ZRdb KZFP & Repeats
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SINE_ALUSP

  • Name
    ALUSP
  • Repbase
    AluSp
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000042
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaanttagccgggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcggtgagccgagatcgcgccattgcactccagcctgggcaacaagagcgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 1426 99.0 Weakly correlated
2 ZNF382 1238 99.0 Weakly correlated
3 ZNF2 698 99.0 Weakly correlated
4 ZNF284 658 43.0 Weakly correlated
5 ZFP37 472 99.0 Weakly correlated
6 ZNF101 436 43.0 Weakly correlated
7 ZNF680 385 28.9 Weakly correlated
8 ZFP69B 384 99.0 Weakly correlated
9 ZNF18 378 160.0 Weakly correlated
10 ZNF766 355 43.0 Weakly correlated
11 ZNF324 354 99.0 Weakly correlated
12 ZNF558 354 99.0 Weakly correlated
13 ZNF519 331 19.6 Weakly correlated
14 ZNF441 293 43.0 Weakly correlated
15 ZNF182 252 99.0 Weakly correlated
16 ZNF610 251 28.9 Weakly correlated
17 ZNF705B 247 28.9 Weakly correlated
18 ZKSCAN1 196 160.0 Weakly correlated
19 ZNF257 192 0.0 Weakly correlated
20 ZNF792 188 94.0 Weakly correlated
21 ZNF251 185 94.0 Weakly correlated
22 ZNF140 181 99.0 Weakly correlated
23 ZNF534 181 19.6 Weakly correlated
24 ZIM3 180 87.0 Weakly correlated
25 ZNF263 156 180.0 Weakly correlated
26 ZNF317 142 99.0 Weakly correlated
27 ZNF705D 141 28.9 Weakly correlated
28 ZFP57 137 87.0 Weakly correlated
29 ZNF506 131 28.9 Weakly correlated
30 ZNF479 120 6.4 Weakly correlated
31 ZNF589 119 28.9 Weakly correlated
32 ZNF679 113 28.9 Weakly correlated
33 ZNF175 104 94.0 Weakly correlated
34 ZNF202 99 160.0 Weakly correlated
35 ZNF547 91 74.0 Highly correlated
36 ZKSCAN8 89 160.0 Weakly correlated
37 ZNF486 84 8.6 Weakly correlated
38 ZNF641 82 99.0 Weakly correlated
39 ZNF8 77 99.0 Weakly correlated
40 ZNF264 74 99.0 Weakly correlated
41 ZNF723 73 15.2 Weakly correlated
42 ZNF585B 71 99.0 Weakly correlated
43 ZNF460 69 74.0 Highly correlated
44 ZNF695 69 28.9 Weakly correlated
45 ZNF584 65 99.0 Weakly correlated
46 ZNF197 64 99.0 Weakly correlated
47 ZNF92 61 28.9 Weakly correlated
48 ZNF429 60 28.9 Weakly correlated
49 ZNF597 60 94.0 Weakly correlated
50 ZNF707 60 74.0 Highly correlated
51 ZNF334 56 99.0 Weakly correlated
52 ZNF554 53 99.0 Weakly correlated
53 ZNF28 52 28.9 Weakly correlated
54 ZNF585A 48 99.0 Weakly correlated
55 ZNF793 47 99.0 Weakly correlated
56 ZNF75D 44 94.0 Weakly correlated
57 ZNF701 40 28.9 Weakly correlated
58 ZNF485 39 94.0 Weakly correlated
59 ZNF674 38 99.0 Weakly correlated
60 ZNF160 37 74.0 Highly correlated
61 ZNF287 37 99.0 Weakly correlated
62 ZNF528 37 43.0 Weakly correlated
63 ZNF490 34 43.0 Weakly correlated
64 ZNF133 32 99.0 Weakly correlated
65 ZNF445 31 99.0 Weakly correlated
66 ZNF786 30 99.0 Weakly correlated
67 ZNF84 28 99.0 Weakly correlated
68 ZFP28 27 99.0 Weakly correlated
69 ZNF274 27 99.0 Weakly correlated
70 ZNF136 24 74.0 Highly correlated
71 ZNF248 24 99.0 Weakly correlated
72 ZNF331 24 94.0 Weakly correlated
73 ZNF778 22 74.0 Highly correlated
74 ZNF468 21 28.9 Weakly correlated
75 ZNF425 20 94.0 Weakly correlated
76 ZNF560 18 43.0 Weakly correlated
77 ZNF878 18 43.0 Weakly correlated
78 ZNF879 18 99.0 Weakly correlated
79 ZNF471 17 94.0 Weakly correlated
80 ZNF671 17 94.0 Weakly correlated
81 ZNF169 16 94.0 Weakly correlated
82 ZNF189 15 99.0 Weakly correlated
83 ZNF273 15 28.9 Weakly correlated
84 ZFP69 14 99.0 Weakly correlated
85 ZKSCAN5 14 160.0 Weakly correlated
86 ZNF33A 14 99.0 Weakly correlated
87 ZNF682 14 28.9 Weakly correlated
88 ZNF735 14 28.9 Weakly correlated
89 ZKSCAN2 13 180.0 Weakly correlated
90 ZNF141 13 43.0 Weakly correlated
91 ZNF211 13 94.0 Weakly correlated
92 ZNF436 13 180.0 Weakly correlated
93 ZNF544 13 0.0 Weakly correlated
94 ZNF573 12 94.0 Weakly correlated
95 ZNF616 12 43.0 Weakly correlated
96 ZNF730 12 19.6 Weakly correlated
97 ZNF225 11 74.0 Highly correlated
98 ZNF440 11 28.9 Weakly correlated
99 ZNF583 11 99.0 Weakly correlated
100 ZNF605 11 99.0 Weakly correlated
101 ZNF135 10 94.0 Weakly correlated
102 ZNF222 10 43.0 Weakly correlated
103 ZNF347 10 43.0 Weakly correlated
104 ZNF354A 10 99.0 Weakly correlated
105 ZNF41 10 99.0 Weakly correlated
106 ZNF44 10 43.0 Weakly correlated
107 ZNF658 10 99.0 Weakly correlated
108 ZNF808 10 19.6 Weakly correlated
109 ZNF823 10 43.0 Weakly correlated
110 ZNF93 10 8.6 Weakly correlated
111 ZFP14 9 99.0 Weakly correlated
112 ZKSCAN4 9 99.0 Weakly correlated
113 ZNF100 9 28.9 Weakly correlated
114 ZNF337 9 43.0 Weakly correlated
115 ZNF780A 9 43.0 Weakly correlated
116 ZFP30 8 99.0 Weakly correlated
117 ZNF26 8 99.0 Weakly correlated
118 ZNF282 8 319.0 Weakly correlated
119 ZNF320 8 28.9 Weakly correlated
120 ZNF420 8 94.0 Weakly correlated
121 ZNF43 8 43.0 Weakly correlated
122 ZNF514 8 94.0 Weakly correlated
123 ZNF607 8 43.0 Weakly correlated
124 ZNF675 8 8.6 Weakly correlated
125 ZNF689 8 99.0 Weakly correlated
126 ZNF81 8 99.0 Weakly correlated
127 ZNF30 7 94.0 Weakly correlated
128 ZNF433 7 43.0 Weakly correlated
129 ZNF487 7 28.9 Weakly correlated
130 ZNF549 7 87.0 Weakly correlated
131 ZNF555 7 94.0 Weakly correlated
132 ZNF649 7 28.9 Weakly correlated
133 ZNF677 7 99.0 Weakly correlated
134 ZNF124 6 43.0 Weakly correlated
135 ZNF157 6 99.0 Weakly correlated
136 ZNF17 6 69.0 Moderately correlated
137 ZNF230 6 28.9 Weakly correlated
138 ZNF354C 6 99.0 Weakly correlated
139 ZNF567 6 99.0 Weakly correlated
140 ZNF716 6 19.6 Weakly correlated
141 ZNF747 6 43.0 Weakly correlated
142 ZNF75A 6 94.0 Weakly correlated
143 ZNF845 6 28.9 Weakly correlated
144 ZNF177 5 94.0 Weakly correlated
145 ZNF304 5 99.0 Weakly correlated
146 ZNF343 5 74.0 Highly correlated
147 ZNF454 5 99.0 Weakly correlated
148 ZNF510 5 99.0 Weakly correlated
149 ZNF530 5 28.9 Weakly correlated
150 ZNF180 4 99.0 Weakly correlated
151 ZNF205 4 180.0 Weakly correlated
152 ZNF20 4 43.0 Weakly correlated
153 ZNF234 4 99.0 Weakly correlated
154 ZNF417 4 28.9 Weakly correlated
155 ZNF586 4 43.0 Weakly correlated
156 ZNF611 4 19.6 Weakly correlated
157 ZNF627 4 74.0 Highly correlated
158 ZNF763 4 15.2 Weakly correlated
159 ZNF765 4 8.6 Weakly correlated
160 ZNF772 4 94.0 Weakly correlated
161 ZNF776 4 43.0 Weakly correlated
162 ZNF789 4 99.0 Weakly correlated
163 ZNF813 4 28.9 Weakly correlated
164 ZNF846 4 74.0 Highly correlated
165 ZNF85 4 28.9 Weakly correlated
166 ZNF224 3 69.0 Moderately correlated
167 ZNF302 3 43.0 Weakly correlated
168 ZNF333 3 99.0 Weakly correlated
169 ZNF350 3 99.0 Weakly correlated
170 ZNF418 3 43.0 Weakly correlated
171 ZNF430 3 19.6 Weakly correlated
172 ZNF461 3 99.0 Weakly correlated
173 ZNF500 3 160.0 Weakly correlated
174 ZNF570 3 99.0 Weakly correlated
175 ZNF571 3 99.0 Weakly correlated
176 ZNF626 3 0.0 Weakly correlated
177 ZNF667 3 99.0 Weakly correlated
178 ZNF66 3 0.0 Weakly correlated
179 ZNF705E 3 0.0 Weakly correlated
180 ZNF799 3 43.0 Weakly correlated
181 ZNF7 3 99.0 Weakly correlated
182 ZNF816 3 28.9 Weakly correlated
183 ZNF850 3 28.9 Weakly correlated
184 ZNF91 3 6.0 Weakly correlated
185 RBAK 2 99.0 Weakly correlated
186 ZIK1 2 87.0 Weakly correlated
187 ZNF10 2 99.0 Weakly correlated
188 ZNF215 2 99.0 Weakly correlated
189 ZNF253 2 19.6 Weakly correlated
190 ZNF256 2 74.0 Highly correlated
191 ZNF267 2 43.0 Weakly correlated
192 ZNF37A 2 99.0 Weakly correlated
193 ZNF383 2 99.0 Weakly correlated
194 ZNF416 2 43.0 Weakly correlated
195 ZNF431 2 28.9 Weakly correlated
196 ZNF432 2 99.0 Weakly correlated
197 ZNF480 2 43.0 Weakly correlated
198 ZNF484 2 99.0 Weakly correlated
199 ZNF527 2 99.0 Weakly correlated
200 ZNF548 2 94.0 Weakly correlated
201 ZNF556 2 94.0 Weakly correlated
202 ZNF557 2 15.2 Weakly correlated
203 ZNF559 2 74.0 Highly correlated
204 ZNF561 2 43.0 Weakly correlated
205 ZNF563 2 28.9 Weakly correlated
206 ZNF564 2 74.0 Highly correlated
207 ZNF568 2 99.0 Weakly correlated
208 ZNF578 2 15.2 Weakly correlated
209 ZNF582 2 99.0 Weakly correlated
210 ZNF596 2 94.0 Weakly correlated
211 ZNF613 2 99.0 Weakly correlated
212 ZNF684 2 99.0 Weakly correlated
213 ZNF699 2 99.0 Weakly correlated
214 ZNF700 2 28.9 Weakly correlated
215 ZNF709 2 87.0 Weakly correlated
216 ZNF749 2 28.9 Weakly correlated
217 ZNF74 2 99.0 Weakly correlated
218 ZNF777 2 319.0 Weakly correlated
219 ZNF77 2 87.0 Weakly correlated
220 ZNF791 2 87.0 Weakly correlated
221 ZNF814 2 0.0 Weakly correlated
222 ZNF114 1 28.9 Weakly correlated
223 ZNF12 1 99.0 Weakly correlated
224 ZNF154 1 94.0 Weakly correlated
225 ZNF195 1 28.9 Weakly correlated
226 ZNF212 1 160.0 Weakly correlated
227 ZNF214 1 99.0 Weakly correlated
228 ZNF221 1 74.0 Highly correlated
229 ZNF223 1 43.0 Weakly correlated
230 ZNF233 1 99.0 Weakly correlated
231 ZNF250 1 99.0 Weakly correlated
232 ZNF283 1 99.0 Weakly correlated
233 ZNF286A 1 160.0 Weakly correlated
234 ZNF300 1 99.0 Weakly correlated
235 ZNF426 1 87.0 Weakly correlated
236 ZNF439 1 8.6 Weakly correlated
237 ZNF442 1 43.0 Weakly correlated
238 ZNF443 1 19.6 Weakly correlated
239 ZNF446 1 94.0 Weakly correlated
240 ZNF483 1 99.0 Weakly correlated
241 ZNF525 1 19.6 Weakly correlated
242 ZNF529 1 99.0 Weakly correlated
243 ZNF565 1 99.0 Weakly correlated
244 ZNF566 1 99.0 Weakly correlated
245 ZNF569 1 99.0 Weakly correlated
246 ZNF577 1 94.0 Weakly correlated
247 ZNF57 1 28.9 Weakly correlated
248 ZNF587 1 28.9 Weakly correlated
249 ZNF595 1 43.0 Weakly correlated
250 ZNF615 1 99.0 Weakly correlated
251 ZNF630 1 94.0 Weakly correlated
252 ZNF669 1 43.0 Weakly correlated
253 ZNF681 1 28.9 Weakly correlated
254 ZNF717 1 0.0 Weakly correlated
255 ZNF718 1 19.6 Weakly correlated
256 ZNF726 1 28.9 Weakly correlated
257 ZNF728 1 19.6 Weakly correlated
258 ZNF736 1 43.0 Weakly correlated
259 ZNF836 1 43.0 Weakly correlated
260 ZNF860 1 0.0 Weakly correlated
261 ZNF880 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 578 43.0 Weakly correlated
2 ZNF519 304 19.6 Weakly correlated
3 ZNF101 286 43.0 Weakly correlated
4 ZNF441 227 43.0 Weakly correlated
5 ZNF394 206 99.0 Weakly correlated
6 ZNF182 205 99.0 Weakly correlated
7 ZNF140 148 99.0 Weakly correlated
8 ZNF610 132 28.9 Weakly correlated
9 ZNF18 119 160.0 Weakly correlated
10 ZNF257 118 0.0 Weakly correlated
11 ZNF792 107 94.0 Weakly correlated
12 ZFP37 104 99.0 Weakly correlated
13 ZNF506 102 28.9 Weakly correlated
14 ZNF202 72 160.0 Weakly correlated
15 ZNF460 63 74.0 Highly correlated
16 ZNF534 53 19.6 Weakly correlated
17 ZNF641 53 99.0 Weakly correlated
18 ZNF264 46 99.0 Weakly correlated
19 ZNF334 43 99.0 Weakly correlated
20 ZNF695 40 28.9 Weakly correlated
21 ZNF429 31 28.9 Weakly correlated
22 ZFP57 29 87.0 Weakly correlated
23 ZNF382 29 99.0 Weakly correlated
24 ZNF287 26 99.0 Weakly correlated
25 ZNF674 25 99.0 Weakly correlated
26 ZNF445 25 99.0 Weakly correlated
27 ZNF680 22 28.9 Weakly correlated
28 ZNF705D 22 28.9 Weakly correlated
29 ZNF705B 19 28.9 Weakly correlated
30 ZIM3 18 87.0 Weakly correlated
31 ZNF766 18 43.0 Weakly correlated
32 ZNF786 14 99.0 Weakly correlated
33 ZNF585A 14 99.0 Weakly correlated
34 ZNF707 12 74.0 Highly correlated
35 ZNF324 10 99.0 Weakly correlated
36 ZNF75D 9 94.0 Weakly correlated
37 ZNF225 8 74.0 Highly correlated
38 ZNF558 8 99.0 Weakly correlated
39 ZNF560 8 43.0 Weakly correlated
40 ZNF425 7 94.0 Weakly correlated
41 ZNF485 7 94.0 Weakly correlated
42 ZNF616 7 43.0 Weakly correlated
43 ZNF135 6 94.0 Weakly correlated
44 ZNF554 6 99.0 Weakly correlated
45 ZNF479 6 6.4 Weakly correlated
46 ZNF597 6 94.0 Weakly correlated
47 ZNF468 5 28.9 Weakly correlated
48 ZFP28 4 99.0 Weakly correlated
49 ZNF8 4 99.0 Weakly correlated
50 ZNF440 4 28.9 Weakly correlated
51 ZNF28 4 28.9 Weakly correlated
52 ZKSCAN1 3 160.0 Weakly correlated
53 ZKSCAN5 3 160.0 Weakly correlated
54 ZNF169 3 94.0 Weakly correlated
55 ZNF273 3 28.9 Weakly correlated
56 ZNF417 3 28.9 Weakly correlated
57 ZNF251 3 94.0 Weakly correlated
58 ZNF567 3 99.0 Weakly correlated
59 ZNF701 3 28.9 Weakly correlated
60 ZNF2 3 99.0 Weakly correlated
61 ZNF486 3 8.6 Weakly correlated
62 ZFP69B 2 99.0 Weakly correlated
63 ZIK1 2 87.0 Weakly correlated
64 ZNF141 2 43.0 Weakly correlated
65 ZNF92 2 28.9 Weakly correlated
66 ZNF234 2 99.0 Weakly correlated
67 ZNF585B 2 99.0 Weakly correlated
68 ZNF675 2 8.6 Weakly correlated
69 ZNF596 2 94.0 Weakly correlated
70 ZNF222 2 43.0 Weakly correlated
71 ZNF263 2 180.0 Weakly correlated
72 ZNF573 2 94.0 Weakly correlated
73 ZNF723 2 15.2 Weakly correlated
74 ZNF331 2 94.0 Weakly correlated
75 ZNF84 2 99.0 Weakly correlated
76 ZNF878 2 43.0 Weakly correlated
77 ZFP69 1 99.0 Weakly correlated
78 ZNF211 1 94.0 Weakly correlated
79 ZNF26 1 99.0 Weakly correlated
80 ZNF587 1 28.9 Weakly correlated
81 ZNF679 1 28.9 Weakly correlated
82 ZNF749 1 28.9 Weakly correlated
83 ZNF189 1 99.0 Weakly correlated
84 ZNF530 1 28.9 Weakly correlated
85 ZNF154 1 94.0 Weakly correlated
86 ZNF256 1 74.0 Highly correlated
87 ZNF626 1 0.0 Weakly correlated
88 ZNF780A 1 43.0 Weakly correlated
89 ZFP14 1 99.0 Weakly correlated
90 ZNF461 1 99.0 Weakly correlated
91 ZNF879 1 99.0 Weakly correlated
92 ZKSCAN2 1 180.0 Weakly correlated
93 ZNF471 1 94.0 Weakly correlated
94 ZNF730 1 19.6 Weakly correlated
95 ZNF836 1 43.0 Weakly correlated
96 ZNF93 1 8.6 Weakly correlated
97 ZNF160 1 74.0 Highly correlated
98 ZNF320 1 28.9 Weakly correlated
99 ZNF420 1 94.0 Weakly correlated
100 ZNF735 1 28.9 Weakly correlated
101 ZNF880 1 28.9 Weakly correlated
102 ZNF347 1 43.0 Weakly correlated
103 ZNF823 1 43.0 Weakly correlated
104 ZNF343 1 74.0 Highly correlated
105 ZNF671 1 94.0 Weakly correlated
106 ZNF772 1 94.0 Weakly correlated
107 ZNF776 1 43.0 Weakly correlated
108 ZNF793 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF257 0.0 Weakly correlated
5 ZNF287 99.0 Weakly correlated
6 ZNF382 99.0 Weakly correlated
7 ZNF445 99.0 Weakly correlated
8 ZNF506 28.9 Weakly correlated
9 ZNF695 28.9 Weakly correlated
10 ZNF792 94.0 Weakly correlated