ZRdb KZFP & Repeats
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SINE_ALUSQ2

  • Name
    ALUSQ2
  • Repbase
    AluSq2
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000045
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggcgacaagagcgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 1672 99.0 Weakly correlated
2 ZNF382 1574 99.0 Weakly correlated
3 ZNF441 796 43.0 Weakly correlated
4 ZNF2 770 99.0 Weakly correlated
5 ZNF284 741 43.0 Weakly correlated
6 ZFP37 535 99.0 Weakly correlated
7 ZNF101 463 43.0 Weakly correlated
8 ZNF766 438 43.0 Weakly correlated
9 ZFP69B 425 99.0 Weakly correlated
10 ZNF18 419 160.0 Weakly correlated
11 ZNF680 397 28.9 Weakly correlated
12 ZNF324 377 99.0 Weakly correlated
13 ZNF251 372 94.0 Weakly correlated
14 ZNF519 360 19.6 Weakly correlated
15 ZNF558 348 99.0 Weakly correlated
16 ZNF705B 333 28.9 Weakly correlated
17 ZNF182 286 99.0 Weakly correlated
18 ZKSCAN1 272 160.0 Weakly correlated
19 ZNF610 263 28.9 Weakly correlated
20 ZNF257 260 0.0 Weakly correlated
21 ZNF534 241 19.6 Weakly correlated
22 ZIM3 230 87.0 Weakly correlated
23 ZNF792 228 94.0 Weakly correlated
24 ZNF140 224 99.0 Weakly correlated
25 ZNF506 181 28.9 Weakly correlated
26 ZNF589 177 28.9 Weakly correlated
27 ZNF263 167 180.0 Weakly correlated
28 ZNF705D 161 28.9 Weakly correlated
29 ZNF317 160 99.0 Weakly correlated
30 ZNF175 148 94.0 Weakly correlated
31 ZNF479 138 6.4 Weakly correlated
32 ZNF679 129 28.9 Weakly correlated
33 ZNF202 122 160.0 Weakly correlated
34 ZNF547 119 74.0 Highly correlated
35 ZFP57 112 87.0 Weakly correlated
36 ZKSCAN8 106 160.0 Weakly correlated
37 ZNF723 105 15.2 Weakly correlated
38 ZNF8 102 99.0 Weakly correlated
39 ZNF197 96 99.0 Weakly correlated
40 ZNF584 87 99.0 Weakly correlated
41 ZNF641 87 99.0 Weakly correlated
42 ZNF554 84 99.0 Weakly correlated
43 ZNF793 83 99.0 Weakly correlated
44 ZNF429 81 28.9 Weakly correlated
45 ZNF460 81 74.0 Highly correlated
46 ZNF92 80 28.9 Weakly correlated
47 ZNF486 69 8.6 Weakly correlated
48 ZNF707 69 74.0 Highly correlated
49 ZNF28 66 28.9 Weakly correlated
50 ZNF701 62 28.9 Weakly correlated
51 ZNF264 56 99.0 Weakly correlated
52 ZNF695 55 28.9 Weakly correlated
53 ZNF75D 53 94.0 Weakly correlated
54 ZNF585B 52 99.0 Weakly correlated
55 ZNF597 51 94.0 Weakly correlated
56 ZNF585A 50 99.0 Weakly correlated
57 ZNF334 49 99.0 Weakly correlated
58 ZNF490 49 43.0 Weakly correlated
59 ZNF485 46 94.0 Weakly correlated
60 ZNF84 41 99.0 Weakly correlated
61 ZNF287 39 99.0 Weakly correlated
62 ZNF528 39 43.0 Weakly correlated
63 ZNF786 38 99.0 Weakly correlated
64 ZNF274 36 99.0 Weakly correlated
65 ZNF133 35 99.0 Weakly correlated
66 ZNF320 33 28.9 Weakly correlated
67 ZFP28 32 99.0 Weakly correlated
68 ZNF248 30 99.0 Weakly correlated
69 ZNF425 28 94.0 Weakly correlated
70 ZNF682 27 28.9 Weakly correlated
71 ZNF160 26 74.0 Highly correlated
72 ZNF445 25 99.0 Weakly correlated
73 ZNF671 25 94.0 Weakly correlated
74 ZNF141 24 43.0 Weakly correlated
75 ZNF468 24 28.9 Weakly correlated
76 ZNF331 23 94.0 Weakly correlated
77 ZNF273 22 28.9 Weakly correlated
78 ZNF471 22 94.0 Weakly correlated
79 ZNF735 22 28.9 Weakly correlated
80 ZNF730 21 19.6 Weakly correlated
81 ZKSCAN5 20 160.0 Weakly correlated
82 ZNF136 20 74.0 Highly correlated
83 ZNF169 20 94.0 Weakly correlated
84 ZNF778 20 74.0 Highly correlated
85 ZNF436 19 180.0 Weakly correlated
86 ZNF780A 19 43.0 Weakly correlated
87 ZNF674 18 99.0 Weakly correlated
88 ZNF26 17 99.0 Weakly correlated
89 ZNF549 17 87.0 Weakly correlated
90 ZNF347 16 43.0 Weakly correlated
91 ZFP69 15 99.0 Weakly correlated
92 ZNF211 14 94.0 Weakly correlated
93 ZNF282 14 319.0 Weakly correlated
94 ZNF354C 14 99.0 Weakly correlated
95 ZNF677 14 99.0 Weakly correlated
96 ZNF823 14 43.0 Weakly correlated
97 ZNF189 13 99.0 Weakly correlated
98 ZNF135 11 94.0 Weakly correlated
99 ZNF222 11 43.0 Weakly correlated
100 ZNF81 11 99.0 Weakly correlated
101 ZNF100 10 28.9 Weakly correlated
102 ZNF44 10 43.0 Weakly correlated
103 ZNF627 10 74.0 Highly correlated
104 ZNF879 10 99.0 Weakly correlated
105 ZIK1 9 87.0 Weakly correlated
106 ZKSCAN2 9 180.0 Weakly correlated
107 ZNF43 9 43.0 Weakly correlated
108 ZNF816 9 28.9 Weakly correlated
109 ZNF10 8 99.0 Weakly correlated
110 ZNF230 8 28.9 Weakly correlated
111 ZNF337 8 43.0 Weakly correlated
112 ZNF33A 8 99.0 Weakly correlated
113 ZNF41 8 99.0 Weakly correlated
114 ZNF616 8 43.0 Weakly correlated
115 ZNF93 8 8.6 Weakly correlated
116 ZNF124 7 43.0 Weakly correlated
117 ZNF354A 7 99.0 Weakly correlated
118 ZNF560 7 43.0 Weakly correlated
119 ZNF563 7 28.9 Weakly correlated
120 ZNF765 7 8.6 Weakly correlated
121 ZNF85 7 28.9 Weakly correlated
122 ZNF480 6 43.0 Weakly correlated
123 ZNF605 6 99.0 Weakly correlated
124 ZNF808 6 19.6 Weakly correlated
125 ZNF440 5 28.9 Weakly correlated
126 ZNF557 5 15.2 Weakly correlated
127 ZNF573 5 94.0 Weakly correlated
128 ZNF675 5 8.6 Weakly correlated
129 ZNF736 5 43.0 Weakly correlated
130 ZNF789 5 99.0 Weakly correlated
131 ZNF91 5 6.0 Weakly correlated
132 ZFP30 4 99.0 Weakly correlated
133 ZNF225 4 74.0 Highly correlated
134 ZNF304 4 99.0 Weakly correlated
135 ZNF30 4 94.0 Weakly correlated
136 ZNF333 4 99.0 Weakly correlated
137 ZNF417 4 28.9 Weakly correlated
138 ZNF454 4 99.0 Weakly correlated
139 ZNF555 4 94.0 Weakly correlated
140 ZNF561 4 43.0 Weakly correlated
141 ZNF567 4 99.0 Weakly correlated
142 ZNF583 4 99.0 Weakly correlated
143 ZNF595 4 43.0 Weakly correlated
144 ZNF611 4 19.6 Weakly correlated
145 ZNF649 4 28.9 Weakly correlated
146 ZNF75A 4 94.0 Weakly correlated
147 ZNF763 4 15.2 Weakly correlated
148 ZNF777 4 319.0 Weakly correlated
149 ZNF845 4 28.9 Weakly correlated
150 ZFP14 3 99.0 Weakly correlated
151 ZNF157 3 99.0 Weakly correlated
152 ZNF17 3 69.0 Moderately correlated
153 ZNF224 3 69.0 Moderately correlated
154 ZNF254 3 43.0 Weakly correlated
155 ZNF302 3 43.0 Weakly correlated
156 ZNF350 3 99.0 Weakly correlated
157 ZNF383 3 99.0 Weakly correlated
158 ZNF543 3 99.0 Weakly correlated
159 ZNF564 3 74.0 Highly correlated
160 ZNF565 3 99.0 Weakly correlated
161 ZNF568 3 99.0 Weakly correlated
162 ZNF626 3 0.0 Weakly correlated
163 ZNF658 3 99.0 Weakly correlated
164 ZNF684 3 99.0 Weakly correlated
165 ZNF705E 3 0.0 Weakly correlated
166 ZNF716 3 19.6 Weakly correlated
167 ZNF749 3 28.9 Weakly correlated
168 ZNF761 3 19.6 Weakly correlated
169 ZNF791 3 87.0 Weakly correlated
170 ZNF799 3 43.0 Weakly correlated
171 ZNF878 3 43.0 Weakly correlated
172 ZFP82 2 99.0 Weakly correlated
173 ZNF12 2 99.0 Weakly correlated
174 ZNF267 2 43.0 Weakly correlated
175 ZNF283 2 99.0 Weakly correlated
176 ZNF343 2 74.0 Highly correlated
177 ZNF418 2 43.0 Weakly correlated
178 ZNF420 2 94.0 Weakly correlated
179 ZNF430 2 19.6 Weakly correlated
180 ZNF433 2 43.0 Weakly correlated
181 ZNF483 2 99.0 Weakly correlated
182 ZNF530 2 28.9 Weakly correlated
183 ZNF559 2 74.0 Highly correlated
184 ZNF569 2 99.0 Weakly correlated
185 ZNF571 2 99.0 Weakly correlated
186 ZNF607 2 43.0 Weakly correlated
187 ZNF613 2 99.0 Weakly correlated
188 ZNF700 2 28.9 Weakly correlated
189 ZNF727 2 19.6 Weakly correlated
190 ZNF776 2 43.0 Weakly correlated
191 ZNF77 2 87.0 Weakly correlated
192 ZNF846 2 74.0 Highly correlated
193 RBAK 1 99.0 Weakly correlated
194 ZFP90 1 99.0 Weakly correlated
195 ZIM2 1 0.0 Weakly correlated
196 ZKSCAN4 1 99.0 Weakly correlated
197 ZNF154 1 94.0 Weakly correlated
198 ZNF177 1 94.0 Weakly correlated
199 ZNF180 1 99.0 Weakly correlated
200 ZNF19 1 99.0 Weakly correlated
201 ZNF205 1 180.0 Weakly correlated
202 ZNF20 1 43.0 Weakly correlated
203 ZNF214 1 99.0 Weakly correlated
204 ZNF250 1 99.0 Weakly correlated
205 ZNF253 1 19.6 Weakly correlated
206 ZNF300 1 99.0 Weakly correlated
207 ZNF419 1 28.9 Weakly correlated
208 ZNF432 1 99.0 Weakly correlated
209 ZNF442 1 43.0 Weakly correlated
210 ZNF510 1 99.0 Weakly correlated
211 ZNF527 1 99.0 Weakly correlated
212 ZNF529 1 99.0 Weakly correlated
213 ZNF544 1 0.0 Weakly correlated
214 ZNF548 1 94.0 Weakly correlated
215 ZNF562 1 28.9 Weakly correlated
216 ZNF566 1 99.0 Weakly correlated
217 ZNF577 1 94.0 Weakly correlated
218 ZNF586 1 43.0 Weakly correlated
219 ZNF587 1 28.9 Weakly correlated
220 ZNF665 1 28.9 Weakly correlated
221 ZNF681 1 28.9 Weakly correlated
222 ZNF69 1 28.9 Weakly correlated
223 ZNF728 1 19.6 Weakly correlated
224 ZNF782 1 99.0 Weakly correlated
225 ZNF790 1 99.0 Weakly correlated
226 ZNF7 1 99.0 Weakly correlated
227 ZNF880 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 739 43.0 Weakly correlated
2 ZNF284 665 43.0 Weakly correlated
3 ZNF519 319 19.6 Weakly correlated
4 ZNF101 317 43.0 Weakly correlated
5 ZNF182 237 99.0 Weakly correlated
6 ZNF394 217 99.0 Weakly correlated
7 ZNF257 184 0.0 Weakly correlated
8 ZNF140 162 99.0 Weakly correlated
9 ZNF792 145 94.0 Weakly correlated
10 ZNF610 140 28.9 Weakly correlated
11 ZNF382 134 99.0 Weakly correlated
12 ZNF506 130 28.9 Weakly correlated
13 ZNF18 129 160.0 Weakly correlated
14 ZFP37 120 99.0 Weakly correlated
15 ZNF202 76 160.0 Weakly correlated
16 ZNF460 73 74.0 Highly correlated
17 ZNF534 65 19.6 Weakly correlated
18 ZNF429 59 28.9 Weakly correlated
19 ZNF641 52 99.0 Weakly correlated
20 ZNF705B 40 28.9 Weakly correlated
21 ZNF264 38 99.0 Weakly correlated
22 ZIM3 37 87.0 Weakly correlated
23 ZNF695 32 28.9 Weakly correlated
24 ZNF334 28 99.0 Weakly correlated
25 ZNF287 27 99.0 Weakly correlated
26 ZNF705D 25 28.9 Weakly correlated
27 ZNF786 23 99.0 Weakly correlated
28 ZNF479 21 6.4 Weakly correlated
29 ZNF445 20 99.0 Weakly correlated
30 ZNF680 20 28.9 Weakly correlated
31 ZNF707 16 74.0 Highly correlated
32 ZFP57 15 87.0 Weakly correlated
33 ZNF554 15 99.0 Weakly correlated
34 ZNF780A 12 43.0 Weakly correlated
35 ZNF324 10 99.0 Weakly correlated
36 ZNF251 10 94.0 Weakly correlated
37 ZNF558 10 99.0 Weakly correlated
38 ZNF263 10 180.0 Weakly correlated
39 ZNF485 9 94.0 Weakly correlated
40 ZNF425 9 94.0 Weakly correlated
41 ZKSCAN5 8 160.0 Weakly correlated
42 ZNF141 8 43.0 Weakly correlated
43 ZNF468 8 28.9 Weakly correlated
44 ZNF28 8 28.9 Weakly correlated
45 ZNF135 7 94.0 Weakly correlated
46 ZNF169 7 94.0 Weakly correlated
47 ZNF585A 7 99.0 Weakly correlated
48 ZNF766 7 43.0 Weakly correlated
49 ZNF75D 7 94.0 Weakly correlated
50 ZFP28 6 99.0 Weakly correlated
51 ZIK1 6 87.0 Weakly correlated
52 ZNF671 6 94.0 Weakly correlated
53 ZNF674 6 99.0 Weakly correlated
54 ZNF616 6 43.0 Weakly correlated
55 ZNF723 5 15.2 Weakly correlated
56 ZNF679 5 28.9 Weakly correlated
57 ZFP69B 4 99.0 Weakly correlated
58 ZNF823 4 43.0 Weakly correlated
59 ZNF417 4 28.9 Weakly correlated
60 ZNF793 4 99.0 Weakly correlated
61 ZNF160 4 74.0 Highly correlated
62 ZNF92 4 28.9 Weakly correlated
63 ZNF2 3 99.0 Weakly correlated
64 ZNF789 3 99.0 Weakly correlated
65 ZNF273 3 28.9 Weakly correlated
66 ZNF597 3 94.0 Weakly correlated
67 ZNF44 3 43.0 Weakly correlated
68 ZNF547 3 74.0 Highly correlated
69 ZNF222 3 43.0 Weakly correlated
70 ZNF317 3 99.0 Weakly correlated
71 ZNF730 3 19.6 Weakly correlated
72 ZNF682 3 28.9 Weakly correlated
73 ZKSCAN1 2 160.0 Weakly correlated
74 ZNF549 2 87.0 Weakly correlated
75 ZNF248 2 99.0 Weakly correlated
76 ZNF701 2 28.9 Weakly correlated
77 ZNF749 2 28.9 Weakly correlated
78 ZNF8 2 99.0 Weakly correlated
79 ZNF225 2 74.0 Highly correlated
80 ZNF589 2 28.9 Weakly correlated
81 ZNF84 2 99.0 Weakly correlated
82 ZNF677 2 99.0 Weakly correlated
83 ZNF175 2 94.0 Weakly correlated
84 ZNF347 2 43.0 Weakly correlated
85 ZNF343 2 74.0 Highly correlated
86 ZNF528 2 43.0 Weakly correlated
87 ZNF136 1 74.0 Highly correlated
88 ZNF543 1 99.0 Weakly correlated
89 ZNF566 1 99.0 Weakly correlated
90 ZNF684 1 99.0 Weakly correlated
91 ZNF736 1 43.0 Weakly correlated
92 ZNF189 1 99.0 Weakly correlated
93 ZNF337 1 43.0 Weakly correlated
94 ZNF567 1 99.0 Weakly correlated
95 ZNF560 1 43.0 Weakly correlated
96 ZNF440 1 28.9 Weakly correlated
97 ZNF530 1 28.9 Weakly correlated
98 ZNF557 1 15.2 Weakly correlated
99 ZNF585B 1 99.0 Weakly correlated
100 ZNF587 1 28.9 Weakly correlated
101 ZNF761 1 19.6 Weakly correlated
102 ZNF7 1 99.0 Weakly correlated
103 ZNF304 1 99.0 Weakly correlated
104 ZNF331 1 94.0 Weakly correlated
105 ZNF845 1 28.9 Weakly correlated
106 ZNF283 1 99.0 Weakly correlated
107 ZNF584 1 99.0 Weakly correlated
108 ZNF254 1 43.0 Weakly correlated
109 ZNF77 1 87.0 Weakly correlated
110 ZNF91 1 6.0 Weakly correlated
111 ZNF471 1 94.0 Weakly correlated
112 ZNF565 1 99.0 Weakly correlated
113 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Weakly correlated
2 ZFP37 99.0 Weakly correlated
3 ZNF182 99.0 Weakly correlated
4 ZNF18 160.0 Weakly correlated
5 ZNF251 94.0 Weakly correlated
6 ZNF257 0.0 Weakly correlated
7 ZNF287 99.0 Weakly correlated
8 ZNF382 99.0 Weakly correlated
9 ZNF425 94.0 Weakly correlated
10 ZNF445 99.0 Weakly correlated
11 ZNF506 28.9 Weakly correlated
12 ZNF554 99.0 Weakly correlated
13 ZNF695 28.9 Weakly correlated
14 ZNF75D 94.0 Weakly correlated
15 ZNF792 94.0 Weakly correlated