ZRdb KZFP & Repeats
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SINE_ALUSQ4

  • Name
    ALUSQ4
  • Repbase
    AluSq4
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000046
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaaccggaaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcaacaagagcgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 55 99.0 Weakly correlated
2 ZNF394 50 99.0 Weakly correlated
3 ZNF284 42 43.0 Weakly correlated
4 ZNF441 32 43.0 Weakly correlated
5 ZNF2 30 99.0 Weakly correlated
6 ZFP69B 28 99.0 Weakly correlated
7 ZNF18 23 160.0 Weakly correlated
8 ZNF101 21 43.0 Weakly correlated
9 ZNF766 19 43.0 Weakly correlated
10 ZNF324 19 99.0 Weakly correlated
11 ZFP37 17 99.0 Weakly correlated
12 ZNF558 16 99.0 Weakly correlated
13 ZNF610 15 28.9 Weakly correlated
14 ZNF251 13 94.0 Weakly correlated
15 ZNF182 10 99.0 Weakly correlated
16 ZKSCAN1 8 160.0 Weakly correlated
17 ZNF257 8 0.0 Weakly correlated
18 ZNF547 8 74.0 Highly correlated
19 ZNF792 7 94.0 Weakly correlated
20 ZNF680 7 28.9 Weakly correlated
21 ZNF175 7 94.0 Weakly correlated
22 ZNF589 7 28.9 Weakly correlated
23 ZNF519 7 19.6 Weakly correlated
24 ZIM3 6 87.0 Weakly correlated
25 ZNF140 6 99.0 Weakly correlated
26 ZNF506 5 28.9 Weakly correlated
27 ZNF460 5 74.0 Highly correlated
28 ZNF264 5 99.0 Weakly correlated
29 ZNF679 5 28.9 Weakly correlated
30 ZNF202 5 160.0 Weakly correlated
31 ZFP57 5 87.0 Weakly correlated
32 ZNF641 4 99.0 Weakly correlated
33 ZNF263 4 180.0 Weakly correlated
34 ZNF534 4 19.6 Weakly correlated
35 ZNF695 4 28.9 Weakly correlated
36 ZNF479 4 6.4 Weakly correlated
37 ZNF705B 3 28.9 Weakly correlated
38 ZNF723 3 15.2 Weakly correlated
39 ZNF75D 3 94.0 Weakly correlated
40 ZNF486 3 8.6 Weakly correlated
41 ZNF92 3 28.9 Weakly correlated
42 ZNF197 3 99.0 Weakly correlated
43 ZNF320 3 28.9 Weakly correlated
44 ZNF317 3 99.0 Weakly correlated
45 ZNF585A 2 99.0 Weakly correlated
46 ZNF136 2 74.0 Highly correlated
47 ZNF705D 2 28.9 Weakly correlated
48 ZNF273 2 28.9 Weakly correlated
49 ZKSCAN8 2 160.0 Weakly correlated
50 ZNF429 2 28.9 Weakly correlated
51 ZNF793 2 99.0 Weakly correlated
52 ZNF786 2 99.0 Weakly correlated
53 ZNF597 2 94.0 Weakly correlated
54 ZNF554 2 99.0 Weakly correlated
55 ZNF133 1 99.0 Weakly correlated
56 ZNF730 1 19.6 Weakly correlated
57 ZNF701 1 28.9 Weakly correlated
58 ZNF707 1 74.0 Highly correlated
59 ZFP69 1 99.0 Weakly correlated
60 ZNF735 1 28.9 Weakly correlated
61 ZNF763 1 15.2 Weakly correlated
62 ZKSCAN5 1 160.0 Weakly correlated
63 ZKSCAN2 1 180.0 Weakly correlated
64 ZNF81 1 99.0 Weakly correlated
65 ZNF845 1 28.9 Weakly correlated
66 ZNF84 1 99.0 Weakly correlated
67 ZNF879 1 99.0 Weakly correlated
68 ZNF8 1 99.0 Weakly correlated
69 ZNF44 1 43.0 Weakly correlated
70 ZNF548 1 94.0 Weakly correlated
71 ZNF471 1 94.0 Weakly correlated
72 ZNF440 1 28.9 Weakly correlated
73 ZNF480 1 43.0 Weakly correlated
74 ZNF485 1 94.0 Weakly correlated
75 ZNF43 1 43.0 Weakly correlated
76 ZNF490 1 43.0 Weakly correlated
77 ZNF417 1 28.9 Weakly correlated
78 ZNF528 1 43.0 Weakly correlated
79 ZNF354C 1 99.0 Weakly correlated
80 ZNF141 1 43.0 Weakly correlated
81 ZNF560 1 43.0 Weakly correlated
82 ZNF563 1 28.9 Weakly correlated
83 ZNF573 1 94.0 Weakly correlated
84 ZNF28 1 28.9 Weakly correlated
85 ZNF274 1 99.0 Weakly correlated
86 ZNF616 1 43.0 Weakly correlated
87 ZNF649 1 28.9 Weakly correlated
88 ZNF230 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 37 43.0 Weakly correlated
2 ZNF441 23 43.0 Weakly correlated
3 ZNF101 11 43.0 Weakly correlated
4 ZNF382 10 99.0 Weakly correlated
5 ZNF182 8 99.0 Weakly correlated
6 ZNF519 7 19.6 Weakly correlated
7 ZNF610 7 28.9 Weakly correlated
8 ZNF140 6 99.0 Weakly correlated
9 ZNF257 6 0.0 Weakly correlated
10 ZNF394 6 99.0 Weakly correlated
11 ZNF792 5 94.0 Weakly correlated
12 ZNF460 5 74.0 Highly correlated
13 ZNF18 4 160.0 Weakly correlated
14 ZNF202 4 160.0 Weakly correlated
15 ZNF506 4 28.9 Weakly correlated
16 ZNF641 4 99.0 Weakly correlated
17 ZFP37 4 99.0 Weakly correlated
18 ZNF695 3 28.9 Weakly correlated
19 ZNF264 3 99.0 Weakly correlated
20 ZNF534 2 19.6 Weakly correlated
21 ZNF429 2 28.9 Weakly correlated
22 ZNF766 2 43.0 Weakly correlated
23 ZNF585A 2 99.0 Weakly correlated
24 ZNF616 1 43.0 Weakly correlated
25 ZNF680 1 28.9 Weakly correlated
26 ZNF560 1 43.0 Weakly correlated
27 ZNF485 1 94.0 Weakly correlated
28 ZNF786 1 99.0 Weakly correlated
29 ZNF705D 1 28.9 Weakly correlated
30 ZNF251 1 94.0 Weakly correlated
31 ZNF440 1 28.9 Weakly correlated
32 ZNF705B 1 28.9 Weakly correlated
33 ZNF44 1 43.0 Weakly correlated
34 ZNF417 1 28.9 Weakly correlated
35 ZIM3 1 87.0 Weakly correlated
36 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated
2 ZNF382 99.0 Weakly correlated