ZRdb KZFP & Repeats
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SINE_ALUSX3

  • Name
    ALUSX3
  • Repbase
    AluSx3
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000049
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 973 99.0 Weakly correlated
2 ZNF394 900 99.0 Weakly correlated
3 ZNF441 535 43.0 Weakly correlated
4 ZNF2 497 99.0 Weakly correlated
5 ZNF284 475 43.0 Weakly correlated
6 ZFP37 343 99.0 Weakly correlated
7 ZNF18 326 160.0 Weakly correlated
8 ZFP69B 274 99.0 Weakly correlated
9 ZNF766 272 43.0 Weakly correlated
10 ZNF101 270 43.0 Weakly correlated
11 ZNF324 266 99.0 Weakly correlated
12 ZNF558 248 99.0 Weakly correlated
13 ZNF519 223 19.6 Weakly correlated
14 ZNF680 222 28.9 Weakly correlated
15 ZNF182 165 99.0 Weakly correlated
16 ZNF610 165 28.9 Weakly correlated
17 ZNF257 164 0.0 Weakly correlated
18 ZNF263 157 180.0 Weakly correlated
19 ZKSCAN1 150 160.0 Weakly correlated
20 ZNF705B 150 28.9 Weakly correlated
21 ZNF792 141 94.0 Weakly correlated
22 ZNF589 136 28.9 Weakly correlated
23 ZNF534 104 19.6 Weakly correlated
24 ZIM3 101 87.0 Weakly correlated
25 ZNF679 98 28.9 Weakly correlated
26 ZNF140 94 99.0 Weakly correlated
27 ZNF175 92 94.0 Weakly correlated
28 ZNF251 88 94.0 Weakly correlated
29 ZNF506 86 28.9 Weakly correlated
30 ZNF705D 78 28.9 Weakly correlated
31 ZNF479 76 6.4 Weakly correlated
32 ZNF317 73 99.0 Weakly correlated
33 ZNF641 71 99.0 Weakly correlated
34 ZNF695 71 28.9 Weakly correlated
35 ZNF8 70 99.0 Weakly correlated
36 ZNF584 69 99.0 Weakly correlated
37 ZKSCAN8 64 160.0 Weakly correlated
38 ZNF460 63 74.0 Highly correlated
39 ZFP57 59 87.0 Weakly correlated
40 ZNF197 58 99.0 Weakly correlated
41 ZNF264 55 99.0 Weakly correlated
42 ZNF547 55 74.0 Highly correlated
43 ZNF202 54 160.0 Weakly correlated
44 ZNF585B 53 99.0 Weakly correlated
45 ZNF92 53 28.9 Weakly correlated
46 ZNF723 51 15.2 Weakly correlated
47 ZNF429 48 28.9 Weakly correlated
48 ZNF554 48 99.0 Weakly correlated
49 ZNF701 41 28.9 Weakly correlated
50 ZNF707 41 74.0 Highly correlated
51 ZNF28 39 28.9 Weakly correlated
52 ZNF486 34 8.6 Weakly correlated
53 ZNF75D 32 94.0 Weakly correlated
54 ZNF528 28 43.0 Weakly correlated
55 ZNF793 28 99.0 Weakly correlated
56 ZNF585A 27 99.0 Weakly correlated
57 ZNF274 26 99.0 Weakly correlated
58 ZNF287 26 99.0 Weakly correlated
59 ZNF597 26 94.0 Weakly correlated
60 ZNF485 24 94.0 Weakly correlated
61 ZNF490 24 43.0 Weakly correlated
62 ZNF334 23 99.0 Weakly correlated
63 ZNF786 23 99.0 Weakly correlated
64 ZNF320 22 28.9 Weakly correlated
65 ZNF100 20 28.9 Weakly correlated
66 ZFP28 19 99.0 Weakly correlated
67 ZNF248 19 99.0 Weakly correlated
68 ZNF136 17 74.0 Highly correlated
69 ZNF273 17 28.9 Weakly correlated
70 ZNF133 16 99.0 Weakly correlated
71 ZNF445 16 99.0 Weakly correlated
72 ZNF778 16 74.0 Highly correlated
73 ZNF84 16 99.0 Weakly correlated
74 ZNF135 15 94.0 Weakly correlated
75 ZKSCAN5 14 160.0 Weakly correlated
76 ZNF169 13 94.0 Weakly correlated
77 ZNF425 13 94.0 Weakly correlated
78 ZNF471 13 94.0 Weakly correlated
79 ZNF674 13 99.0 Weakly correlated
80 ZNF735 13 28.9 Weakly correlated
81 ZNF160 12 74.0 Highly correlated
82 ZNF354C 12 99.0 Weakly correlated
83 ZNF823 12 43.0 Weakly correlated
84 ZNF189 11 99.0 Weakly correlated
85 ZNF468 10 28.9 Weakly correlated
86 ZNF730 10 19.6 Weakly correlated
87 ZNF141 9 43.0 Weakly correlated
88 ZNF222 9 43.0 Weakly correlated
89 ZNF436 9 180.0 Weakly correlated
90 ZNF549 9 87.0 Weakly correlated
91 ZNF671 9 94.0 Weakly correlated
92 ZNF879 9 99.0 Weakly correlated
93 ZKSCAN2 8 180.0 Weakly correlated
94 ZNF878 8 43.0 Weakly correlated
95 ZNF91 8 6.0 Weakly correlated
96 ZNF282 7 319.0 Weakly correlated
97 ZNF605 7 99.0 Weakly correlated
98 ZNF26 6 99.0 Weakly correlated
99 ZNF331 6 94.0 Weakly correlated
100 ZNF347 6 43.0 Weakly correlated
101 ZNF354A 6 99.0 Weakly correlated
102 ZNF560 6 43.0 Weakly correlated
103 ZNF567 6 99.0 Weakly correlated
104 ZNF573 6 94.0 Weakly correlated
105 ZNF675 6 8.6 Weakly correlated
106 ZNF780A 6 43.0 Weakly correlated
107 ZNF81 6 99.0 Weakly correlated
108 ZNF230 5 28.9 Weakly correlated
109 ZNF30 5 94.0 Weakly correlated
110 ZNF343 5 74.0 Highly correlated
111 ZNF44 5 43.0 Weakly correlated
112 ZNF611 5 19.6 Weakly correlated
113 ZNF616 5 43.0 Weakly correlated
114 ZNF677 5 99.0 Weakly correlated
115 ZNF682 5 28.9 Weakly correlated
116 ZFP69 4 99.0 Weakly correlated
117 ZNF302 4 43.0 Weakly correlated
118 ZNF337 4 43.0 Weakly correlated
119 ZNF33A 4 99.0 Weakly correlated
120 ZNF563 4 28.9 Weakly correlated
121 ZNF583 4 99.0 Weakly correlated
122 ZNF765 4 8.6 Weakly correlated
123 ZNF789 4 99.0 Weakly correlated
124 ZNF93 4 8.6 Weakly correlated
125 ZNF17 3 69.0 Moderately correlated
126 ZNF211 3 94.0 Weakly correlated
127 ZNF304 3 99.0 Weakly correlated
128 ZNF333 3 99.0 Weakly correlated
129 ZNF41 3 99.0 Weakly correlated
130 ZNF483 3 99.0 Weakly correlated
131 RBAK 2 99.0 Weakly correlated
132 ZFP14 2 99.0 Weakly correlated
133 ZFP30 2 99.0 Weakly correlated
134 ZNF10 2 99.0 Weakly correlated
135 ZNF124 2 43.0 Weakly correlated
136 ZNF12 2 99.0 Weakly correlated
137 ZNF132 2 94.0 Weakly correlated
138 ZNF383 2 99.0 Weakly correlated
139 ZNF418 2 43.0 Weakly correlated
140 ZNF433 2 43.0 Weakly correlated
141 ZNF440 2 28.9 Weakly correlated
142 ZNF480 2 43.0 Weakly correlated
143 ZNF514 2 94.0 Weakly correlated
144 ZNF527 2 99.0 Weakly correlated
145 ZNF530 2 28.9 Weakly correlated
146 ZNF543 2 99.0 Weakly correlated
147 ZNF559 2 74.0 Highly correlated
148 ZNF565 2 99.0 Weakly correlated
149 ZNF569 2 99.0 Weakly correlated
150 ZNF607 2 43.0 Weakly correlated
151 ZNF613 2 99.0 Weakly correlated
152 ZNF627 2 74.0 Highly correlated
153 ZNF736 2 43.0 Weakly correlated
154 ZNF749 2 28.9 Weakly correlated
155 ZNF75A 2 94.0 Weakly correlated
156 ZNF761 2 19.6 Weakly correlated
157 ZNF776 2 43.0 Weakly correlated
158 ZNF799 2 43.0 Weakly correlated
159 ZNF816 2 28.9 Weakly correlated
160 ZNF845 2 28.9 Weakly correlated
161 ZNF846 2 74.0 Highly correlated
162 ZNF850 2 28.9 Weakly correlated
163 ZNF85 2 28.9 Weakly correlated
164 ZNF860 2 0.0 Weakly correlated
165 PRDM9 1 0.0 Weakly correlated
166 ZFP82 1 99.0 Weakly correlated
167 ZIK1 1 87.0 Weakly correlated
168 ZKSCAN4 1 99.0 Weakly correlated
169 ZNF157 1 99.0 Weakly correlated
170 ZNF184 1 99.0 Weakly correlated
171 ZNF19 1 99.0 Weakly correlated
172 ZNF215 1 99.0 Weakly correlated
173 ZNF224 1 69.0 Moderately correlated
174 ZNF225 1 74.0 Highly correlated
175 ZNF250 1 99.0 Weakly correlated
176 ZNF254 1 43.0 Weakly correlated
177 ZNF256 1 74.0 Highly correlated
178 ZNF267 1 43.0 Weakly correlated
179 ZNF283 1 99.0 Weakly correlated
180 ZNF420 1 94.0 Weakly correlated
181 ZNF431 1 28.9 Weakly correlated
182 ZNF43 1 43.0 Weakly correlated
183 ZNF45 1 99.0 Weakly correlated
184 ZNF461 1 99.0 Weakly correlated
185 ZNF510 1 99.0 Weakly correlated
186 ZNF548 1 94.0 Weakly correlated
187 ZNF557 1 15.2 Weakly correlated
188 ZNF562 1 28.9 Weakly correlated
189 ZNF564 1 74.0 Highly correlated
190 ZNF578 1 15.2 Weakly correlated
191 ZNF586 1 43.0 Weakly correlated
192 ZNF596 1 94.0 Weakly correlated
193 ZNF599 1 99.0 Weakly correlated
194 ZNF620 1 99.0 Weakly correlated
195 ZNF626 1 0.0 Weakly correlated
196 ZNF649 1 28.9 Weakly correlated
197 ZNF658 1 99.0 Weakly correlated
198 ZNF667 1 99.0 Weakly correlated
199 ZNF684 1 99.0 Weakly correlated
200 ZNF700 1 28.9 Weakly correlated
201 ZNF726 1 28.9 Weakly correlated
202 ZNF727 1 19.6 Weakly correlated
203 ZNF74 1 99.0 Weakly correlated
204 ZNF782 1 99.0 Weakly correlated
205 ZNF7 1 99.0 Weakly correlated
206 ZNF805 1 99.0 Weakly correlated
207 ZNF829 1 99.0 Weakly correlated
208 ZNF836 1 43.0 Weakly correlated
209 ZNF880 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 485 43.0 Weakly correlated
2 ZNF284 428 43.0 Weakly correlated
3 ZNF519 206 19.6 Weakly correlated
4 ZNF101 171 43.0 Weakly correlated
5 ZNF182 152 99.0 Weakly correlated
6 ZNF257 113 0.0 Weakly correlated
7 ZNF394 104 99.0 Weakly correlated
8 ZNF18 95 160.0 Weakly correlated
9 ZNF792 81 94.0 Weakly correlated
10 ZNF610 78 28.9 Weakly correlated
11 ZNF140 76 99.0 Weakly correlated
12 ZNF506 71 28.9 Weakly correlated
13 ZFP37 65 99.0 Weakly correlated
14 ZNF460 60 74.0 Highly correlated
15 ZNF641 47 99.0 Weakly correlated
16 ZNF695 44 28.9 Weakly correlated
17 ZNF202 41 160.0 Weakly correlated
18 ZNF264 39 99.0 Weakly correlated
19 ZNF534 39 19.6 Weakly correlated
20 ZNF429 38 28.9 Weakly correlated
21 ZNF382 24 99.0 Weakly correlated
22 ZNF705B 21 28.9 Weakly correlated
23 ZNF705D 21 28.9 Weakly correlated
24 ZNF263 17 180.0 Weakly correlated
25 ZNF287 17 99.0 Weakly correlated
26 ZNF786 16 99.0 Weakly correlated
27 ZNF445 13 99.0 Weakly correlated
28 ZFP57 12 87.0 Weakly correlated
29 ZIM3 12 87.0 Weakly correlated
30 ZNF334 12 99.0 Weakly correlated
31 ZNF324 11 99.0 Weakly correlated
32 ZNF135 9 94.0 Weakly correlated
33 ZKSCAN5 8 160.0 Weakly correlated
34 ZNF425 8 94.0 Weakly correlated
35 ZNF680 8 28.9 Weakly correlated
36 ZNF674 8 99.0 Weakly correlated
37 ZNF554 8 99.0 Weakly correlated
38 ZFP28 6 99.0 Weakly correlated
39 ZNF823 6 43.0 Weakly correlated
40 ZNF558 6 99.0 Weakly correlated
41 ZNF28 5 28.9 Weakly correlated
42 ZNF616 5 43.0 Weakly correlated
43 ZNF2 5 99.0 Weakly correlated
44 ZNF585A 4 99.0 Weakly correlated
45 ZNF671 4 94.0 Weakly correlated
46 ZNF251 4 94.0 Weakly correlated
47 ZNF485 4 94.0 Weakly correlated
48 ZNF766 4 43.0 Weakly correlated
49 ZKSCAN1 3 160.0 Weakly correlated
50 ZNF169 3 94.0 Weakly correlated
51 ZNF701 3 28.9 Weakly correlated
52 ZNF789 3 99.0 Weakly correlated
53 ZNF793 3 99.0 Weakly correlated
54 ZNF585B 3 99.0 Weakly correlated
55 ZNF597 3 94.0 Weakly correlated
56 ZNF222 3 43.0 Weakly correlated
57 ZNF468 3 28.9 Weakly correlated
58 ZNF84 3 99.0 Weakly correlated
59 ZNF132 2 94.0 Weakly correlated
60 ZNF136 2 74.0 Highly correlated
61 ZNF197 2 99.0 Weakly correlated
62 ZNF273 2 28.9 Weakly correlated
63 ZNF347 2 43.0 Weakly correlated
64 ZNF490 2 43.0 Weakly correlated
65 ZNF528 2 43.0 Weakly correlated
66 ZNF479 2 6.4 Weakly correlated
67 ZNF723 2 15.2 Weakly correlated
68 ZNF735 2 28.9 Weakly correlated
69 ZNF780A 2 43.0 Weakly correlated
70 ZNF878 2 43.0 Weakly correlated
71 ZNF141 2 43.0 Weakly correlated
72 ZNF589 2 28.9 Weakly correlated
73 ZNF248 2 99.0 Weakly correlated
74 ZNF560 2 43.0 Weakly correlated
75 ZNF679 2 28.9 Weakly correlated
76 ZNF749 2 28.9 Weakly correlated
77 ZNF707 2 74.0 Highly correlated
78 ZNF75D 2 94.0 Weakly correlated
79 PRDM9 1 0.0 Weakly correlated
80 ZFP69B 1 99.0 Weakly correlated
81 ZIK1 1 87.0 Weakly correlated
82 ZNF133 1 99.0 Weakly correlated
83 ZNF486 1 8.6 Weakly correlated
84 ZNF567 1 99.0 Weakly correlated
85 ZNF613 1 99.0 Weakly correlated
86 ZNF7 1 99.0 Weakly correlated
87 ZNF160 1 74.0 Highly correlated
88 ZNF189 1 99.0 Weakly correlated
89 ZNF282 1 319.0 Weakly correlated
90 ZNF471 1 94.0 Weakly correlated
91 ZNF677 1 99.0 Weakly correlated
92 ZNF343 1 74.0 Highly correlated
93 ZNF549 1 87.0 Weakly correlated
94 ZNF584 1 99.0 Weakly correlated
95 ZNF879 1 99.0 Weakly correlated
96 ZFP69 1 99.0 Weakly correlated
97 ZNF225 1 74.0 Highly correlated
98 ZNF26 1 99.0 Weakly correlated
99 ZNF317 1 99.0 Weakly correlated
100 ZNF461 1 99.0 Weakly correlated
101 ZNF880 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Weakly correlated
2 ZFP37 99.0 Weakly correlated
3 ZFP57 87.0 Weakly correlated
4 ZKSCAN5 160.0 Weakly correlated
5 ZNF182 99.0 Weakly correlated
6 ZNF18 160.0 Weakly correlated
7 ZNF263 180.0 Weakly correlated
8 ZNF287 99.0 Weakly correlated
9 ZNF382 99.0 Weakly correlated
10 ZNF429 28.9 Weakly correlated
11 ZNF445 99.0 Weakly correlated
12 ZNF506 28.9 Weakly correlated
13 ZNF554 99.0 Weakly correlated
14 ZNF680 28.9 Weakly correlated
15 ZNF695 28.9 Weakly correlated
16 ZNF792 94.0 Weakly correlated