ZRdb KZFP & Repeats
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SINE_ALUSG7

  • Name
    ALUSG7
  • Repbase
    AluSg7
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000041
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcagagaattgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 236 99.0 Weakly correlated
2 ZNF382 193 99.0 Weakly correlated
3 ZNF284 152 43.0 Weakly correlated
4 ZNF441 149 43.0 Weakly correlated
5 ZNF2 123 99.0 Weakly correlated
6 ZFP37 75 99.0 Weakly correlated
7 ZNF18 74 160.0 Weakly correlated
8 ZNF680 73 28.9 Weakly correlated
9 ZNF519 72 19.6 Weakly correlated
10 ZNF766 65 43.0 Weakly correlated
11 ZNF182 63 99.0 Weakly correlated
12 ZNF324 61 99.0 Weakly correlated
13 ZNF101 60 43.0 Weakly correlated
14 ZFP69B 59 99.0 Weakly correlated
15 ZNF558 58 99.0 Weakly correlated
16 ZNF610 54 28.9 Weakly correlated
17 ZNF705B 37 28.9 Weakly correlated
18 ZNF792 37 94.0 Weakly correlated
19 ZKSCAN1 33 160.0 Weakly correlated
20 ZNF263 28 180.0 Weakly correlated
21 ZNF460 28 74.0 Highly correlated
22 ZNF140 26 99.0 Weakly correlated
23 ZNF257 26 0.0 Weakly correlated
24 ZNF679 23 28.9 Weakly correlated
25 ZNF705D 22 28.9 Weakly correlated
26 ZNF479 20 6.4 Weakly correlated
27 ZIM3 19 87.0 Weakly correlated
28 ZNF506 19 28.9 Weakly correlated
29 ZNF589 19 28.9 Weakly correlated
30 ZFP57 18 87.0 Weakly correlated
31 ZNF585B 18 99.0 Weakly correlated
32 ZNF251 17 94.0 Weakly correlated
33 ZNF317 17 99.0 Weakly correlated
34 ZNF429 17 28.9 Weakly correlated
35 ZNF534 17 19.6 Weakly correlated
36 ZNF641 17 99.0 Weakly correlated
37 ZNF695 15 28.9 Weakly correlated
38 ZNF8 15 99.0 Weakly correlated
39 ZNF197 14 99.0 Weakly correlated
40 ZNF547 14 74.0 Highly correlated
41 ZNF175 13 94.0 Weakly correlated
42 ZNF597 13 94.0 Weakly correlated
43 ZNF264 12 99.0 Weakly correlated
44 ZNF723 12 15.2 Weakly correlated
45 ZNF202 11 160.0 Weakly correlated
46 ZNF287 11 99.0 Weakly correlated
47 ZNF28 11 28.9 Weakly correlated
48 ZNF486 11 8.6 Weakly correlated
49 ZNF554 11 99.0 Weakly correlated
50 ZNF707 11 74.0 Highly correlated
51 ZNF92 11 28.9 Weakly correlated
52 ZNF528 10 43.0 Weakly correlated
53 ZNF786 10 99.0 Weakly correlated
54 ZNF584 9 99.0 Weakly correlated
55 ZFP28 8 99.0 Weakly correlated
56 ZNF334 8 99.0 Weakly correlated
57 ZNF585A 8 99.0 Weakly correlated
58 ZNF793 8 99.0 Weakly correlated
59 ZNF248 7 99.0 Weakly correlated
60 ZNF75D 7 94.0 Weakly correlated
61 ZKSCAN8 6 160.0 Weakly correlated
62 ZNF701 6 28.9 Weakly correlated
63 ZNF735 6 28.9 Weakly correlated
64 ZKSCAN5 5 160.0 Weakly correlated
65 ZNF160 5 74.0 Highly correlated
66 ZNF675 5 8.6 Weakly correlated
67 ZNF778 5 74.0 Highly correlated
68 ZNF84 5 99.0 Weakly correlated
69 ZNF274 4 99.0 Weakly correlated
70 ZNF304 4 99.0 Weakly correlated
71 ZNF347 4 43.0 Weakly correlated
72 ZNF81 4 99.0 Weakly correlated
73 ZNF823 4 43.0 Weakly correlated
74 ZNF133 3 99.0 Weakly correlated
75 ZNF136 3 74.0 Highly correlated
76 ZNF141 3 43.0 Weakly correlated
77 ZNF189 3 99.0 Weakly correlated
78 ZNF222 3 43.0 Weakly correlated
79 ZNF30 3 94.0 Weakly correlated
80 ZNF320 3 28.9 Weakly correlated
81 ZNF354A 3 99.0 Weakly correlated
82 ZNF468 3 28.9 Weakly correlated
83 ZNF490 3 43.0 Weakly correlated
84 ZNF587 3 28.9 Weakly correlated
85 ZNF627 3 74.0 Highly correlated
86 ZNF682 3 28.9 Weakly correlated
87 ZNF91 3 6.0 Weakly correlated
88 ZFP69 2 99.0 Weakly correlated
89 ZKSCAN2 2 180.0 Weakly correlated
90 ZNF124 2 43.0 Weakly correlated
91 ZNF135 2 94.0 Weakly correlated
92 ZNF17 2 69.0 Moderately correlated
93 ZNF273 2 28.9 Weakly correlated
94 ZNF282 2 319.0 Weakly correlated
95 ZNF343 2 74.0 Highly correlated
96 ZNF354C 2 99.0 Weakly correlated
97 ZNF418 2 43.0 Weakly correlated
98 ZNF445 2 99.0 Weakly correlated
99 ZNF484 2 99.0 Weakly correlated
100 ZNF485 2 94.0 Weakly correlated
101 ZNF555 2 94.0 Weakly correlated
102 ZNF559 2 74.0 Highly correlated
103 ZNF563 2 28.9 Weakly correlated
104 ZNF586 2 43.0 Weakly correlated
105 ZNF613 2 99.0 Weakly correlated
106 ZNF700 2 28.9 Weakly correlated
107 ZNF730 2 19.6 Weakly correlated
108 ZNF808 2 19.6 Weakly correlated
109 ZNF93 2 8.6 Weakly correlated
110 ZFP1 1 99.0 Weakly correlated
111 ZIK1 1 87.0 Weakly correlated
112 ZNF100 1 28.9 Weakly correlated
113 ZNF10 1 99.0 Weakly correlated
114 ZNF157 1 99.0 Weakly correlated
115 ZNF230 1 28.9 Weakly correlated
116 ZNF250 1 99.0 Weakly correlated
117 ZNF254 1 43.0 Weakly correlated
118 ZNF267 1 43.0 Weakly correlated
119 ZNF302 1 43.0 Weakly correlated
120 ZNF324B 1 99.0 Weakly correlated
121 ZNF337 1 43.0 Weakly correlated
122 ZNF33B 1 99.0 Weakly correlated
123 ZNF383 1 99.0 Weakly correlated
124 ZNF433 1 43.0 Weakly correlated
125 ZNF436 1 180.0 Weakly correlated
126 ZNF440 1 28.9 Weakly correlated
127 ZNF471 1 94.0 Weakly correlated
128 ZNF480 1 43.0 Weakly correlated
129 ZNF483 1 99.0 Weakly correlated
130 ZNF500 1 160.0 Weakly correlated
131 ZNF510 1 99.0 Weakly correlated
132 ZNF514 1 94.0 Weakly correlated
133 ZNF527 1 99.0 Weakly correlated
134 ZNF530 1 28.9 Weakly correlated
135 ZNF548 1 94.0 Weakly correlated
136 ZNF549 1 87.0 Weakly correlated
137 ZNF561 1 43.0 Weakly correlated
138 ZNF571 1 99.0 Weakly correlated
139 ZNF573 1 94.0 Weakly correlated
140 ZNF582 1 99.0 Weakly correlated
141 ZNF583 1 99.0 Weakly correlated
142 ZNF605 1 99.0 Weakly correlated
143 ZNF611 1 19.6 Weakly correlated
144 ZNF614 1 99.0 Weakly correlated
145 ZNF616 1 43.0 Weakly correlated
146 ZNF620 1 99.0 Weakly correlated
147 ZNF671 1 94.0 Weakly correlated
148 ZNF677 1 99.0 Weakly correlated
149 ZNF726 1 28.9 Weakly correlated
150 ZNF763 1 15.2 Weakly correlated
151 ZNF764 1 160.0 Weakly correlated
152 ZNF765 1 8.6 Weakly correlated
153 ZNF77 1 87.0 Weakly correlated
154 ZNF780A 1 43.0 Weakly correlated
155 ZNF799 1 43.0 Weakly correlated
156 ZNF816 1 28.9 Weakly correlated
157 ZNF85 1 28.9 Weakly correlated
158 ZNF879 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 139 43.0 Weakly correlated
2 ZNF441 138 43.0 Weakly correlated
3 ZNF519 65 19.6 Weakly correlated
4 ZNF182 58 99.0 Weakly correlated
5 ZNF101 42 43.0 Weakly correlated
6 ZNF394 27 99.0 Weakly correlated
7 ZNF610 25 28.9 Weakly correlated
8 ZNF18 25 160.0 Weakly correlated
9 ZNF382 22 99.0 Weakly correlated
10 ZNF792 21 94.0 Weakly correlated
11 ZNF460 21 74.0 Highly correlated
12 ZNF140 18 99.0 Weakly correlated
13 ZNF324 15 99.0 Weakly correlated
14 ZNF641 13 99.0 Weakly correlated
15 ZNF429 13 28.9 Weakly correlated
16 ZNF257 13 0.0 Weakly correlated
17 ZFP37 13 99.0 Weakly correlated
18 ZNF506 11 28.9 Weakly correlated
19 ZNF695 10 28.9 Weakly correlated
20 ZNF202 8 160.0 Weakly correlated
21 ZNF786 8 99.0 Weakly correlated
22 ZNF334 7 99.0 Weakly correlated
23 ZNF264 7 99.0 Weakly correlated
24 ZNF287 7 99.0 Weakly correlated
25 ZNF534 6 19.6 Weakly correlated
26 ZNF680 4 28.9 Weakly correlated
27 ZNF347 3 43.0 Weakly correlated
28 ZFP57 3 87.0 Weakly correlated
29 ZNF823 3 43.0 Weakly correlated
30 ZNF597 2 94.0 Weakly correlated
31 ZNF445 2 99.0 Weakly correlated
32 ZNF587 2 28.9 Weakly correlated
33 ZNF705D 2 28.9 Weakly correlated
34 ZFP28 2 99.0 Weakly correlated
35 ZNF2 2 99.0 Weakly correlated
36 ZNF705B 2 28.9 Weakly correlated
37 ZNF554 2 99.0 Weakly correlated
38 ZNF141 2 43.0 Weakly correlated
39 ZKSCAN5 2 160.0 Weakly correlated
40 ZNF28 1 28.9 Weakly correlated
41 ZNF766 1 43.0 Weakly correlated
42 ZNF558 1 99.0 Weakly correlated
43 ZFP69B 1 99.0 Weakly correlated
44 ZNF480 1 43.0 Weakly correlated
45 ZNF707 1 74.0 Highly correlated
46 ZNF440 1 28.9 Weakly correlated
47 ZNF780A 1 43.0 Weakly correlated
48 ZNF81 1 99.0 Weakly correlated
49 ZNF679 1 28.9 Weakly correlated
50 ZNF616 1 43.0 Weakly correlated
51 ZNF485 1 94.0 Weakly correlated
52 ZNF735 1 28.9 Weakly correlated
53 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF287 99.0 Weakly correlated
5 ZNF382 99.0 Weakly correlated
6 ZNF429 28.9 Weakly correlated
7 ZNF506 28.9 Weakly correlated
8 ZNF695 28.9 Weakly correlated
9 ZNF792 94.0 Weakly correlated