ZRdb KZFP & Repeats
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SINE_ALUSQ

  • Name
    ALUSQ
  • Repbase
    AluSq
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000043
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcaacaagagcgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 534 99.0 Weakly correlated
2 ZNF382 526 99.0 Weakly correlated
3 ZNF284 325 43.0 Weakly correlated
4 ZNF2 280 99.0 Weakly correlated
5 ZFP37 218 99.0 Weakly correlated
6 ZNF18 159 160.0 Weakly correlated
7 ZNF766 154 43.0 Weakly correlated
8 ZFP69B 151 99.0 Weakly correlated
9 ZNF101 138 43.0 Weakly correlated
10 ZNF558 129 99.0 Weakly correlated
11 ZNF324 128 99.0 Weakly correlated
12 ZNF680 119 28.9 Weakly correlated
13 ZNF610 117 28.9 Weakly correlated
14 ZNF705B 111 28.9 Weakly correlated
15 ZNF257 108 0.0 Weakly correlated
16 ZNF519 99 19.6 Weakly correlated
17 ZNF182 94 99.0 Weakly correlated
18 ZNF589 89 28.9 Weakly correlated
19 ZIM3 82 87.0 Weakly correlated
20 ZNF534 80 19.6 Weakly correlated
21 ZNF175 76 94.0 Weakly correlated
22 ZNF140 74 99.0 Weakly correlated
23 ZKSCAN1 71 160.0 Weakly correlated
24 ZNF792 69 94.0 Weakly correlated
25 ZNF251 68 94.0 Weakly correlated
26 ZNF705D 62 28.9 Weakly correlated
27 ZNF441 60 43.0 Weakly correlated
28 ZNF263 59 180.0 Weakly correlated
29 ZNF506 54 28.9 Weakly correlated
30 ZNF479 50 6.4 Weakly correlated
31 ZNF679 48 28.9 Weakly correlated
32 ZNF317 45 99.0 Weakly correlated
33 ZNF584 45 99.0 Weakly correlated
34 ZKSCAN8 42 160.0 Weakly correlated
35 ZNF547 42 74.0 Highly correlated
36 ZNF197 40 99.0 Weakly correlated
37 ZNF695 39 28.9 Weakly correlated
38 ZNF8 38 99.0 Weakly correlated
39 ZNF641 37 99.0 Weakly correlated
40 ZNF264 35 99.0 Weakly correlated
41 ZFP57 34 87.0 Weakly correlated
42 ZNF429 33 28.9 Weakly correlated
43 ZNF460 33 74.0 Highly correlated
44 ZNF92 33 28.9 Weakly correlated
45 ZNF793 31 99.0 Weakly correlated
46 ZNF554 30 99.0 Weakly correlated
47 ZNF723 28 15.2 Weakly correlated
48 ZNF707 24 74.0 Highly correlated
49 ZNF202 23 160.0 Weakly correlated
50 ZNF334 23 99.0 Weakly correlated
51 ZNF28 22 28.9 Weakly correlated
52 ZNF585A 21 99.0 Weakly correlated
53 ZNF701 21 28.9 Weakly correlated
54 ZNF585B 19 99.0 Weakly correlated
55 ZNF597 19 94.0 Weakly correlated
56 ZNF75D 19 94.0 Weakly correlated
57 ZNF287 17 99.0 Weakly correlated
58 ZNF490 17 43.0 Weakly correlated
59 ZNF786 17 99.0 Weakly correlated
60 ZNF84 17 99.0 Weakly correlated
61 ZNF320 14 28.9 Weakly correlated
62 ZNF486 14 8.6 Weakly correlated
63 ZNF528 14 43.0 Weakly correlated
64 ZNF274 13 99.0 Weakly correlated
65 ZNF133 11 99.0 Weakly correlated
66 ZNF160 11 74.0 Highly correlated
67 ZNF485 11 94.0 Weakly correlated
68 ZNF136 10 74.0 Highly correlated
69 ZNF674 10 99.0 Weakly correlated
70 ZNF778 10 74.0 Highly correlated
71 ZNF100 9 28.9 Weakly correlated
72 ZNF189 9 99.0 Weakly correlated
73 ZKSCAN5 8 160.0 Weakly correlated
74 ZNF445 8 99.0 Weakly correlated
75 ZFP28 7 99.0 Weakly correlated
76 ZNF135 7 94.0 Weakly correlated
77 ZNF248 7 99.0 Weakly correlated
78 ZNF273 7 28.9 Weakly correlated
79 ZNF682 7 28.9 Weakly correlated
80 ZNF141 6 43.0 Weakly correlated
81 ZNF169 6 94.0 Weakly correlated
82 ZNF425 6 94.0 Weakly correlated
83 ZNF436 6 180.0 Weakly correlated
84 ZNF471 6 94.0 Weakly correlated
85 ZNF549 6 87.0 Weakly correlated
86 ZNF627 6 74.0 Highly correlated
87 ZNF671 6 94.0 Weakly correlated
88 ZNF677 6 99.0 Weakly correlated
89 ZNF10 5 99.0 Weakly correlated
90 ZNF354C 5 99.0 Weakly correlated
91 ZNF605 5 99.0 Weakly correlated
92 ZNF780A 5 43.0 Weakly correlated
93 ZKSCAN2 4 180.0 Weakly correlated
94 ZNF211 4 94.0 Weakly correlated
95 ZNF337 4 43.0 Weakly correlated
96 ZNF347 4 43.0 Weakly correlated
97 ZNF350 4 99.0 Weakly correlated
98 ZNF611 4 19.6 Weakly correlated
99 ZNF716 4 19.6 Weakly correlated
100 ZNF878 4 43.0 Weakly correlated
101 ZFP30 3 99.0 Weakly correlated
102 ZNF17 3 69.0 Moderately correlated
103 ZNF222 3 43.0 Weakly correlated
104 ZNF26 3 99.0 Weakly correlated
105 ZNF331 3 94.0 Weakly correlated
106 ZNF343 3 74.0 Highly correlated
107 ZNF480 3 43.0 Weakly correlated
108 ZNF483 3 99.0 Weakly correlated
109 ZNF563 3 28.9 Weakly correlated
110 ZNF564 3 74.0 Highly correlated
111 ZNF583 3 99.0 Weakly correlated
112 ZNF730 3 19.6 Weakly correlated
113 ZNF735 3 28.9 Weakly correlated
114 ZNF777 3 319.0 Weakly correlated
115 ZNF81 3 99.0 Weakly correlated
116 ZNF823 3 43.0 Weakly correlated
117 ZNF845 3 28.9 Weakly correlated
118 ZNF879 3 99.0 Weakly correlated
119 ZNF93 3 8.6 Weakly correlated
120 ZNF12 2 99.0 Weakly correlated
121 ZNF157 2 99.0 Weakly correlated
122 ZNF230 2 28.9 Weakly correlated
123 ZNF253 2 19.6 Weakly correlated
124 ZNF267 2 43.0 Weakly correlated
125 ZNF33A 2 99.0 Weakly correlated
126 ZNF420 2 94.0 Weakly correlated
127 ZNF468 2 28.9 Weakly correlated
128 ZNF530 2 28.9 Weakly correlated
129 ZNF543 2 99.0 Weakly correlated
130 ZNF555 2 94.0 Weakly correlated
131 ZNF578 2 15.2 Weakly correlated
132 ZNF57 2 28.9 Weakly correlated
133 ZNF649 2 28.9 Weakly correlated
134 ZNF658 2 99.0 Weakly correlated
135 ZNF736 2 43.0 Weakly correlated
136 ZNF77 2 87.0 Weakly correlated
137 ZNF789 2 99.0 Weakly correlated
138 ZNF850 2 28.9 Weakly correlated
139 ZNF91 2 6.0 Weakly correlated
140 ZFP14 1 99.0 Weakly correlated
141 ZFP69 1 99.0 Weakly correlated
142 ZFP82 1 99.0 Weakly correlated
143 ZKSCAN4 1 99.0 Weakly correlated
144 ZNF124 1 43.0 Weakly correlated
145 ZNF20 1 43.0 Weakly correlated
146 ZNF213 1 180.0 Weakly correlated
147 ZNF215 1 99.0 Weakly correlated
148 ZNF224 1 69.0 Moderately correlated
149 ZNF234 1 99.0 Weakly correlated
150 ZNF256 1 74.0 Highly correlated
151 ZNF282 1 319.0 Weakly correlated
152 ZNF286A 1 160.0 Weakly correlated
153 ZNF302 1 43.0 Weakly correlated
154 ZNF304 1 99.0 Weakly correlated
155 ZNF333 1 99.0 Weakly correlated
156 ZNF354A 1 99.0 Weakly correlated
157 ZNF383 1 99.0 Weakly correlated
158 ZNF416 1 43.0 Weakly correlated
159 ZNF417 1 28.9 Weakly correlated
160 ZNF41 1 99.0 Weakly correlated
161 ZNF430 1 19.6 Weakly correlated
162 ZNF432 1 99.0 Weakly correlated
163 ZNF43 1 43.0 Weakly correlated
164 ZNF44 1 43.0 Weakly correlated
165 ZNF45 1 99.0 Weakly correlated
166 ZNF484 1 99.0 Weakly correlated
167 ZNF487 1 28.9 Weakly correlated
168 ZNF496 1 99.0 Weakly correlated
169 ZNF544 1 0.0 Weakly correlated
170 ZNF557 1 15.2 Weakly correlated
171 ZNF559 1 74.0 Highly correlated
172 ZNF560 1 43.0 Weakly correlated
173 ZNF562 1 28.9 Weakly correlated
174 ZNF565 1 99.0 Weakly correlated
175 ZNF566 1 99.0 Weakly correlated
176 ZNF568 1 99.0 Weakly correlated
177 ZNF570 1 99.0 Weakly correlated
178 ZNF573 1 94.0 Weakly correlated
179 ZNF587 1 28.9 Weakly correlated
180 ZNF607 1 43.0 Weakly correlated
181 ZNF616 1 43.0 Weakly correlated
182 ZNF700 1 28.9 Weakly correlated
183 ZNF705E 1 0.0 Weakly correlated
184 ZNF726 1 28.9 Weakly correlated
185 ZNF727 1 19.6 Weakly correlated
186 ZNF729 1 8.6 Weakly correlated
187 ZNF746 1 99.0 Weakly correlated
188 ZNF75A 1 94.0 Weakly correlated
189 ZNF761 1 19.6 Weakly correlated
190 ZNF780B 1 74.0 Highly correlated
191 ZNF799 1 43.0 Weakly correlated
192 ZNF808 1 19.6 Weakly correlated
193 ZNF813 1 28.9 Weakly correlated
194 ZNF816 1 28.9 Weakly correlated
195 ZNF85 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 296 43.0 Weakly correlated
2 ZNF519 90 19.6 Weakly correlated
3 ZNF101 90 43.0 Weakly correlated
4 ZNF257 78 0.0 Weakly correlated
5 ZNF182 76 99.0 Weakly correlated
6 ZNF394 59 99.0 Weakly correlated
7 ZNF140 58 99.0 Weakly correlated
8 ZNF610 50 28.9 Weakly correlated
9 ZNF18 46 160.0 Weakly correlated
10 ZNF792 41 94.0 Weakly correlated
11 ZNF506 38 28.9 Weakly correlated
12 ZFP37 36 99.0 Weakly correlated
13 ZNF441 36 43.0 Weakly correlated
14 ZNF534 35 19.6 Weakly correlated
15 ZNF429 31 28.9 Weakly correlated
16 ZNF460 31 74.0 Highly correlated
17 ZNF695 28 28.9 Weakly correlated
18 ZNF382 27 99.0 Weakly correlated
19 ZNF264 23 99.0 Weakly correlated
20 ZNF641 21 99.0 Weakly correlated
21 ZNF202 18 160.0 Weakly correlated
22 ZNF334 17 99.0 Weakly correlated
23 ZNF786 13 99.0 Weakly correlated
24 ZIM3 12 87.0 Weakly correlated
25 ZNF705D 12 28.9 Weakly correlated
26 ZNF287 11 99.0 Weakly correlated
27 ZNF680 11 28.9 Weakly correlated
28 ZNF705B 10 28.9 Weakly correlated
29 ZNF585A 8 99.0 Weakly correlated
30 ZNF558 7 99.0 Weakly correlated
31 ZNF445 6 99.0 Weakly correlated
32 ZNF75D 6 94.0 Weakly correlated
33 ZNF479 6 6.4 Weakly correlated
34 ZNF707 6 74.0 Highly correlated
35 ZNF554 5 99.0 Weakly correlated
36 ZNF425 4 94.0 Weakly correlated
37 ZKSCAN5 4 160.0 Weakly correlated
38 ZNF674 4 99.0 Weakly correlated
39 ZNF135 4 94.0 Weakly correlated
40 ZNF169 4 94.0 Weakly correlated
41 ZFP57 4 87.0 Weakly correlated
42 ZNF485 4 94.0 Weakly correlated
43 ZNF547 3 74.0 Highly correlated
44 ZNF251 3 94.0 Weakly correlated
45 ZNF2 3 99.0 Weakly correlated
46 ZNF84 3 99.0 Weakly correlated
47 ZNF716 2 19.6 Weakly correlated
48 ZNF793 2 99.0 Weakly correlated
49 ZNF766 2 43.0 Weakly correlated
50 ZNF8 2 99.0 Weakly correlated
51 ZKSCAN8 2 160.0 Weakly correlated
52 ZNF136 2 74.0 Highly correlated
53 ZNF679 2 28.9 Weakly correlated
54 ZNF736 2 43.0 Weakly correlated
55 ZNF347 2 43.0 Weakly correlated
56 ZNF263 2 180.0 Weakly correlated
57 ZNF682 2 28.9 Weakly correlated
58 ZNF20 1 43.0 Weakly correlated
59 ZNF222 1 43.0 Weakly correlated
60 ZNF234 1 99.0 Weakly correlated
61 ZNF213 1 180.0 Weakly correlated
62 ZNF175 1 94.0 Weakly correlated
63 ZNF726 1 28.9 Weakly correlated
64 ZNF616 1 43.0 Weakly correlated
65 ZNF816 1 28.9 Weakly correlated
66 ZNF141 1 43.0 Weakly correlated
67 ZNF416 1 43.0 Weakly correlated
68 ZNF417 1 28.9 Weakly correlated
69 ZNF487 1 28.9 Weakly correlated
70 ZNF490 1 43.0 Weakly correlated
71 ZFP69B 1 99.0 Weakly correlated
72 ZFP28 1 99.0 Weakly correlated
73 ZNF267 1 43.0 Weakly correlated
74 ZNF324 1 99.0 Weakly correlated
75 ZNF780A 1 43.0 Weakly correlated
76 ZNF761 1 19.6 Weakly correlated
77 ZNF597 1 94.0 Weakly correlated
78 ZNF729 1 8.6 Weakly correlated
79 ZNF253 1 19.6 Weakly correlated
80 ZNF789 1 99.0 Weakly correlated
81 ZKSCAN4 1 99.0 Weakly correlated
82 ZNF823 1 43.0 Weakly correlated
83 ZNF746 1 99.0 Weakly correlated
84 ZNF28 1 28.9 Weakly correlated
85 ZNF530 1 28.9 Weakly correlated
86 ZNF671 1 94.0 Weakly correlated
87 ZNF587 1 28.9 Weakly correlated
88 ZNF583 1 99.0 Weakly correlated
89 ZNF568 1 99.0 Weakly correlated
90 ZNF544 1 0.0 Weakly correlated
91 ZNF273 1 28.9 Weakly correlated
92 ZNF160 1 74.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF287 99.0 Weakly correlated
5 ZNF382 99.0 Weakly correlated
6 ZNF429 28.9 Weakly correlated
7 ZNF445 99.0 Weakly correlated
8 ZNF506 28.9 Weakly correlated
9 ZNF680 28.9 Weakly correlated
10 ZNF695 28.9 Weakly correlated
11 ZNF707 74.0 Highly correlated
12 ZNF75D 94.0 Weakly correlated
13 ZNF792 94.0 Weakly correlated