated
83 ZFP69B 1 99.0 Weakly correlated
84 ZKSCAN1 1 160.0 Weakly correlated
85 ZNF486 1 8.6 Weakly correlated
86 ZNF552 1 28.9 Weakly correlated
87 ZNF736 1 43.0 Weakly correlated
88 ZNF189 1 99.0 Weakly correlated
89 ZNF879 1 99.0 Weakly correlated
90 ZNF274 1 99.0 Weakly correlated
91 ZNF417 1 28.9 Weakly correlated
92 ZNF471 1 94.0 Weakly correlated
93 ZNF528 1 43.0 Weakly correlated
94 ZNF677 1 99.0 Weakly correlated
95 ZNF780A 1 43.0 Weakly correlated
96 ZNF813 1 28.9 Weakly correlated
97 ZNF440 1 28.9 Weakly correlated
98 ZNF671 1 94.0 Weakly correlated
99 ZNF184 1 99.0 Weakly correlated
100 ZNF33A 1 99.0 Weakly correlated
101 ZNF419 1 28.9 Weakly correlated
102 ZNF44 1 43.0 Weakly correlated
103 ZNF571 1 99.0 Weakly correlated
104 ZNF880 1 28.9 Weakly correlated
105 ZNF682 1 28.9 Weakly correlated
106 ZNF878 1 43.0 Weakly correlated
107 ZFP28 1 99.0 Weakly correlated
108 ZNF175 1 94.0 Weakly correlated
109 ZNF317 1 99.0 Weakly correlated
110 ZNF331 1 94.0 Weakly correlated
111 ZNF347 1 43.0 Weakly correlated
112 ZNF567 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZKSCAN5 160.0 Weakly correlated
3 ZNF182 99.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF287 99.0 Weakly correlated
6 ZNF382 99.0 Weakly correlated
7 ZNF429 28.9 Weakly correlated
8 ZNF506 28.9 Weakly correlated
9 ZNF554 99.0 Weakly correlated
10 ZNF680 28.9 Weakly correlated
11 ZNF695 28.9 Weakly correlated
12 ZNF792 94.0 Weakly correlated