ZRdb KZFP & Repeats
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SINE_ALUSX1

  • Name
    ALUSX1
  • Repbase
    AluSx1
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000048
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 3447 99.0 Weakly correlated
2 ZNF382 3365 99.0 Weakly correlated
3 ZNF2 1754 99.0 Weakly correlated
4 ZNF284 1508 43.0 Weakly correlated
5 ZNF441 1365 43.0 Weakly correlated
6 ZFP37 1291 99.0 Weakly correlated
7 ZNF18 1038 160.0 Weakly correlated
8 ZNF101 1016 43.0 Weakly correlated
9 ZNF766 965 43.0 Weakly correlated
10 ZFP69B 939 99.0 Weakly correlated
11 ZNF324 867 99.0 Weakly correlated
12 ZNF680 830 28.9 Weakly correlated
13 ZNF558 821 99.0 Weakly correlated
14 ZNF519 803 19.6 Weakly correlated
15 ZNF257 633 0.0 Weakly correlated
16 ZNF610 611 28.9 Weakly correlated
17 ZNF705B 591 28.9 Weakly correlated
18 ZNF182 535 99.0 Weakly correlated
19 ZKSCAN1 516 160.0 Weakly correlated
20 ZNF263 480 180.0 Weakly correlated
21 ZNF792 460 94.0 Weakly correlated
22 ZIM3 432 87.0 Weakly correlated
23 ZNF140 429 99.0 Weakly correlated
24 ZNF175 419 94.0 Weakly correlated
25 ZNF589 415 28.9 Weakly correlated
26 ZNF479 366 6.4 Weakly correlated
27 ZNF534 342 19.6 Weakly correlated
28 ZNF506 333 28.9 Weakly correlated
29 ZNF317 332 99.0 Weakly correlated
30 ZNF251 310 94.0 Weakly correlated
31 ZNF705D 309 28.9 Weakly correlated
32 ZKSCAN8 274 160.0 Weakly correlated
33 ZNF429 241 28.9 Weakly correlated
34 ZNF547 241 74.0 Highly correlated
35 ZNF679 230 28.9 Weakly correlated
36 ZNF197 227 99.0 Weakly correlated
37 ZNF723 227 15.2 Weakly correlated
38 ZNF584 225 99.0 Weakly correlated
39 ZNF585B 225 99.0 Weakly correlated
40 ZNF92 192 28.9 Weakly correlated
41 ZNF202 188 160.0 Weakly correlated
42 ZNF264 181 99.0 Weakly correlated
43 ZNF554 180 99.0 Weakly correlated
44 ZFP57 176 87.0 Weakly correlated
45 ZNF8 175 99.0 Weakly correlated
46 ZNF641 174 99.0 Weakly correlated
47 ZNF460 171 74.0 Highly correlated
48 ZNF707 166 74.0 Highly correlated
49 ZNF695 157 28.9 Weakly correlated
50 ZNF793 154 99.0 Weakly correlated
51 ZNF28 138 28.9 Weakly correlated
52 ZNF701 125 28.9 Weakly correlated
53 ZNF597 120 94.0 Weakly correlated
54 ZNF486 116 8.6 Weakly correlated
55 ZNF528 113 43.0 Weakly correlated
56 ZNF274 103 99.0 Weakly correlated
57 ZNF75D 98 94.0 Weakly correlated
58 ZNF778 92 74.0 Highly correlated
59 ZNF485 85 94.0 Weakly correlated
60 ZNF84 84 99.0 Weakly correlated
61 ZNF334 78 99.0 Weakly correlated
62 ZNF585A 74 99.0 Weakly correlated
63 ZNF133 69 99.0 Weakly correlated
64 ZNF287 67 99.0 Weakly correlated
65 ZNF273 60 28.9 Weakly correlated
66 ZNF425 57 94.0 Weakly correlated
67 ZNF490 57 43.0 Weakly correlated
68 ZNF136 56 74.0 Highly correlated
69 ZNF549 52 87.0 Weakly correlated
70 ZKSCAN5 50 160.0 Weakly correlated
71 ZNF786 49 99.0 Weakly correlated
72 ZNF436 48 180.0 Weakly correlated
73 ZNF135 46 94.0 Weakly correlated
74 ZFP28 45 99.0 Weakly correlated
75 ZNF320 45 28.9 Weakly correlated
76 ZNF682 40 28.9 Weakly correlated
77 ZNF471 39 94.0 Weakly correlated
78 ZNF735 39 28.9 Weakly correlated
79 ZNF141 38 43.0 Weakly correlated
80 ZNF248 38 99.0 Weakly correlated
81 ZNF445 38 99.0 Weakly correlated
82 ZNF823 38 43.0 Weakly correlated
83 ZNF100 37 28.9 Weakly correlated
84 ZNF189 36 99.0 Weakly correlated
85 ZNF331 35 94.0 Weakly correlated
86 ZNF780A 35 43.0 Weakly correlated
87 ZNF616 34 43.0 Weakly correlated
88 ZNF671 34 94.0 Weakly correlated
89 ZNF468 33 28.9 Weakly correlated
90 ZNF675 33 8.6 Weakly correlated
91 ZNF160 31 74.0 Highly correlated
92 ZNF354C 31 99.0 Weakly correlated
93 ZNF674 29 99.0 Weakly correlated
94 ZNF169 28 94.0 Weakly correlated
95 ZNF879 25 99.0 Weakly correlated
96 ZNF560 24 43.0 Weakly correlated
97 ZNF878 24 43.0 Weakly correlated
98 ZFP69 22 99.0 Weakly correlated
99 ZNF350 22 99.0 Weakly correlated
100 ZNF354A 22 99.0 Weakly correlated
101 ZNF26 20 99.0 Weakly correlated
102 ZNF605 20 99.0 Weakly correlated
103 ZNF91 20 6.0 Weakly correlated
104 ZNF282 19 319.0 Weakly correlated
105 ZNF730 19 19.6 Weakly correlated
106 ZNF85 19 28.9 Weakly correlated
107 ZNF563 17 28.9 Weakly correlated
108 ZNF224 16 69.0 Moderately correlated
109 ZNF347 16 43.0 Weakly correlated
110 ZNF510 16 99.0 Weakly correlated
111 ZNF583 16 99.0 Weakly correlated
112 ZNF573 15 94.0 Weakly correlated
113 ZNF81 15 99.0 Weakly correlated
114 ZNF10 14 99.0 Weakly correlated
115 ZNF230 14 28.9 Weakly correlated
116 ZNF543 14 99.0 Weakly correlated
117 ZNF75A 14 94.0 Weakly correlated
118 ZNF343 13 74.0 Highly correlated
119 ZNF44 13 43.0 Weakly correlated
120 ZFP30 12 99.0 Weakly correlated
121 ZNF222 12 43.0 Weakly correlated
122 ZNF440 12 28.9 Weakly correlated
123 ZNF649 12 28.9 Weakly correlated
124 ZNF157 11 99.0 Weakly correlated
125 ZNF420 11 94.0 Weakly correlated
126 ZNF677 11 99.0 Weakly correlated
127 ZNF736 11 43.0 Weakly correlated
128 ZNF765 11 8.6 Weakly correlated
129 ZNF845 11 28.9 Weakly correlated
130 ZKSCAN2 10 180.0 Weakly correlated
131 ZNF211 10 94.0 Weakly correlated
132 ZNF283 10 99.0 Weakly correlated
133 ZNF304 10 99.0 Weakly correlated
134 ZNF417 10 28.9 Weakly correlated
135 ZNF530 10 28.9 Weakly correlated
136 ZNF559 10 74.0 Highly correlated
137 ZNF567 10 99.0 Weakly correlated
138 ZNF93 10 8.6 Weakly correlated
139 ZNF33A 9 99.0 Weakly correlated
140 ZNF43 9 43.0 Weakly correlated
141 ZNF483 9 99.0 Weakly correlated
142 ZNF484 9 99.0 Weakly correlated
143 ZNF555 9 94.0 Weakly correlated
144 ZNF564 9 74.0 Highly correlated
145 ZNF611 9 19.6 Weakly correlated
146 ZNF613 9 99.0 Weakly correlated
147 ZNF669 9 43.0 Weakly correlated
148 ZNF777 9 319.0 Weakly correlated
149 ZNF789 9 99.0 Weakly correlated
150 ZNF124 8 43.0 Weakly correlated
151 ZNF586 8 43.0 Weakly correlated
152 ZNF587 8 28.9 Weakly correlated
153 ZNF627 8 74.0 Highly correlated
154 ZNF816 8 28.9 Weakly correlated
155 ZFP14 7 99.0 Weakly correlated
156 ZIK1 7 87.0 Weakly correlated
157 ZNF17 7 69.0 Moderately correlated
158 ZNF454 7 99.0 Weakly correlated
159 ZNF571 7 99.0 Weakly correlated
160 ZNF607 7 43.0 Weakly correlated
161 ZNF700 7 28.9 Weakly correlated
162 ZNF234 6 99.0 Weakly correlated
163 ZNF337 6 43.0 Weakly correlated
164 ZNF433 6 43.0 Weakly correlated
165 ZNF684 6 99.0 Weakly correlated
166 ZNF776 6 43.0 Weakly correlated
167 ZFP82 5 99.0 Weakly correlated
168 ZNF12 5 99.0 Weakly correlated
169 ZNF180 5 99.0 Weakly correlated
170 ZNF267 5 43.0 Weakly correlated
171 ZNF285 5 94.0 Weakly correlated
172 ZNF286A 5 160.0 Weakly correlated
173 ZNF333 5 99.0 Weakly correlated
174 ZNF430 5 19.6 Weakly correlated
175 ZNF480 5 43.0 Weakly correlated
176 ZNF561 5 43.0 Weakly correlated
177 ZNF596 5 94.0 Weakly correlated
178 RBAK 4 99.0 Weakly correlated
179 ZNF225 4 74.0 Highly correlated
180 ZNF302 4 43.0 Weakly correlated
181 ZNF30 4 94.0 Weakly correlated
182 ZNF383 4 99.0 Weakly correlated
183 ZNF41 4 99.0 Weakly correlated
184 ZNF500 4 160.0 Weakly correlated
185 ZNF514 4 94.0 Weakly correlated
186 ZNF565 4 99.0 Weakly correlated
187 ZNF658 4 99.0 Weakly correlated
188 ZNF705E 4 0.0 Weakly correlated
189 ZNF716 4 19.6 Weakly correlated
190 ZNF808 4 19.6 Weakly correlated
191 ZNF114 3 28.9 Weakly correlated
192 ZNF132 3 94.0 Weakly correlated
193 ZNF154 3 94.0 Weakly correlated
194 ZNF184 3 99.0 Weakly correlated
195 ZNF253 3 19.6 Weakly correlated
196 ZNF37A 3 99.0 Weakly correlated
197 ZNF557 3 15.2 Weakly correlated
198 ZNF566 3 99.0 Weakly correlated
199 ZNF595 3 43.0 Weakly correlated
200 ZNF614 3 99.0 Weakly correlated
201 ZNF66 3 0.0 Weakly correlated
202 ZNF699 3 99.0 Weakly correlated
203 ZNF763 3 15.2 Weakly correlated
204 ZNF77 3 87.0 Weakly correlated
205 ZNF791 3 87.0 Weakly correlated
206 ZNF799 3 43.0 Weakly correlated
207 ZNF7 3 99.0 Weakly correlated
208 ZNF813 3 28.9 Weakly correlated
209 ZNF836 3 43.0 Weakly correlated
210 ZFP1 2 99.0 Weakly correlated
211 ZNF177 2 94.0 Weakly correlated
212 ZNF20 2 43.0 Weakly correlated
213 ZNF227 2 99.0 Weakly correlated
214 ZNF250 2 99.0 Weakly correlated
215 ZNF34 2 99.0 Weakly correlated
216 ZNF354B 2 99.0 Weakly correlated
217 ZNF419 2 28.9 Weakly correlated
218 ZNF432 2 99.0 Weakly correlated
219 ZNF527 2 99.0 Weakly correlated
220 ZNF562 2 28.9 Weakly correlated
221 ZNF568 2 99.0 Weakly correlated
222 ZNF578 2 15.2 Weakly correlated
223 ZNF57 2 28.9 Weakly correlated
224 ZNF615 2 99.0 Weakly correlated
225 ZNF624 2 99.0 Weakly correlated
226 ZNF626 2 0.0 Weakly correlated
227 ZNF681 2 28.9 Weakly correlated
228 ZNF718 2 19.6 Weakly correlated
229 ZNF761 2 19.6 Weakly correlated
230 ZNF785 2 94.0 Weakly correlated
231 ZNF846 2 74.0 Highly correlated
232 ZNF850 2 28.9 Weakly correlated
233 PRDM9 1 0.0 Weakly correlated
234 ZFP90 1 99.0 Weakly correlated
235 ZIM2 1 0.0 Weakly correlated
236 ZKSCAN3 1 99.0 Weakly correlated
237 ZNF214 1 99.0 Weakly correlated
238 ZNF233 1 99.0 Weakly correlated
239 ZNF254 1 43.0 Weakly correlated
240 ZNF300 1 99.0 Weakly correlated
241 ZNF311 1 99.0 Weakly correlated
242 ZNF33B 1 99.0 Weakly correlated
243 ZNF3 1 160.0 Weakly correlated
244 ZNF418 1 43.0 Weakly correlated
245 ZNF431 1 28.9 Weakly correlated
246 ZNF439 1 8.6 Weakly correlated
247 ZNF442 1 43.0 Weakly correlated
248 ZNF45 1 99.0 Weakly correlated
249 ZNF461 1 99.0 Weakly correlated
250 ZNF470 1 99.0 Weakly correlated
251 ZNF496 1 99.0 Weakly correlated
252 ZNF540 1 87.0 Weakly correlated
253 ZNF544 1 0.0 Weakly correlated
254 ZNF550 1 94.0 Weakly correlated
255 ZNF551 1 94.0 Weakly correlated
256 ZNF569 1 99.0 Weakly correlated
257 ZNF570 1 99.0 Weakly correlated
258 ZNF577 1 94.0 Weakly correlated
259 ZNF582 1 99.0 Weakly correlated
260 ZNF587B 1 8.6 Weakly correlated
261 ZNF667 1 99.0 Weakly correlated
262 ZNF689 1 99.0 Weakly correlated
263 ZNF705G 1 28.9 Weakly correlated
264 ZNF727 1 19.6 Weakly correlated
265 ZNF728 1 19.6 Weakly correlated
266 ZNF747 1 43.0 Weakly correlated
267 ZNF74 1 99.0 Weakly correlated
268 ZNF772 1 94.0 Weakly correlated
269 ZNF780B 1 74.0 Highly correlated
270 ZNF782 1 99.0 Weakly correlated
271 ZNF860 1 0.0 Weakly correlated
272 ZNF880 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 1369 43.0 Weakly correlated
2 ZNF441 1200 43.0 Weakly correlated
3 ZNF519 743 19.6 Weakly correlated
4 ZNF101 672 43.0 Weakly correlated
5 ZNF182 466 99.0 Weakly correlated
6 ZNF257 452 0.0 Weakly correlated
7 ZNF394 424 99.0 Weakly correlated
8 ZNF382 328 99.0 Weakly correlated
9 ZNF18 321 160.0 Weakly correlated
10 ZNF610 307 28.9 Weakly correlated
11 ZNF140 303 99.0 Weakly correlated
12 ZNF792 266 94.0 Weakly correlated
13 ZNF506 248 28.9 Weakly correlated
14 ZFP37 245 99.0 Weakly correlated
15 ZNF429 199 28.9 Weakly correlated
16 ZNF460 157 74.0 Highly correlated
17 ZNF202 129 160.0 Weakly correlated
18 ZNF264 122 99.0 Weakly correlated
19 ZNF479 108 6.4 Weakly correlated
20 ZNF641 103 99.0 Weakly correlated
21 ZNF695 102 28.9 Weakly correlated
22 ZNF534 93 19.6 Weakly correlated
23 ZNF705B 73 28.9 Weakly correlated
24 ZIM3 64 87.0 Weakly correlated
25 ZNF705D 64 28.9 Weakly correlated
26 ZNF334 51 99.0 Weakly correlated
27 ZNF680 46 28.9 Weakly correlated
28 ZNF287 46 99.0 Weakly correlated
29 ZFP57 36 87.0 Weakly correlated
30 ZNF786 32 99.0 Weakly correlated
31 ZNF445 30 99.0 Weakly correlated
32 ZNF554 30 99.0 Weakly correlated
33 ZNF616 29 43.0 Weakly correlated
34 ZNF135 27 94.0 Weakly correlated
35 ZNF425 27 94.0 Weakly correlated
36 ZNF485 27 94.0 Weakly correlated
37 ZNF263 24 180.0 Weakly correlated
38 ZNF780A 22 43.0 Weakly correlated
39 ZNF707 22 74.0 Highly correlated
40 ZNF2 22 99.0 Weakly correlated
41 ZNF324 22 99.0 Weakly correlated
42 ZNF766 19 43.0 Weakly correlated
43 ZNF585A 19 99.0 Weakly correlated
44 ZNF793 19 99.0 Weakly correlated
45 ZNF28 16 28.9 Weakly correlated
46 ZNF558 15 99.0 Weakly correlated
47 ZNF679 14 28.9 Weakly correlated
48 ZNF823 14 43.0 Weakly correlated
49 ZNF141 13 43.0 Weakly correlated
50 ZNF84 13 99.0 Weakly correlated
51 ZFP69B 11 99.0 Weakly correlated
52 ZKSCAN5 11 160.0 Weakly correlated
53 ZNF468 11 28.9 Weakly correlated
54 ZNF674 11 99.0 Weakly correlated
55 ZNF701 11 28.9 Weakly correlated
56 ZNF273 9 28.9 Weakly correlated
57 ZNF75D 8 94.0 Weakly correlated
58 ZNF585B 8 99.0 Weakly correlated
59 ZNF597 7 94.0 Weakly correlated
60 ZNF547 7 74.0 Highly correlated
61 ZNF587 7 28.9 Weakly correlated
62 ZNF440 6 28.9 Weakly correlated
63 ZNF251 6 94.0 Weakly correlated
64 ZNF675 6 8.6 Weakly correlated
65 ZNF417 5 28.9 Weakly correlated
66 ZNF560 5 43.0 Weakly correlated
67 ZNF765 5 8.6 Weakly correlated
68 ZNF8 5 99.0 Weakly correlated
69 ZNF169 4 94.0 Weakly correlated
70 ZNF222 4 43.0 Weakly correlated
71 ZNF347 4 43.0 Weakly correlated
72 ZNF343 4 74.0 Highly correlated
73 ZNF723 4 15.2 Weakly correlated
74 ZNF736 4 43.0 Weakly correlated
75 ZIK1 3 87.0 Weakly correlated
76 ZKSCAN1 3 160.0 Weakly correlated
77 ZNF682 3 28.9 Weakly correlated
78 ZNF716 3 19.6 Weakly correlated
79 ZNF528 3 43.0 Weakly correlated
80 ZNF225 3 74.0 Highly correlated
81 ZNF671 3 94.0 Weakly correlated
82 ZNF486 3 8.6 Weakly correlated
83 ZNF589 3 28.9 Weakly correlated
84 ZNF283 3 99.0 Weakly correlated
85 ZNF789 3 99.0 Weakly correlated
86 ZKSCAN8 2 160.0 Weakly correlated
87 ZNF354C 2 99.0 Weakly correlated
88 ZNF530 2 28.9 Weakly correlated
89 ZNF816 2 28.9 Weakly correlated
90 ZNF160 2 74.0 Highly correlated
91 ZNF677 2 99.0 Weakly correlated
92 ZNF730 2 19.6 Weakly correlated
93 ZNF573 2 94.0 Weakly correlated
94 ZNF317 2 99.0 Weakly correlated
95 ZNF44 2 43.0 Weakly correlated
96 ZNF584 2 99.0 Weakly correlated
97 ZNF26 2 99.0 Weakly correlated
98 PRDM9 1 0.0 Weakly correlated
99 ZFP28 1 99.0 Weakly correlated
100 ZFP69 1 99.0 Weakly correlated
101 ZNF100 1 28.9 Weakly correlated
102 ZNF132 1 94.0 Weakly correlated
103 ZNF133 1 99.0 Weakly correlated
104 ZNF136 1 74.0 Highly correlated
105 ZKSCAN2 1 180.0 Weakly correlated
106 ZNF282 1 319.0 Weakly correlated
107 ZNF34 1 99.0 Weakly correlated
108 ZNF549 1 87.0 Weakly correlated
109 ZNF566 1 99.0 Weakly correlated
110 ZNF607 1 43.0 Weakly correlated
111 ZNF66 1 0.0 Weakly correlated
112 ZNF846 1 74.0 Highly correlated
113 ZNF302 1 43.0 Weakly correlated
114 ZNF582 1 99.0 Weakly correlated
115 ZNF605 1 99.0 Weakly correlated
116 ZNF878 1 43.0 Weakly correlated
117 ZNF274 1 99.0 Weakly correlated
118 ZNF551 1 94.0 Weakly correlated
119 ZNF224 1 69.0 Moderately correlated
120 ZNF304 1 99.0 Weakly correlated
121 ZNF320 1 28.9 Weakly correlated
122 ZNF613 1 99.0 Weakly correlated
123 ZNF684 1 99.0 Weakly correlated
124 ZNF778 1 74.0 Highly correlated
125 ZNF880 1 28.9 Weakly correlated
126 ZNF175 1 94.0 Weakly correlated
127 ZNF471 1 94.0 Weakly correlated
128 ZNF596 1 94.0 Weakly correlated
129 ZNF197 1 99.0 Weakly correlated
130 ZNF92 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZFP57 87.0 Weakly correlated
3 ZNF182 99.0 Weakly correlated
4 ZNF18 160.0 Weakly correlated
5 ZNF251 94.0 Weakly correlated
6 ZNF263 180.0 Weakly correlated
7 ZNF287 99.0 Weakly correlated
8 ZNF28 28.9 Weakly correlated
9 ZNF2 99.0 Weakly correlated
10 ZNF382 99.0 Weakly correlated
11 ZNF425 94.0 Weakly correlated
12 ZNF429 28.9 Weakly correlated
13 ZNF441 43.0 Weakly correlated
14 ZNF445 99.0 Weakly correlated
15 ZNF506 28.9 Weakly correlated
16 ZNF554 99.0 Weakly correlated
17 ZNF695 28.9 Weakly correlated
18 ZNF701 28.9 Weakly correlated
19 ZNF75D 94.0 Weakly correlated
20 ZNF792 94.0 Weakly correlated
21 ZNF84 99.0 Weakly correlated