ZRdb KZFP & Repeats
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SINE_ALUSG4

  • Name
    ALUSG4
  • Repbase
    AluSg4
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000040
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagttcgagaccagcctggccaagatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgcggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 227 99.0 Weakly correlated
2 ZNF382 171 99.0 Weakly correlated
3 ZNF441 124 43.0 Weakly correlated
4 ZNF284 113 43.0 Weakly correlated
5 ZNF2 97 99.0 Weakly correlated
6 ZFP37 75 99.0 Weakly correlated
7 ZNF18 69 160.0 Weakly correlated
8 ZNF101 61 43.0 Weakly correlated
9 ZNF324 55 99.0 Weakly correlated
10 ZFP69B 53 99.0 Weakly correlated
11 ZNF766 51 43.0 Weakly correlated
12 ZNF680 49 28.9 Weakly correlated
13 ZNF519 47 19.6 Weakly correlated
14 ZNF558 40 99.0 Weakly correlated
15 ZNF257 36 0.0 Weakly correlated
16 ZNF175 30 94.0 Weakly correlated
17 ZNF589 30 28.9 Weakly correlated
18 ZNF610 30 28.9 Weakly correlated
19 ZIM3 29 87.0 Weakly correlated
20 ZNF263 29 180.0 Weakly correlated
21 ZNF705B 29 28.9 Weakly correlated
22 ZKSCAN8 28 160.0 Weakly correlated
23 ZNF792 28 94.0 Weakly correlated
24 ZKSCAN1 27 160.0 Weakly correlated
25 ZNF182 27 99.0 Weakly correlated
26 ZNF251 23 94.0 Weakly correlated
27 ZNF140 22 99.0 Weakly correlated
28 ZNF317 20 99.0 Weakly correlated
29 ZNF429 18 28.9 Weakly correlated
30 ZNF705D 18 28.9 Weakly correlated
31 ZNF584 17 99.0 Weakly correlated
32 ZNF506 16 28.9 Weakly correlated
33 ZNF534 16 19.6 Weakly correlated
34 ZNF264 15 99.0 Weakly correlated
35 ZNF723 15 15.2 Weakly correlated
36 ZNF197 14 99.0 Weakly correlated
37 ZNF479 14 6.4 Weakly correlated
38 ZNF202 12 160.0 Weakly correlated
39 ZNF641 12 99.0 Weakly correlated
40 ZNF460 11 74.0 Highly correlated
41 ZNF547 11 74.0 Highly correlated
42 ZNF92 11 28.9 Weakly correlated
43 ZNF528 10 43.0 Weakly correlated
44 ZNF679 10 28.9 Weakly correlated
45 ZNF707 10 74.0 Highly correlated
46 ZFP57 9 87.0 Weakly correlated
47 ZNF334 9 99.0 Weakly correlated
48 ZNF486 9 8.6 Weakly correlated
49 ZNF695 9 28.9 Weakly correlated
50 ZNF8 9 99.0 Weakly correlated
51 ZNF485 8 94.0 Weakly correlated
52 ZNF701 8 28.9 Weakly correlated
53 ZNF160 7 74.0 Highly correlated
54 ZNF320 7 28.9 Weakly correlated
55 ZNF471 7 94.0 Weakly correlated
56 ZNF554 7 99.0 Weakly correlated
57 ZNF75D 7 94.0 Weakly correlated
58 ZNF786 7 99.0 Weakly correlated
59 ZNF793 7 99.0 Weakly correlated
60 ZNF585A 6 99.0 Weakly correlated
61 ZNF248 5 99.0 Weakly correlated
62 ZNF287 5 99.0 Weakly correlated
63 ZNF425 5 94.0 Weakly correlated
64 ZNF490 5 43.0 Weakly correlated
65 ZNF778 5 74.0 Highly correlated
66 ZKSCAN2 4 180.0 Weakly correlated
67 ZKSCAN5 4 160.0 Weakly correlated
68 ZNF136 4 74.0 Highly correlated
69 ZNF141 4 43.0 Weakly correlated
70 ZNF350 4 99.0 Weakly correlated
71 ZNF585B 4 99.0 Weakly correlated
72 ZNF597 4 94.0 Weakly correlated
73 ZNF682 4 28.9 Weakly correlated
74 ZNF763 4 15.2 Weakly correlated
75 ZNF169 3 94.0 Weakly correlated
76 ZNF211 3 94.0 Weakly correlated
77 ZNF230 3 28.9 Weakly correlated
78 ZNF273 3 28.9 Weakly correlated
79 ZNF28 3 28.9 Weakly correlated
80 ZNF33A 3 99.0 Weakly correlated
81 ZNF445 3 99.0 Weakly correlated
82 ZNF560 3 43.0 Weakly correlated
83 ZNF671 3 94.0 Weakly correlated
84 ZNF75A 3 94.0 Weakly correlated
85 ZNF816 3 28.9 Weakly correlated
86 ZNF84 3 99.0 Weakly correlated
87 ZNF878 3 43.0 Weakly correlated
88 ZFP28 2 99.0 Weakly correlated
89 ZNF10 2 99.0 Weakly correlated
90 ZNF133 2 99.0 Weakly correlated
91 ZNF135 2 94.0 Weakly correlated
92 ZNF157 2 99.0 Weakly correlated
93 ZNF225 2 74.0 Highly correlated
94 ZNF234 2 99.0 Weakly correlated
95 ZNF26 2 99.0 Weakly correlated
96 ZNF274 2 99.0 Weakly correlated
97 ZNF282 2 319.0 Weakly correlated
98 ZNF331 2 94.0 Weakly correlated
99 ZNF347 2 43.0 Weakly correlated
100 ZNF41 2 99.0 Weakly correlated
101 ZNF468 2 28.9 Weakly correlated
102 ZNF627 2 74.0 Highly correlated
103 ZNF649 2 28.9 Weakly correlated
104 ZNF735 2 28.9 Weakly correlated
105 ZNF736 2 43.0 Weakly correlated
106 ZNF780A 2 43.0 Weakly correlated
107 ZNF91 2 6.0 Weakly correlated
108 ZFP30 1 99.0 Weakly correlated
109 ZFP69 1 99.0 Weakly correlated
110 ZIK1 1 87.0 Weakly correlated
111 ZKSCAN4 1 99.0 Weakly correlated
112 ZNF100 1 28.9 Weakly correlated
113 ZNF12 1 99.0 Weakly correlated
114 ZNF177 1 94.0 Weakly correlated
115 ZNF233 1 99.0 Weakly correlated
116 ZNF283 1 99.0 Weakly correlated
117 ZNF286A 1 160.0 Weakly correlated
118 ZNF33B 1 99.0 Weakly correlated
119 ZNF354C 1 99.0 Weakly correlated
120 ZNF417 1 28.9 Weakly correlated
121 ZNF433 1 43.0 Weakly correlated
122 ZNF439 1 8.6 Weakly correlated
123 ZNF43 1 43.0 Weakly correlated
124 ZNF440 1 28.9 Weakly correlated
125 ZNF44 1 43.0 Weakly correlated
126 ZNF530 1 28.9 Weakly correlated
127 ZNF544 1 0.0 Weakly correlated
128 ZNF549 1 87.0 Weakly correlated
129 ZNF559 1 74.0 Highly correlated
130 ZNF573 1 94.0 Weakly correlated
131 ZNF583 1 99.0 Weakly correlated
132 ZNF596 1 94.0 Weakly correlated
133 ZNF605 1 99.0 Weakly correlated
134 ZNF607 1 43.0 Weakly correlated
135 ZNF611 1 19.6 Weakly correlated
136 ZNF613 1 99.0 Weakly correlated
137 ZNF614 1 99.0 Weakly correlated
138 ZNF616 1 43.0 Weakly correlated
139 ZNF626 1 0.0 Weakly correlated
140 ZNF705E 1 0.0 Weakly correlated
141 ZNF730 1 19.6 Weakly correlated
142 ZNF747 1 43.0 Weakly correlated
143 ZNF77 1 87.0 Weakly correlated
144 ZNF808 1 19.6 Weakly correlated
145 ZNF813 1 28.9 Weakly correlated
146 ZNF81 1 99.0 Weakly correlated
147 ZNF846 1 74.0 Highly correlated
148 ZNF85 1 28.9 Weakly correlated
149 ZNF879 1 99.0 Weakly correlated
150 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 118 43.0 Weakly correlated
2 ZNF284 100 43.0 Weakly correlated
3 ZNF519 42 19.6 Weakly correlated
4 ZNF101 35 43.0 Weakly correlated
5 ZNF257 31 0.0 Weakly correlated
6 ZNF182 24 99.0 Weakly correlated
7 ZFP37 22 99.0 Weakly correlated
8 ZNF394 21 99.0 Weakly correlated
9 ZNF18 21 160.0 Weakly correlated
10 ZNF610 17 28.9 Weakly correlated
11 ZNF140 14 99.0 Weakly correlated
12 ZNF382 14 99.0 Weakly correlated
13 ZNF429 12 28.9 Weakly correlated
14 ZNF792 11 94.0 Weakly correlated
15 ZNF506 10 28.9 Weakly correlated
16 ZNF264 10 99.0 Weakly correlated
17 ZNF460 9 74.0 Highly correlated
18 ZNF534 8 19.6 Weakly correlated
19 ZNF695 7 28.9 Weakly correlated
20 ZNF334 7 99.0 Weakly correlated
21 ZNF324 6 99.0 Weakly correlated
22 ZNF641 6 99.0 Weakly correlated
23 ZNF786 5 99.0 Weakly correlated
24 ZNF202 4 160.0 Weakly correlated
25 ZNF705D 4 28.9 Weakly correlated
26 ZNF425 3 94.0 Weakly correlated
27 ZNF2 3 99.0 Weakly correlated
28 ZIM3 3 87.0 Weakly correlated
29 ZFP57 2 87.0 Weakly correlated
30 ZNF705B 2 28.9 Weakly correlated
31 ZNF680 2 28.9 Weakly correlated
32 ZNF287 2 99.0 Weakly correlated
33 ZNF263 2 180.0 Weakly correlated
34 ZNF585A 2 99.0 Weakly correlated
35 ZFP69B 2 99.0 Weakly correlated
36 ZNF682 2 28.9 Weakly correlated
37 ZNF28 1 28.9 Weakly correlated
38 ZNF485 1 94.0 Weakly correlated
39 ZNF471 1 94.0 Weakly correlated
40 ZIK1 1 87.0 Weakly correlated
41 ZNF780A 1 43.0 Weakly correlated
42 ZNF135 1 94.0 Weakly correlated
43 ZNF141 1 43.0 Weakly correlated
44 ZNF169 1 94.0 Weakly correlated
45 ZNF554 1 99.0 Weakly correlated
46 ZNF440 1 28.9 Weakly correlated
47 ZNF251 1 94.0 Weakly correlated
48 ZNF616 1 43.0 Weakly correlated
49 ZNF468 1 28.9 Weakly correlated
50 ZNF445 1 99.0 Weakly correlated
51 ZNF735 1 28.9 Weakly correlated
52 ZNF671 1 94.0 Weakly correlated
53 ZNF793 1 99.0 Weakly correlated
54 ZNF846 1 74.0 Highly correlated
55 ZNF558 1 99.0 Weakly correlated
56 ZNF479 1 6.4 Weakly correlated
57 ZNF225 1 74.0 Highly correlated
58 ZNF736 1 43.0 Weakly correlated
59 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF382 99.0 Weakly correlated
5 ZNF429 28.9 Weakly correlated
6 ZNF441 43.0 Weakly correlated
7 ZNF506 28.9 Weakly correlated
8 ZNF695 28.9 Weakly correlated