ZRdb KZFP & Repeats
...

SINE_ALUSX4

  • Name
    ALUSX4
  • Repbase
    AluSx4
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000050
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 292 99.0 Weakly correlated
2 ZNF382 280 99.0 Weakly correlated
3 ZNF2 152 99.0 Weakly correlated
4 ZNF284 142 43.0 Weakly correlated
5 ZNF441 140 43.0 Weakly correlated
6 ZNF101 98 43.0 Weakly correlated
7 ZNF18 94 160.0 Weakly correlated
8 ZNF680 87 28.9 Weakly correlated
9 ZFP37 84 99.0 Weakly correlated
10 ZNF324 83 99.0 Weakly correlated
11 ZFP69B 81 99.0 Weakly correlated
12 ZNF558 73 99.0 Weakly correlated
13 ZNF519 69 19.6 Weakly correlated
14 ZNF766 68 43.0 Weakly correlated
15 ZNF182 67 99.0 Weakly correlated
16 ZNF610 60 28.9 Weakly correlated
17 ZKSCAN1 48 160.0 Weakly correlated
18 ZNF140 43 99.0 Weakly correlated
19 ZNF263 42 180.0 Weakly correlated
20 ZNF792 42 94.0 Weakly correlated
21 ZNF705B 41 28.9 Weakly correlated
22 ZNF506 35 28.9 Weakly correlated
23 ZNF589 33 28.9 Weakly correlated
24 ZIM3 31 87.0 Weakly correlated
25 ZNF460 30 74.0 Highly correlated
26 ZNF317 29 99.0 Weakly correlated
27 ZNF534 29 19.6 Weakly correlated
28 ZNF251 27 94.0 Weakly correlated
29 ZNF679 27 28.9 Weakly correlated
30 ZNF175 24 94.0 Weakly correlated
31 ZNF257 24 0.0 Weakly correlated
32 ZNF723 23 15.2 Weakly correlated
33 ZNF585B 22 99.0 Weakly correlated
34 ZNF202 21 160.0 Weakly correlated
35 ZNF707 21 74.0 Highly correlated
36 ZNF705D 18 28.9 Weakly correlated
37 ZNF92 18 28.9 Weakly correlated
38 ZNF429 17 28.9 Weakly correlated
39 ZNF197 16 99.0 Weakly correlated
40 ZNF547 16 74.0 Highly correlated
41 ZNF264 15 99.0 Weakly correlated
42 ZNF28 15 28.9 Weakly correlated
43 ZNF486 15 8.6 Weakly correlated
44 ZNF793 15 99.0 Weakly correlated
45 ZNF479 14 6.4 Weakly correlated
46 ZNF584 13 99.0 Weakly correlated
47 ZNF597 13 94.0 Weakly correlated
48 ZKSCAN8 12 160.0 Weakly correlated
49 ZNF334 12 99.0 Weakly correlated
50 ZNF528 12 43.0 Weakly correlated
51 ZNF641 12 99.0 Weakly correlated
52 ZNF695 12 28.9 Weakly correlated
53 ZNF8 12 99.0 Weakly correlated
54 ZNF133 11 99.0 Weakly correlated
55 ZNF554 11 99.0 Weakly correlated
56 ZNF84 11 99.0 Weakly correlated
57 ZFP57 10 87.0 Weakly correlated
58 ZNF141 10 43.0 Weakly correlated
59 ZNF485 10 94.0 Weakly correlated
60 ZNF585A 9 99.0 Weakly correlated
61 ZNF786 9 99.0 Weakly correlated
62 ZNF75D 8 94.0 Weakly correlated
63 ZNF287 7 99.0 Weakly correlated
64 ZNF490 7 43.0 Weakly correlated
65 ZNF616 7 43.0 Weakly correlated
66 ZNF701 7 28.9 Weakly correlated
67 ZNF136 6 74.0 Highly correlated
68 ZNF169 5 94.0 Weakly correlated
69 ZNF248 5 99.0 Weakly correlated
70 ZNF26 5 99.0 Weakly correlated
71 ZNF425 5 94.0 Weakly correlated
72 ZNF778 5 74.0 Highly correlated
73 ZFP28 4 99.0 Weakly correlated
74 ZNF674 4 99.0 Weakly correlated
75 ZNF160 3 74.0 Highly correlated
76 ZNF274 3 99.0 Weakly correlated
77 ZNF347 3 43.0 Weakly correlated
78 ZNF420 3 94.0 Weakly correlated
79 ZNF430 3 19.6 Weakly correlated
80 ZNF468 3 28.9 Weakly correlated
81 ZNF480 3 43.0 Weakly correlated
82 ZNF560 3 43.0 Weakly correlated
83 ZNF605 3 99.0 Weakly correlated
84 ZNF671 3 94.0 Weakly correlated
85 ZNF735 3 28.9 Weakly correlated
86 ZNF736 3 43.0 Weakly correlated
87 ZNF75A 3 94.0 Weakly correlated
88 ZNF823 3 43.0 Weakly correlated
89 ZNF845 3 28.9 Weakly correlated
90 ZNF93 3 8.6 Weakly correlated
91 ZFP69 2 99.0 Weakly correlated
92 ZKSCAN5 2 160.0 Weakly correlated
93 ZNF124 2 43.0 Weakly correlated
94 ZNF12 2 99.0 Weakly correlated
95 ZNF273 2 28.9 Weakly correlated
96 ZNF282 2 319.0 Weakly correlated
97 ZNF304 2 99.0 Weakly correlated
98 ZNF320 2 28.9 Weakly correlated
99 ZNF440 2 28.9 Weakly correlated
100 ZNF445 2 99.0 Weakly correlated
101 ZNF483 2 99.0 Weakly correlated
102 ZNF510 2 99.0 Weakly correlated
103 ZNF514 2 94.0 Weakly correlated
104 ZNF549 2 87.0 Weakly correlated
105 ZNF563 2 28.9 Weakly correlated
106 ZNF583 2 99.0 Weakly correlated
107 ZNF627 2 74.0 Highly correlated
108 ZNF649 2 28.9 Weakly correlated
109 ZNF682 2 28.9 Weakly correlated
110 ZNF777 2 319.0 Weakly correlated
111 ZNF816 2 28.9 Weakly correlated
112 ZNF81 2 99.0 Weakly correlated
113 ZNF91 2 6.0 Weakly correlated
114 RBAK 1 99.0 Weakly correlated
115 ZKSCAN2 1 180.0 Weakly correlated
116 ZNF10 1 99.0 Weakly correlated
117 ZNF157 1 99.0 Weakly correlated
118 ZNF17 1 69.0 Moderately correlated
119 ZNF180 1 99.0 Weakly correlated
120 ZNF211 1 94.0 Weakly correlated
121 ZNF222 1 43.0 Weakly correlated
122 ZNF230 1 28.9 Weakly correlated
123 ZNF267 1 43.0 Weakly correlated
124 ZNF331 1 94.0 Weakly correlated
125 ZNF333 1 99.0 Weakly correlated
126 ZNF33A 1 99.0 Weakly correlated
127 ZNF343 1 74.0 Highly correlated
128 ZNF354A 1 99.0 Weakly correlated
129 ZNF354B 1 99.0 Weakly correlated
130 ZNF354C 1 99.0 Weakly correlated
131 ZNF433 1 43.0 Weakly correlated
132 ZNF436 1 180.0 Weakly correlated
133 ZNF43 1 43.0 Weakly correlated
134 ZNF44 1 43.0 Weakly correlated
135 ZNF471 1 94.0 Weakly correlated
136 ZNF500 1 160.0 Weakly correlated
137 ZNF527 1 99.0 Weakly correlated
138 ZNF561 1 43.0 Weakly correlated
139 ZNF564 1 74.0 Highly correlated
140 ZNF567 1 99.0 Weakly correlated
141 ZNF578 1 15.2 Weakly correlated
142 ZNF611 1 19.6 Weakly correlated
143 ZNF613 1 99.0 Weakly correlated
144 ZNF675 1 8.6 Weakly correlated
145 ZNF677 1 99.0 Weakly correlated
146 ZNF705E 1 0.0 Weakly correlated
147 ZNF727 1 19.6 Weakly correlated
148 ZNF730 1 19.6 Weakly correlated
149 ZNF74 1 99.0 Weakly correlated
150 ZNF763 1 15.2 Weakly correlated
151 ZNF765 1 8.6 Weakly correlated
152 ZNF780A 1 43.0 Weakly correlated
153 ZNF7 1 99.0 Weakly correlated
154 ZNF85 1 28.9 Weakly correlated
155 ZNF878 1 43.0 Weakly correlated
156 ZNF879 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 129 43.0 Weakly correlated
2 ZNF441 128 43.0 Weakly correlated
3 ZNF101 66 43.0 Weakly correlated
4 ZNF519 62 19.6 Weakly correlated
5 ZNF182 62 99.0 Weakly correlated
6 ZNF382 49 99.0 Weakly correlated
7 ZNF394 46 99.0 Weakly correlated
8 ZNF140 30 99.0 Weakly correlated
9 ZNF18 28 160.0 Weakly correlated
10 ZNF610 28 28.9 Weakly correlated
11 ZNF506 26 28.9 Weakly correlated
12 ZNF792 26 94.0 Weakly correlated
13 ZNF460 26 74.0 Highly correlated
14 ZFP37 18 99.0 Weakly correlated
15 ZNF202 16 160.0 Weakly correlated
16 ZNF429 16 28.9 Weakly correlated
17 ZNF257 13 0.0 Weakly correlated
18 ZNF264 10 99.0 Weakly correlated
19 ZNF334 9 99.0 Weakly correlated
20 ZNF641 8 99.0 Weakly correlated
21 ZNF695 8 28.9 Weakly correlated
22 ZNF534 7 19.6 Weakly correlated
23 ZNF616 6 43.0 Weakly correlated
24 ZIM3 6 87.0 Weakly correlated
25 ZNF141 6 43.0 Weakly correlated
26 ZNF786 6 99.0 Weakly correlated
27 ZNF707 5 74.0 Highly correlated
28 ZNF287 5 99.0 Weakly correlated
29 ZNF425 4 94.0 Weakly correlated
30 ZNF324 4 99.0 Weakly correlated
31 ZNF585A 4 99.0 Weakly correlated
32 ZNF680 4 28.9 Weakly correlated
33 ZNF705D 4 28.9 Weakly correlated
34 ZNF705B 3 28.9 Weakly correlated
35 ZNF674 3 99.0 Weakly correlated
36 ZNF445 2 99.0 Weakly correlated
37 ZNF793 2 99.0 Weakly correlated
38 ZNF823 2 43.0 Weakly correlated
39 ZNF597 2 94.0 Weakly correlated
40 ZNF440 2 28.9 Weakly correlated
41 ZNF766 2 43.0 Weakly correlated
42 ZKSCAN1 1 160.0 Weakly correlated
43 ZNF677 1 99.0 Weakly correlated
44 ZNF28 1 28.9 Weakly correlated
45 ZNF765 1 8.6 Weakly correlated
46 ZKSCAN5 1 160.0 Weakly correlated
47 ZNF736 1 43.0 Weakly correlated
48 ZNF485 1 94.0 Weakly correlated
49 ZNF133 1 99.0 Weakly correlated
50 ZNF75D 1 94.0 Weakly correlated
51 ZNF2 1 99.0 Weakly correlated
52 ZNF263 1 180.0 Weakly correlated
53 ZNF560 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF382 99.0 Weakly correlated
5 ZNF429 28.9 Weakly correlated
6 ZNF506 28.9 Weakly correlated
7 ZNF695 28.9 Weakly correlated
8 ZNF792 94.0 Weakly correlated