ZRdb KZFP & Repeats
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SINE_ALUSZ

  • Name
    ALUSZ
  • Repbase
    AluSz
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000051
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker. This element is described in"Origin and evolution of Alu repetitive elements"; Jurka J.; MolecularBiology Intelligence Unit:The impact of short interspersed elements(SINEs) on the host genome (ed. Richard J. Maraia), R.G. Landes Company,Austin, pp.25-41 (1995)
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 2939 99.0 Weakly correlated
2 ZNF394 2599 99.0 Weakly correlated
3 ZNF2 1362 99.0 Weakly correlated
4 ZNF284 1123 43.0 Weakly correlated
5 ZFP37 971 99.0 Weakly correlated
6 ZNF18 955 160.0 Weakly correlated
7 ZNF766 782 43.0 Weakly correlated
8 ZNF101 778 43.0 Weakly correlated
9 ZNF441 763 43.0 Weakly correlated
10 ZFP69B 677 99.0 Weakly correlated
11 ZNF680 675 28.9 Weakly correlated
12 ZNF519 616 19.6 Weakly correlated
13 ZNF324 612 99.0 Weakly correlated
14 ZNF558 594 99.0 Weakly correlated
15 ZNF705B 588 28.9 Weakly correlated
16 ZNF257 567 0.0 Weakly correlated
17 ZKSCAN1 485 160.0 Weakly correlated
18 ZNF263 460 180.0 Weakly correlated
19 ZNF610 444 28.9 Weakly correlated
20 ZNF479 442 6.4 Weakly correlated
21 ZNF182 409 99.0 Weakly correlated
22 ZNF506 405 28.9 Weakly correlated
23 ZNF140 378 99.0 Weakly correlated
24 ZIM3 360 87.0 Weakly correlated
25 ZNF589 328 28.9 Weakly correlated
26 ZNF317 327 99.0 Weakly correlated
27 ZNF705D 311 28.9 Weakly correlated
28 ZNF534 302 19.6 Weakly correlated
29 ZNF175 290 94.0 Weakly correlated
30 ZNF792 288 94.0 Weakly correlated
31 ZNF251 269 94.0 Weakly correlated
32 ZNF429 243 28.9 Weakly correlated
33 ZNF679 204 28.9 Weakly correlated
34 ZKSCAN8 202 160.0 Weakly correlated
35 ZNF554 201 99.0 Weakly correlated
36 ZNF723 192 15.2 Weakly correlated
37 ZNF547 174 74.0 Highly correlated
38 ZNF92 173 28.9 Weakly correlated
39 ZNF584 170 99.0 Weakly correlated
40 ZFP57 167 87.0 Weakly correlated
41 ZNF202 160 160.0 Weakly correlated
42 ZNF197 153 99.0 Weakly correlated
43 ZNF641 147 99.0 Weakly correlated
44 ZNF585B 146 99.0 Weakly correlated
45 ZNF8 143 99.0 Weakly correlated
46 ZNF460 138 74.0 Highly correlated
47 ZNF793 126 99.0 Weakly correlated
48 ZNF264 119 99.0 Weakly correlated
49 ZNF707 118 74.0 Highly correlated
50 ZNF28 117 28.9 Weakly correlated
51 ZNF695 115 28.9 Weakly correlated
52 ZNF597 109 94.0 Weakly correlated
53 ZNF75D 103 94.0 Weakly correlated
54 ZNF701 96 28.9 Weakly correlated
55 ZNF486 95 8.6 Weakly correlated
56 ZNF485 82 94.0 Weakly correlated
57 ZNF274 81 99.0 Weakly correlated
58 ZNF490 77 43.0 Weakly correlated
59 ZNF585A 77 99.0 Weakly correlated
60 ZNF334 74 99.0 Weakly correlated
61 ZNF528 70 43.0 Weakly correlated
62 ZNF287 69 99.0 Weakly correlated
63 ZNF786 61 99.0 Weakly correlated
64 ZNF84 59 99.0 Weakly correlated
65 ZNF133 57 99.0 Weakly correlated
66 ZNF136 53 74.0 Highly correlated
67 ZNF160 53 74.0 Highly correlated
68 ZFP28 50 99.0 Weakly correlated
69 ZNF141 47 43.0 Weakly correlated
70 ZKSCAN5 46 160.0 Weakly correlated
71 ZNF135 41 94.0 Weakly correlated
72 ZNF320 41 28.9 Weakly correlated
73 ZNF778 39 74.0 Highly correlated
74 ZNF273 38 28.9 Weakly correlated
75 ZNF471 37 94.0 Weakly correlated
76 ZNF682 37 28.9 Weakly correlated
77 ZNF468 36 28.9 Weakly correlated
78 ZNF248 34 99.0 Weakly correlated
79 ZNF189 33 99.0 Weakly correlated
80 ZNF445 32 99.0 Weakly correlated
81 ZNF671 30 94.0 Weakly correlated
82 ZNF735 30 28.9 Weakly correlated
83 ZNF425 29 94.0 Weakly correlated
84 ZNF282 28 319.0 Weakly correlated
85 ZNF879 28 99.0 Weakly correlated
86 ZNF169 26 94.0 Weakly correlated
87 ZNF331 25 94.0 Weakly correlated
88 ZNF436 25 180.0 Weakly correlated
89 ZNF675 25 8.6 Weakly correlated
90 ZNF823 25 43.0 Weakly correlated
91 ZNF549 23 87.0 Weakly correlated
92 ZNF616 23 43.0 Weakly correlated
93 ZNF347 22 43.0 Weakly correlated
94 ZNF354C 19 99.0 Weakly correlated
95 ZNF674 19 99.0 Weakly correlated
96 ZNF33A 18 99.0 Weakly correlated
97 ZNF573 18 94.0 Weakly correlated
98 ZNF91 18 6.0 Weakly correlated
99 ZNF583 17 99.0 Weakly correlated
100 ZFP69 16 99.0 Weakly correlated
101 ZNF100 16 28.9 Weakly correlated
102 ZNF211 16 94.0 Weakly correlated
103 ZNF26 16 99.0 Weakly correlated
104 ZNF730 16 19.6 Weakly correlated
105 ZNF85 16 28.9 Weakly correlated
106 ZNF222 15 43.0 Weakly correlated
107 ZNF230 15 28.9 Weakly correlated
108 ZNF304 15 99.0 Weakly correlated
109 ZNF354A 15 99.0 Weakly correlated
110 ZNF41 15 99.0 Weakly correlated
111 ZNF75A 15 94.0 Weakly correlated
112 ZNF789 15 99.0 Weakly correlated
113 ZNF878 15 43.0 Weakly correlated
114 ZFP30 14 99.0 Weakly correlated
115 ZNF480 14 43.0 Weakly correlated
116 ZNF563 14 28.9 Weakly correlated
117 ZNF677 14 99.0 Weakly correlated
118 ZNF816 14 28.9 Weakly correlated
119 ZNF30 12 94.0 Weakly correlated
120 ZNF343 12 74.0 Highly correlated
121 ZNF44 12 43.0 Weakly correlated
122 ZNF567 12 99.0 Weakly correlated
123 ZNF337 11 43.0 Weakly correlated
124 ZNF350 11 99.0 Weakly correlated
125 ZNF605 11 99.0 Weakly correlated
126 ZNF93 11 8.6 Weakly correlated
127 ZNF10 10 99.0 Weakly correlated
128 ZNF12 10 99.0 Weakly correlated
129 ZNF224 10 69.0 Moderately correlated
130 ZNF627 10 74.0 Highly correlated
131 ZKSCAN2 9 180.0 Weakly correlated
132 ZNF17 9 69.0 Moderately correlated
133 ZNF440 9 28.9 Weakly correlated
134 ZNF510 9 99.0 Weakly correlated
135 ZNF560 9 43.0 Weakly correlated
136 ZNF124 8 43.0 Weakly correlated
137 ZNF420 8 94.0 Weakly correlated
138 ZNF530 8 28.9 Weakly correlated
139 ZNF555 8 94.0 Weakly correlated
140 ZNF611 8 19.6 Weakly correlated
141 ZNF613 8 99.0 Weakly correlated
142 ZNF765 8 8.6 Weakly correlated
143 ZNF845 8 28.9 Weakly correlated
144 ZNF286A 7 160.0 Weakly correlated
145 ZNF433 7 43.0 Weakly correlated
146 ZNF559 7 74.0 Highly correlated
147 ZNF700 7 28.9 Weakly correlated
148 ZNF716 7 19.6 Weakly correlated
149 ZNF780A 7 43.0 Weakly correlated
150 ZFP14 6 99.0 Weakly correlated
151 ZNF283 6 99.0 Weakly correlated
152 ZNF461 6 99.0 Weakly correlated
153 ZNF483 6 99.0 Weakly correlated
154 ZNF763 6 15.2 Weakly correlated
155 ZNF81 6 99.0 Weakly correlated
156 ZNF157 5 99.0 Weakly correlated
157 ZNF250 5 99.0 Weakly correlated
158 ZNF418 5 43.0 Weakly correlated
159 ZNF557 5 15.2 Weakly correlated
160 ZNF586 5 43.0 Weakly correlated
161 ZNF607 5 43.0 Weakly correlated
162 ZNF649 5 28.9 Weakly correlated
163 ZNF77 5 87.0 Weakly correlated
164 ZFP90 4 99.0 Weakly correlated
165 ZNF267 4 43.0 Weakly correlated
166 ZNF383 4 99.0 Weakly correlated
167 ZNF417 4 28.9 Weakly correlated
168 ZNF43 4 43.0 Weakly correlated
169 ZNF454 4 99.0 Weakly correlated
170 ZNF484 4 99.0 Weakly correlated
171 ZNF561 4 43.0 Weakly correlated
172 ZNF564 4 74.0 Highly correlated
173 ZNF565 4 99.0 Weakly correlated
174 ZNF684 4 99.0 Weakly correlated
175 ZNF705E 4 0.0 Weakly correlated
176 ZNF74 4 99.0 Weakly correlated
177 ZNF808 4 19.6 Weakly correlated
178 RBAK 3 99.0 Weakly correlated
179 ZFP82 3 99.0 Weakly correlated
180 ZIK1 3 87.0 Weakly correlated
181 ZNF132 3 94.0 Weakly correlated
182 ZNF154 3 94.0 Weakly correlated
183 ZNF254 3 43.0 Weakly correlated
184 ZNF333 3 99.0 Weakly correlated
185 ZNF45 3 99.0 Weakly correlated
186 ZNF543 3 99.0 Weakly correlated
187 ZNF582 3 99.0 Weakly correlated
188 ZNF626 3 0.0 Weakly correlated
189 ZNF667 3 99.0 Weakly correlated
190 ZNF66 3 0.0 Weakly correlated
191 ZNF727 3 19.6 Weakly correlated
192 ZNF736 3 43.0 Weakly correlated
193 ZNF782 3 99.0 Weakly correlated
194 ZNF799 3 43.0 Weakly correlated
195 ZNF880 3 28.9 Weakly correlated
196 PRDM9 2 0.0 Weakly correlated
197 ZKSCAN3 2 99.0 Weakly correlated
198 ZNF184 2 99.0 Weakly correlated
199 ZNF225 2 74.0 Highly correlated
200 ZNF234 2 99.0 Weakly correlated
201 ZNF253 2 19.6 Weakly correlated
202 ZNF302 2 43.0 Weakly correlated
203 ZNF430 2 19.6 Weakly correlated
204 ZNF439 2 8.6 Weakly correlated
205 ZNF443 2 19.6 Weakly correlated
206 ZNF514 2 94.0 Weakly correlated
207 ZNF551 2 94.0 Weakly correlated
208 ZNF562 2 28.9 Weakly correlated
209 ZNF568 2 99.0 Weakly correlated
210 ZNF570 2 99.0 Weakly correlated
211 ZNF571 2 99.0 Weakly correlated
212 ZNF587 2 28.9 Weakly correlated
213 ZNF681 2 28.9 Weakly correlated
214 ZNF777 2 319.0 Weakly correlated
215 ZNF7 2 99.0 Weakly correlated
216 ZFP92 1 99.0 Weakly correlated
217 ZKSCAN4 1 99.0 Weakly correlated
218 ZNF14 1 69.0 Moderately correlated
219 ZNF177 1 94.0 Weakly correlated
220 ZNF180 1 99.0 Weakly correlated
221 ZNF181 1 94.0 Weakly correlated
222 ZNF205 1 180.0 Weakly correlated
223 ZNF20 1 43.0 Weakly correlated
224 ZNF214 1 99.0 Weakly correlated
225 ZNF215 1 99.0 Weakly correlated
226 ZNF221 1 74.0 Highly correlated
227 ZNF227 1 99.0 Weakly correlated
228 ZNF233 1 99.0 Weakly correlated
229 ZNF256 1 74.0 Highly correlated
230 ZNF398 1 99.0 Weakly correlated
231 ZNF416 1 43.0 Weakly correlated
232 ZNF431 1 28.9 Weakly correlated
233 ZNF432 1 99.0 Weakly correlated
234 ZNF442 1 43.0 Weakly correlated
235 ZNF473 1 43.0 Weakly correlated
236 ZNF500 1 160.0 Weakly correlated
237 ZNF525 1 19.6 Weakly correlated
238 ZNF527 1 99.0 Weakly correlated
239 ZNF529 1 99.0 Weakly correlated
240 ZNF544 1 0.0 Weakly correlated
241 ZNF546 1 99.0 Weakly correlated
242 ZNF566 1 99.0 Weakly correlated
243 ZNF578 1 15.2 Weakly correlated
244 ZNF596 1 94.0 Weakly correlated
245 ZNF624 1 99.0 Weakly correlated
246 ZNF630 1 94.0 Weakly correlated
247 ZNF699 1 99.0 Weakly correlated
248 ZNF705A 1 28.9 Weakly correlated
249 ZNF717 1 0.0 Weakly correlated
250 ZNF718 1 19.6 Weakly correlated
251 ZNF726 1 28.9 Weakly correlated
252 ZNF728 1 19.6 Weakly correlated
253 ZNF747 1 43.0 Weakly correlated
254 ZNF749 1 28.9 Weakly correlated
255 ZNF761 1 19.6 Weakly correlated
256 ZNF772 1 94.0 Weakly correlated
257 ZNF790 1 99.0 Weakly correlated
258 ZNF805 1 99.0 Weakly correlated
259 ZNF813 1 28.9 Weakly correlated
260 ZNF836 1 43.0 Weakly correlated
261 ZNF846 1 74.0 Highly correlated
262 ZNF850 1 28.9 Weakly correlated
263 ZNF860 1 0.0 Weakly correlated
264 ZNF891 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 1020 43.0 Weakly correlated
2 ZNF441 660 43.0 Weakly correlated
3 ZNF519 555 19.6 Weakly correlated
4 ZNF101 513 43.0 Weakly correlated
5 ZNF257 404 0.0 Weakly correlated
6 ZNF182 366 99.0 Weakly correlated
7 ZNF18 321 160.0 Weakly correlated
8 ZNF394 316 99.0 Weakly correlated
9 ZNF506 311 28.9 Weakly correlated
10 ZNF382 282 99.0 Weakly correlated
11 ZNF140 257 99.0 Weakly correlated
12 ZNF610 238 28.9 Weakly correlated
13 ZNF479 215 6.4 Weakly correlated
14 ZFP37 200 99.0 Weakly correlated
15 ZNF429 196 28.9 Weakly correlated
16 ZNF792 176 94.0 Weakly correlated
17 ZNF460 124 74.0 Highly correlated
18 ZNF534 105 19.6 Weakly correlated
19 ZNF202 101 160.0 Weakly correlated
20 ZNF641 92 99.0 Weakly correlated
21 ZNF264 76 99.0 Weakly correlated
22 ZNF695 72 28.9 Weakly correlated
23 ZIM3 62 87.0 Weakly correlated
24 ZNF705B 56 28.9 Weakly correlated
25 ZNF334 51 99.0 Weakly correlated
26 ZNF705D 46 28.9 Weakly correlated
27 ZNF287 39 99.0 Weakly correlated
28 ZNF786 39 99.0 Weakly correlated
29 ZNF554 38 99.0 Weakly correlated
30 ZFP57 33 87.0 Weakly correlated
31 ZNF324 32 99.0 Weakly correlated
32 ZNF263 30 180.0 Weakly correlated
33 ZNF135 29 94.0 Weakly correlated
34 ZNF680 27 28.9 Weakly correlated
35 ZNF445 24 99.0 Weakly correlated
36 ZNF707 23 74.0 Highly correlated
37 ZNF585A 22 99.0 Weakly correlated
38 ZNF485 19 94.0 Weakly correlated
39 ZNF616 19 43.0 Weakly correlated
40 ZNF766 18 43.0 Weakly correlated
41 ZNF141 17 43.0 Weakly correlated
42 ZNF558 17 99.0 Weakly correlated
43 ZNF2 15 99.0 Weakly correlated
44 ZNF468 14 28.9 Weakly correlated
45 ZKSCAN5 13 160.0 Weakly correlated
46 ZNF273 13 28.9 Weakly correlated
47 ZNF701 13 28.9 Weakly correlated
48 ZNF789 12 99.0 Weakly correlated
49 ZNF793 11 99.0 Weakly correlated
50 ZFP69B 10 99.0 Weakly correlated
51 ZNF823 10 43.0 Weakly correlated
52 ZNF723 10 15.2 Weakly correlated
53 ZNF75D 10 94.0 Weakly correlated
54 ZNF597 9 94.0 Weakly correlated
55 ZNF251 8 94.0 Weakly correlated
56 ZNF425 8 94.0 Weakly correlated
57 ZNF585B 8 99.0 Weakly correlated
58 ZFP28 7 99.0 Weakly correlated
59 ZNF28 7 28.9 Weakly correlated
60 ZNF674 7 99.0 Weakly correlated
61 ZNF84 6 99.0 Weakly correlated
62 ZNF8 5 99.0 Weakly correlated
63 ZNF440 5 28.9 Weakly correlated
64 ZNF169 4 94.0 Weakly correlated
65 ZNF735 4 28.9 Weakly correlated
66 ZNF317 4 99.0 Weakly correlated
67 ZNF679 4 28.9 Weakly correlated
68 ZNF222 4 43.0 Weakly correlated
69 ZNF100 3 28.9 Weakly correlated
70 ZNF136 3 74.0 Highly correlated
71 ZNF573 3 94.0 Weakly correlated
72 ZNF677 3 99.0 Weakly correlated
73 ZNF567 3 99.0 Weakly correlated
74 ZNF682 3 28.9 Weakly correlated
75 ZNF283 3 99.0 Weakly correlated
76 ZIK1 2 87.0 Weakly correlated
77 ZKSCAN1 2 160.0 Weakly correlated
78 ZNF133 2 99.0 Weakly correlated
79 ZNF331 2 94.0 Weakly correlated
80 ZNF880 2 28.9 Weakly correlated
81 ZNF189 2 99.0 Weakly correlated
82 ZNF471 2 94.0 Weakly correlated
83 ZNF549 2 87.0 Weakly correlated
84 ZNF613 2 99.0 Weakly correlated
85 ZNF528 2 43.0 Weakly correlated
86 ZNF274 2 99.0 Weakly correlated
87 ZNF320 2 28.9 Weakly correlated
88 ZNF705E 2 0.0 Weakly correlated
89 ZNF282 2 319.0 Weakly correlated
90 ZNF589 2 28.9 Weakly correlated
91 ZNF675 2 8.6 Weakly correlated
92 ZNF343 2 74.0 Highly correlated
93 ZNF671 2 94.0 Weakly correlated
94 PRDM9 1 0.0 Weakly correlated
95 ZNF10 1 99.0 Weakly correlated
96 ZNF132 1 94.0 Weakly correlated
97 ZNF225 1 74.0 Highly correlated
98 ZNF74 1 99.0 Weakly correlated
99 ZNF197 1 99.0 Weakly correlated
100 ZNF337 1 43.0 Weakly correlated
101 ZNF530 1 28.9 Weakly correlated
102 ZNF611 1 19.6 Weakly correlated
103 ZKSCAN8 1 160.0 Weakly correlated
104 ZNF160 1 74.0 Highly correlated
105 ZNF17 1 69.0 Moderately correlated
106 ZNF417 1 28.9 Weakly correlated
107 ZNF560 1 43.0 Weakly correlated
108 ZNF684 1 99.0 Weakly correlated
109 ZNF250 1 99.0 Weakly correlated
110 ZNF333 1 99.0 Weakly correlated
111 ZNF44 1 43.0 Weakly correlated
112 ZNF490 1 43.0 Weakly correlated
113 ZNF587 1 28.9 Weakly correlated
114 ZNF77 1 87.0 Weakly correlated
115 ZNF286A 1 160.0 Weakly correlated
116 ZNF568 1 99.0 Weakly correlated
117 ZNF607 1 43.0 Weakly correlated
118 ZNF736 1 43.0 Weakly correlated
119 ZNF254 1 43.0 Weakly correlated
120 ZNF543 1 99.0 Weakly correlated
121 ZNF627 1 74.0 Highly correlated
122 ZNF716 1 19.6 Weakly correlated
123 ZNF175 1 94.0 Weakly correlated
124 ZNF483 1 99.0 Weakly correlated
125 ZNF584 1 99.0 Weakly correlated
126 ZNF730 1 19.6 Weakly correlated
127 ZNF780A 1 43.0 Weakly correlated
128 ZFP69 1 99.0 Weakly correlated
129 ZNF256 1 74.0 Highly correlated
130 ZNF561 1 43.0 Weakly correlated
131 ZNF563 1 28.9 Weakly correlated
132 ZNF596 1 94.0 Weakly correlated
133 ZNF626 1 0.0 Weakly correlated
134 ZNF816 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Weakly correlated
2 ZFP37 99.0 Weakly correlated
3 ZFP69B 99.0 Weakly correlated
4 ZNF182 99.0 Weakly correlated
5 ZNF18 160.0 Weakly correlated
6 ZNF263 180.0 Weakly correlated
7 ZNF287 99.0 Weakly correlated
8 ZNF28 28.9 Weakly correlated
9 ZNF382 99.0 Weakly correlated
10 ZNF429 28.9 Weakly correlated
11 ZNF441 43.0 Weakly correlated
12 ZNF445 99.0 Weakly correlated
13 ZNF506 28.9 Weakly correlated
14 ZNF554 99.0 Weakly correlated
15 ZNF585A 99.0 Weakly correlated
16 ZNF695 28.9 Weakly correlated
17 ZNF701 28.9 Weakly correlated
18 ZNF792 94.0 Weakly correlated
19 ZNF84 99.0 Weakly correlated