ZRdb KZFP & Repeats
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SINE_ALUSQ10

  • Name
    ALUSQ10
  • Repbase
    AluSq10
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000044
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccatcgcactccagcctgggggacaagagcgagacttcgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 59 99.0 Weakly correlated
2 ZNF394 54 99.0 Weakly correlated
3 ZFP37 30 99.0 Weakly correlated
4 ZNF2 30 99.0 Weakly correlated
5 ZNF324 25 99.0 Weakly correlated
6 ZNF18 22 160.0 Weakly correlated
7 ZNF766 22 43.0 Weakly correlated
8 ZNF534 20 19.6 Weakly correlated
9 ZNF680 19 28.9 Weakly correlated
10 ZFP69B 17 99.0 Weakly correlated
11 ZNF610 17 28.9 Weakly correlated
12 ZNF101 15 43.0 Weakly correlated
13 ZNF284 15 43.0 Weakly correlated
14 ZNF257 14 0.0 Weakly correlated
15 ZNF792 13 94.0 Weakly correlated
16 ZNF519 12 19.6 Weakly correlated
17 ZNF558 12 99.0 Weakly correlated
18 ZNF479 11 6.4 Weakly correlated
19 ZNF705B 11 28.9 Weakly correlated
20 ZNF263 10 180.0 Weakly correlated
21 ZIM3 8 87.0 Weakly correlated
22 ZNF251 8 94.0 Weakly correlated
23 ZKSCAN1 7 160.0 Weakly correlated
24 ZNF175 7 94.0 Weakly correlated
25 ZNF182 6 99.0 Weakly correlated
26 ZNF202 6 160.0 Weakly correlated
27 ZNF589 6 28.9 Weakly correlated
28 ZNF641 6 99.0 Weakly correlated
29 ZNF528 5 43.0 Weakly correlated
30 ZNF547 5 74.0 Highly correlated
31 ZNF705D 5 28.9 Weakly correlated
32 ZNF723 5 15.2 Weakly correlated
33 ZNF793 5 99.0 Weakly correlated
34 ZNF8 5 99.0 Weakly correlated
35 ZNF140 4 99.0 Weakly correlated
36 ZNF317 4 99.0 Weakly correlated
37 ZNF429 4 28.9 Weakly correlated
38 ZNF460 4 74.0 Highly correlated
39 ZNF486 4 8.6 Weakly correlated
40 ZNF554 4 99.0 Weakly correlated
41 ZNF560 4 43.0 Weakly correlated
42 ZNF679 4 28.9 Weakly correlated
43 ZNF695 4 28.9 Weakly correlated
44 ZNF707 4 74.0 Highly correlated
45 ZFP57 3 87.0 Weakly correlated
46 ZNF264 3 99.0 Weakly correlated
47 ZNF287 3 99.0 Weakly correlated
48 ZNF441 3 43.0 Weakly correlated
49 ZNF506 3 28.9 Weakly correlated
50 ZNF605 3 99.0 Weakly correlated
51 ZNF677 3 99.0 Weakly correlated
52 ZNF682 3 28.9 Weakly correlated
53 ZNF701 3 28.9 Weakly correlated
54 ZNF92 3 28.9 Weakly correlated
55 ZFP28 2 99.0 Weakly correlated
56 ZKSCAN8 2 160.0 Weakly correlated
57 ZNF133 2 99.0 Weakly correlated
58 ZNF141 2 43.0 Weakly correlated
59 ZNF197 2 99.0 Weakly correlated
60 ZNF302 2 43.0 Weakly correlated
61 ZNF331 2 94.0 Weakly correlated
62 ZNF445 2 99.0 Weakly correlated
63 ZNF549 2 87.0 Weakly correlated
64 ZNF567 2 99.0 Weakly correlated
65 ZNF584 2 99.0 Weakly correlated
66 ZNF585A 2 99.0 Weakly correlated
67 ZNF735 2 28.9 Weakly correlated
68 ZNF736 2 43.0 Weakly correlated
69 ZNF749 2 28.9 Weakly correlated
70 ZNF84 2 99.0 Weakly correlated
71 PRDM9 1 0.0 Weakly correlated
72 ZIK1 1 87.0 Weakly correlated
73 ZKSCAN2 1 180.0 Weakly correlated
74 ZKSCAN5 1 160.0 Weakly correlated
75 ZNF100 1 28.9 Weakly correlated
76 ZNF124 1 43.0 Weakly correlated
77 ZNF135 1 94.0 Weakly correlated
78 ZNF154 1 94.0 Weakly correlated
79 ZNF230 1 28.9 Weakly correlated
80 ZNF248 1 99.0 Weakly correlated
81 ZNF254 1 43.0 Weakly correlated
82 ZNF26 1 99.0 Weakly correlated
83 ZNF274 1 99.0 Weakly correlated
84 ZNF283 1 99.0 Weakly correlated
85 ZNF28 1 28.9 Weakly correlated
86 ZNF334 1 99.0 Weakly correlated
87 ZNF337 1 43.0 Weakly correlated
88 ZNF33A 1 99.0 Weakly correlated
89 ZNF33B 1 99.0 Weakly correlated
90 ZNF419 1 28.9 Weakly correlated
91 ZNF425 1 94.0 Weakly correlated
92 ZNF436 1 180.0 Weakly correlated
93 ZNF487 1 28.9 Weakly correlated
94 ZNF490 1 43.0 Weakly correlated
95 ZNF530 1 28.9 Weakly correlated
96 ZNF550 1 94.0 Weakly correlated
97 ZNF573 1 94.0 Weakly correlated
98 ZNF585B 1 99.0 Weakly correlated
99 ZNF611 1 19.6 Weakly correlated
100 ZNF613 1 99.0 Weakly correlated
101 ZNF649 1 28.9 Weakly correlated
102 ZNF671 1 94.0 Weakly correlated
103 ZNF674 1 99.0 Weakly correlated
104 ZNF700 1 28.9 Weakly correlated
105 ZNF730 1 19.6 Weakly correlated
106 ZNF75A 1 94.0 Weakly correlated
107 ZNF776 1 43.0 Weakly correlated
108 ZNF780A 1 43.0 Weakly correlated
109 ZNF786 1 99.0 Weakly correlated
110 ZNF7 1 99.0 Weakly correlated
111 ZNF878 1 43.0 Weakly correlated
112 ZNF879 1 99.0 Weakly correlated
113 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 12 43.0 Weakly correlated
2 ZNF519 12 19.6 Weakly correlated
3 ZNF534 9 19.6 Weakly correlated
4 ZNF257 9 0.0 Weakly correlated
5 ZNF610 8 28.9 Weakly correlated
6 ZNF792 8 94.0 Weakly correlated
7 ZFP37 6 99.0 Weakly correlated
8 ZNF182 6 99.0 Weakly correlated
9 ZNF18 6 160.0 Weakly correlated
10 ZNF382 6 99.0 Weakly correlated
11 ZNF101 4 43.0 Weakly correlated
12 ZNF202 4 160.0 Weakly correlated
13 ZNF460 4 74.0 Highly correlated
14 ZNF429 3 28.9 Weakly correlated
15 ZNF140 3 99.0 Weakly correlated
16 ZNF264 2 99.0 Weakly correlated
17 ZNF695 2 28.9 Weakly correlated
18 ZNF479 2 6.4 Weakly correlated
19 ZNF506 2 28.9 Weakly correlated
20 ZNF641 2 99.0 Weakly correlated
21 ZNF445 2 99.0 Weakly correlated
22 ZNF394 2 99.0 Weakly correlated
23 ZNF287 2 99.0 Weakly correlated
24 ZNF334 1 99.0 Weakly correlated
25 ZNF680 1 28.9 Weakly correlated
26 ZNF324 1 99.0 Weakly correlated
27 ZNF554 1 99.0 Weakly correlated
28 ZNF776 1 43.0 Weakly correlated
29 PRDM9 1 0.0 Weakly correlated
30 ZNF705D 1 28.9 Weakly correlated
31 ZNF780A 1 43.0 Weakly correlated
32 ZNF736 1 43.0 Weakly correlated
33 ZNF707 1 74.0 Highly correlated
34 ZFP28 1 99.0 Weakly correlated
35 ZNF730 1 19.6 Weakly correlated
36 ZNF705B 1 28.9 Weakly correlated
37 ZNF560 1 43.0 Weakly correlated
38 ZNF528 1 43.0 Weakly correlated
39 ZNF674 1 99.0 Weakly correlated
40 ZNF425 1 94.0 Weakly correlated
41 ZNF331 1 94.0 Weakly correlated
42 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF382 99.0 Weakly correlated
5 ZNF792 94.0 Weakly correlated