ZRdb KZFP & Repeats
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SINE_ALUSG

  • Name
    ALUSG
  • Repbase
    AluSg
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000039
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker. This element is described in"Origin and evolution of Alu repetitive elements"; Jurka J.; MolecularBiology Intelligence Unit:The impact of short interspersed elements(SINEs) on the host genome (ed. Richard J. Maraia), R.G. Landes Company,Austin, pp.25-41 (1995)
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 1065 99.0 Weakly correlated
2 ZNF382 1031 99.0 Weakly correlated
3 ZNF284 574 43.0 Weakly correlated
4 ZNF2 568 99.0 Weakly correlated
5 ZNF441 558 43.0 Weakly correlated
6 ZFP37 380 99.0 Weakly correlated
7 ZNF18 350 160.0 Weakly correlated
8 ZNF101 314 43.0 Weakly correlated
9 ZFP69B 304 99.0 Weakly correlated
10 ZNF766 282 43.0 Weakly correlated
11 ZNF324 281 99.0 Weakly correlated
12 ZNF680 266 28.9 Weakly correlated
13 ZNF519 235 19.6 Weakly correlated
14 ZNF558 234 99.0 Weakly correlated
15 ZNF610 204 28.9 Weakly correlated
16 ZNF257 179 0.0 Weakly correlated
17 ZNF182 175 99.0 Weakly correlated
18 ZNF792 155 94.0 Weakly correlated
19 ZNF140 154 99.0 Weakly correlated
20 ZNF705B 148 28.9 Weakly correlated
21 ZKSCAN1 135 160.0 Weakly correlated
22 ZNF589 127 28.9 Weakly correlated
23 ZNF263 123 180.0 Weakly correlated
24 ZNF175 117 94.0 Weakly correlated
25 ZNF506 116 28.9 Weakly correlated
26 ZNF534 114 19.6 Weakly correlated
27 ZIM3 105 87.0 Weakly correlated
28 ZNF202 93 160.0 Weakly correlated
29 ZNF547 92 74.0 Highly correlated
30 ZNF460 91 74.0 Highly correlated
31 ZNF251 88 94.0 Weakly correlated
32 ZNF317 86 99.0 Weakly correlated
33 ZNF679 83 28.9 Weakly correlated
34 ZNF705D 75 28.9 Weakly correlated
35 ZKSCAN8 74 160.0 Weakly correlated
36 ZNF8 74 99.0 Weakly correlated
37 ZNF429 73 28.9 Weakly correlated
38 ZNF479 70 6.4 Weakly correlated
39 ZNF707 69 74.0 Highly correlated
40 ZNF585B 64 99.0 Weakly correlated
41 ZNF641 63 99.0 Weakly correlated
42 ZFP57 61 87.0 Weakly correlated
43 ZNF584 59 99.0 Weakly correlated
44 ZNF197 57 99.0 Weakly correlated
45 ZNF723 56 15.2 Weakly correlated
46 ZNF264 48 99.0 Weakly correlated
47 ZNF793 47 99.0 Weakly correlated
48 ZNF486 43 8.6 Weakly correlated
49 ZNF28 42 28.9 Weakly correlated
50 ZNF490 42 43.0 Weakly correlated
51 ZNF554 42 99.0 Weakly correlated
52 ZNF695 41 28.9 Weakly correlated
53 ZNF597 40 94.0 Weakly correlated
54 ZNF92 39 28.9 Weakly correlated
55 ZNF485 36 94.0 Weakly correlated
56 ZNF701 35 28.9 Weakly correlated
57 ZNF334 29 99.0 Weakly correlated
58 ZNF585A 29 99.0 Weakly correlated
59 ZNF528 28 43.0 Weakly correlated
60 ZNF287 27 99.0 Weakly correlated
61 ZNF778 25 74.0 Highly correlated
62 ZNF75D 23 94.0 Weakly correlated
63 ZNF133 22 99.0 Weakly correlated
64 ZNF786 20 99.0 Weakly correlated
65 ZNF84 20 99.0 Weakly correlated
66 ZNF160 18 74.0 Highly correlated
67 ZNF274 18 99.0 Weakly correlated
68 ZKSCAN5 17 160.0 Weakly correlated
69 ZNF445 17 99.0 Weakly correlated
70 ZNF320 16 28.9 Weakly correlated
71 ZNF682 16 28.9 Weakly correlated
72 ZNF136 15 74.0 Highly correlated
73 ZNF674 15 99.0 Weakly correlated
74 ZNF879 15 99.0 Weakly correlated
75 ZNF169 14 94.0 Weakly correlated
76 ZNF248 14 99.0 Weakly correlated
77 ZNF354C 14 99.0 Weakly correlated
78 ZFP28 13 99.0 Weakly correlated
79 ZNF100 13 28.9 Weakly correlated
80 ZNF141 12 43.0 Weakly correlated
81 ZNF616 12 43.0 Weakly correlated
82 ZFP69 11 99.0 Weakly correlated
83 ZNF273 11 28.9 Weakly correlated
84 ZNF331 11 94.0 Weakly correlated
85 ZNF471 11 94.0 Weakly correlated
86 ZNF671 11 94.0 Weakly correlated
87 ZNF730 11 19.6 Weakly correlated
88 ZNF222 10 43.0 Weakly correlated
89 ZNF347 10 43.0 Weakly correlated
90 ZNF468 10 28.9 Weakly correlated
91 ZNF675 10 8.6 Weakly correlated
92 ZNF230 9 28.9 Weakly correlated
93 ZNF282 9 319.0 Weakly correlated
94 ZNF560 9 43.0 Weakly correlated
95 ZNF649 9 28.9 Weakly correlated
96 ZNF26 8 99.0 Weakly correlated
97 ZNF549 8 87.0 Weakly correlated
98 ZNF735 8 28.9 Weakly correlated
99 ZNF10 7 99.0 Weakly correlated
100 ZNF189 7 99.0 Weakly correlated
101 ZNF33A 7 99.0 Weakly correlated
102 ZNF425 7 94.0 Weakly correlated
103 ZNF480 7 43.0 Weakly correlated
104 ZNF605 7 99.0 Weakly correlated
105 ZNF716 7 19.6 Weakly correlated
106 ZNF93 7 8.6 Weakly correlated
107 ZNF124 6 43.0 Weakly correlated
108 ZNF135 6 94.0 Weakly correlated
109 ZNF420 6 94.0 Weakly correlated
110 ZNF611 6 19.6 Weakly correlated
111 ZNF780A 6 43.0 Weakly correlated
112 ZNF81 6 99.0 Weakly correlated
113 ZNF91 6 6.0 Weakly correlated
114 ZKSCAN2 5 180.0 Weakly correlated
115 ZNF211 5 94.0 Weakly correlated
116 ZNF436 5 180.0 Weakly correlated
117 ZNF563 5 28.9 Weakly correlated
118 ZNF627 5 74.0 Highly correlated
119 ZNF658 5 99.0 Weakly correlated
120 ZNF700 5 28.9 Weakly correlated
121 ZNF823 5 43.0 Weakly correlated
122 ZNF878 5 43.0 Weakly correlated
123 ZFP30 4 99.0 Weakly correlated
124 ZIK1 4 87.0 Weakly correlated
125 ZNF12 4 99.0 Weakly correlated
126 ZNF343 4 74.0 Highly correlated
127 ZNF354A 4 99.0 Weakly correlated
128 ZNF44 4 43.0 Weakly correlated
129 ZNF587 4 28.9 Weakly correlated
130 ZNF677 4 99.0 Weakly correlated
131 ZNF765 4 8.6 Weakly correlated
132 ZNF799 4 43.0 Weakly correlated
133 ZNF816 4 28.9 Weakly correlated
134 ZNF85 4 28.9 Weakly correlated
135 ZNF157 3 99.0 Weakly correlated
136 ZNF17 3 69.0 Moderately correlated
137 ZNF417 3 28.9 Weakly correlated
138 ZNF41 3 99.0 Weakly correlated
139 ZNF433 3 43.0 Weakly correlated
140 ZNF43 3 43.0 Weakly correlated
141 ZNF440 3 28.9 Weakly correlated
142 ZNF483 3 99.0 Weakly correlated
143 ZNF567 3 99.0 Weakly correlated
144 ZNF573 3 94.0 Weakly correlated
145 ZNF684 3 99.0 Weakly correlated
146 ZNF777 3 319.0 Weakly correlated
147 ZNF789 3 99.0 Weakly correlated
148 PRDM9 2 0.0 Weakly correlated
149 ZFP1 2 99.0 Weakly correlated
150 ZNF205 2 180.0 Weakly correlated
151 ZNF225 2 74.0 Highly correlated
152 ZNF253 2 19.6 Weakly correlated
153 ZNF283 2 99.0 Weakly correlated
154 ZNF286A 2 160.0 Weakly correlated
155 ZNF304 2 99.0 Weakly correlated
156 ZNF333 2 99.0 Weakly correlated
157 ZNF337 2 43.0 Weakly correlated
158 ZNF350 2 99.0 Weakly correlated
159 ZNF419 2 28.9 Weakly correlated
160 ZNF431 2 28.9 Weakly correlated
161 ZNF432 2 99.0 Weakly correlated
162 ZNF454 2 99.0 Weakly correlated
163 ZNF510 2 99.0 Weakly correlated
164 ZNF530 2 28.9 Weakly correlated
165 ZNF555 2 94.0 Weakly correlated
166 ZNF557 2 15.2 Weakly correlated
167 ZNF564 2 74.0 Highly correlated
168 ZNF568 2 99.0 Weakly correlated
169 ZNF583 2 99.0 Weakly correlated
170 ZNF586 2 43.0 Weakly correlated
171 ZNF613 2 99.0 Weakly correlated
172 ZNF681 2 28.9 Weakly correlated
173 ZNF736 2 43.0 Weakly correlated
174 ZNF75A 2 94.0 Weakly correlated
175 ZNF845 2 28.9 Weakly correlated
176 RBAK 1 99.0 Weakly correlated
177 ZFP14 1 99.0 Weakly correlated
178 ZFP90 1 99.0 Weakly correlated
179 ZIM2 1 0.0 Weakly correlated
180 ZNF180 1 99.0 Weakly correlated
181 ZNF184 1 99.0 Weakly correlated
182 ZNF223 1 43.0 Weakly correlated
183 ZNF224 1 69.0 Moderately correlated
184 ZNF235 1 99.0 Weakly correlated
185 ZNF267 1 43.0 Weakly correlated
186 ZNF302 1 43.0 Weakly correlated
187 ZNF383 1 99.0 Weakly correlated
188 ZNF3 1 160.0 Weakly correlated
189 ZNF430 1 19.6 Weakly correlated
190 ZNF442 1 43.0 Weakly correlated
191 ZNF45 1 99.0 Weakly correlated
192 ZNF496 1 99.0 Weakly correlated
193 ZNF514 1 94.0 Weakly correlated
194 ZNF527 1 99.0 Weakly correlated
195 ZNF529 1 99.0 Weakly correlated
196 ZNF543 1 99.0 Weakly correlated
197 ZNF548 1 94.0 Weakly correlated
198 ZNF565 1 99.0 Weakly correlated
199 ZNF566 1 99.0 Weakly correlated
200 ZNF571 1 99.0 Weakly correlated
201 ZNF595 1 43.0 Weakly correlated
202 ZNF626 1 0.0 Weakly correlated
203 ZNF665 1 28.9 Weakly correlated
204 ZNF66 1 0.0 Weakly correlated
205 ZNF689 1 99.0 Weakly correlated
206 ZNF727 1 19.6 Weakly correlated
207 ZNF747 1 43.0 Weakly correlated
208 ZNF77 1 87.0 Weakly correlated
209 ZNF782 1 99.0 Weakly correlated
210 ZNF808 1 19.6 Weakly correlated
211 ZNF846 1 74.0 Highly correlated
212 ZNF850 1 28.9 Weakly correlated
213 ZNF860 1 0.0 Weakly correlated
214 ZNF891 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 521 43.0 Weakly correlated
2 ZNF441 506 43.0 Weakly correlated
3 ZNF519 219 19.6 Weakly correlated
4 ZNF101 207 43.0 Weakly correlated
5 ZNF382 156 99.0 Weakly correlated
6 ZNF182 152 99.0 Weakly correlated
7 ZNF394 151 99.0 Weakly correlated
8 ZNF140 116 99.0 Weakly correlated
9 ZNF257 116 0.0 Weakly correlated
10 ZNF18 115 160.0 Weakly correlated
11 ZNF610 103 28.9 Weakly correlated
12 ZNF792 92 94.0 Weakly correlated
13 ZNF460 84 74.0 Highly correlated
14 ZNF506 84 28.9 Weakly correlated
15 ZFP37 83 99.0 Weakly correlated
16 ZNF429 61 28.9 Weakly correlated
17 ZNF202 54 160.0 Weakly correlated
18 ZNF534 50 19.6 Weakly correlated
19 ZNF641 43 99.0 Weakly correlated
20 ZNF264 34 99.0 Weakly correlated
21 ZNF695 26 28.9 Weakly correlated
22 ZNF334 22 99.0 Weakly correlated
23 ZNF287 19 99.0 Weakly correlated
24 ZNF445 12 99.0 Weakly correlated
25 ZNF616 11 43.0 Weakly correlated
26 ZNF786 10 99.0 Weakly correlated
27 ZNF707 10 74.0 Highly correlated
28 ZNF705D 9 28.9 Weakly correlated
29 ZNF705B 9 28.9 Weakly correlated
30 ZNF680 8 28.9 Weakly correlated
31 ZNF585A 7 99.0 Weakly correlated
32 ZNF324 6 99.0 Weakly correlated
33 ZIM3 6 87.0 Weakly correlated
34 ZNF554 5 99.0 Weakly correlated
35 ZNF674 5 99.0 Weakly correlated
36 ZFP57 5 87.0 Weakly correlated
37 ZKSCAN5 5 160.0 Weakly correlated
38 ZNF2 5 99.0 Weakly correlated
39 ZNF766 5 43.0 Weakly correlated
40 ZNF263 4 180.0 Weakly correlated
41 ZNF485 4 94.0 Weakly correlated
42 ZNF597 4 94.0 Weakly correlated
43 ZNF468 4 28.9 Weakly correlated
44 ZNF141 4 43.0 Weakly correlated
45 ZNF222 4 43.0 Weakly correlated
46 ZNF793 3 99.0 Weakly correlated
47 ZNF723 3 15.2 Weakly correlated
48 ZNF823 3 43.0 Weakly correlated
49 ZNF558 3 99.0 Weakly correlated
50 ZNF84 3 99.0 Weakly correlated
51 ZNF169 3 94.0 Weakly correlated
52 ZNF560 3 43.0 Weakly correlated
53 ZNF135 3 94.0 Weakly correlated
54 ZNF789 3 99.0 Weakly correlated
55 ZNF28 2 28.9 Weakly correlated
56 ZNF780A 2 43.0 Weakly correlated
57 ZNF701 2 28.9 Weakly correlated
58 ZNF684 2 99.0 Weakly correlated
59 ZFP28 2 99.0 Weakly correlated
60 ZNF225 2 74.0 Highly correlated
61 ZNF471 2 94.0 Weakly correlated
62 ZNF251 2 94.0 Weakly correlated
63 ZNF283 2 99.0 Weakly correlated
64 ZNF479 2 6.4 Weakly correlated
65 ZNF568 1 99.0 Weakly correlated
66 ZNF425 1 94.0 Weakly correlated
67 ZNF420 1 94.0 Weakly correlated
68 ZNF671 1 94.0 Weakly correlated
69 ZNF486 1 8.6 Weakly correlated
70 ZNF547 1 74.0 Highly correlated
71 ZNF782 1 99.0 Weakly correlated
72 ZNF677 1 99.0 Weakly correlated
73 ZNF136 1 74.0 Highly correlated
74 ZNF44 1 43.0 Weakly correlated
75 ZNF587 1 28.9 Weakly correlated
76 ZNF75D 1 94.0 Weakly correlated
77 ZNF850 1 28.9 Weakly correlated
78 ZNF273 1 28.9 Weakly correlated
79 ZNF440 1 28.9 Weakly correlated
80 ZNF567 1 99.0 Weakly correlated
81 ZNF8 1 99.0 Weakly correlated
82 ZNF735 1 28.9 Weakly correlated
83 ZNF197 1 99.0 Weakly correlated
84 ZNF320 1 28.9 Weakly correlated
85 ZNF331 1 94.0 Weakly correlated
86 ZNF417 1 28.9 Weakly correlated
87 ZNF589 1 28.9 Weakly correlated
88 ZNF679 1 28.9 Weakly correlated
89 ZNF730 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF287 99.0 Weakly correlated
5 ZNF382 99.0 Weakly correlated
6 ZNF429 28.9 Weakly correlated
7 ZNF441 43.0 Weakly correlated
8 ZNF445 99.0 Weakly correlated
9 ZNF506 28.9 Weakly correlated
10 ZNF585A 99.0 Weakly correlated
11 ZNF695 28.9 Weakly correlated
12 ZNF792 94.0 Weakly correlated