ZRdb KZFP & Repeats
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SINE_ALUSC8

  • Name
    ALUSC8
  • Repbase
    AluSc8
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000038
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcacgcgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 553 99.0 Weakly correlated
2 ZNF394 538 99.0 Weakly correlated
3 ZNF441 440 43.0 Weakly correlated
4 ZNF284 364 43.0 Weakly correlated
5 ZNF2 251 99.0 Weakly correlated
6 ZNF18 197 160.0 Weakly correlated
7 ZNF680 158 28.9 Weakly correlated
8 ZNF519 154 19.6 Weakly correlated
9 ZNF101 153 43.0 Weakly correlated
10 ZFP37 147 99.0 Weakly correlated
11 ZNF257 133 0.0 Weakly correlated
12 ZNF766 131 43.0 Weakly correlated
13 ZFP69B 127 99.0 Weakly correlated
14 ZNF324 126 99.0 Weakly correlated
15 ZNF558 115 99.0 Weakly correlated
16 ZNF182 111 99.0 Weakly correlated
17 ZNF705B 104 28.9 Weakly correlated
18 ZKSCAN1 93 160.0 Weakly correlated
19 ZNF610 92 28.9 Weakly correlated
20 ZIM3 90 87.0 Weakly correlated
21 ZNF317 80 99.0 Weakly correlated
22 ZNF140 77 99.0 Weakly correlated
23 ZNF202 67 160.0 Weakly correlated
24 ZNF792 67 94.0 Weakly correlated
25 ZNF251 65 94.0 Weakly correlated
26 ZNF534 65 19.6 Weakly correlated
27 ZNF589 62 28.9 Weakly correlated
28 ZNF263 60 180.0 Weakly correlated
29 ZNF705D 56 28.9 Weakly correlated
30 ZFP57 55 87.0 Weakly correlated
31 ZNF547 55 74.0 Highly correlated
32 ZNF679 49 28.9 Weakly correlated
33 ZNF175 48 94.0 Weakly correlated
34 ZNF506 48 28.9 Weakly correlated
35 ZNF460 47 74.0 Highly correlated
36 ZNF429 42 28.9 Weakly correlated
37 ZNF479 42 6.4 Weakly correlated
38 ZNF723 42 15.2 Weakly correlated
39 ZNF585B 40 99.0 Weakly correlated
40 ZKSCAN8 39 160.0 Weakly correlated
41 ZNF695 39 28.9 Weakly correlated
42 ZNF264 38 99.0 Weakly correlated
43 ZNF8 37 99.0 Weakly correlated
44 ZNF793 33 99.0 Weakly correlated
45 ZNF486 32 8.6 Weakly correlated
46 ZNF75D 32 94.0 Weakly correlated
47 ZNF84 32 99.0 Weakly correlated
48 ZNF641 31 99.0 Weakly correlated
49 ZNF197 29 99.0 Weakly correlated
50 ZNF28 29 28.9 Weakly correlated
51 ZNF554 28 99.0 Weakly correlated
52 ZNF707 26 74.0 Highly correlated
53 ZNF92 25 28.9 Weakly correlated
54 ZNF274 23 99.0 Weakly correlated
55 ZNF778 23 74.0 Highly correlated
56 ZNF584 22 99.0 Weakly correlated
57 ZNF528 21 43.0 Weakly correlated
58 ZNF597 21 94.0 Weakly correlated
59 ZNF700 21 28.9 Weakly correlated
60 ZNF786 21 99.0 Weakly correlated
61 ZNF287 20 99.0 Weakly correlated
62 ZNF490 20 43.0 Weakly correlated
63 ZNF701 20 28.9 Weakly correlated
64 ZNF160 19 74.0 Highly correlated
65 ZNF485 19 94.0 Weakly correlated
66 ZNF445 18 99.0 Weakly correlated
67 ZNF735 17 28.9 Weakly correlated
68 ZNF133 16 99.0 Weakly correlated
69 ZNF471 16 94.0 Weakly correlated
70 ZNF878 16 43.0 Weakly correlated
71 ZNF320 15 28.9 Weakly correlated
72 ZNF585A 15 99.0 Weakly correlated
73 ZNF136 14 74.0 Highly correlated
74 ZNF141 14 43.0 Weakly correlated
75 ZNF425 14 94.0 Weakly correlated
76 ZNF560 14 43.0 Weakly correlated
77 ZNF100 13 28.9 Weakly correlated
78 ZNF331 13 94.0 Weakly correlated
79 ZNF347 12 43.0 Weakly correlated
80 ZNF682 12 28.9 Weakly correlated
81 ZNF334 11 99.0 Weakly correlated
82 ZFP28 10 99.0 Weakly correlated
83 ZFP30 10 99.0 Weakly correlated
84 ZNF230 10 28.9 Weakly correlated
85 ZNF420 10 94.0 Weakly correlated
86 ZNF510 10 99.0 Weakly correlated
87 ZNF514 10 94.0 Weakly correlated
88 ZNF549 10 87.0 Weakly correlated
89 ZNF677 10 99.0 Weakly correlated
90 ZNF689 10 99.0 Weakly correlated
91 ZNF727 10 19.6 Weakly correlated
92 ZNF823 10 43.0 Weakly correlated
93 ZNF234 9 99.0 Weakly correlated
94 ZNF416 9 43.0 Weakly correlated
95 ZNF461 9 99.0 Weakly correlated
96 ZNF483 9 99.0 Weakly correlated
97 ZNF583 9 99.0 Weakly correlated
98 ZNF699 9 99.0 Weakly correlated
99 ZNF761 9 19.6 Weakly correlated
100 ZNF763 9 15.2 Weakly correlated
101 ZNF845 9 28.9 Weakly correlated
102 ZNF850 9 28.9 Weakly correlated
103 ZKSCAN2 8 180.0 Weakly correlated
104 ZKSCAN4 8 99.0 Weakly correlated
105 ZKSCAN5 8 160.0 Weakly correlated
106 ZNF114 8 28.9 Weakly correlated
107 ZNF135 8 94.0 Weakly correlated
108 ZNF169 8 94.0 Weakly correlated
109 ZNF20 8 43.0 Weakly correlated
110 ZNF215 8 99.0 Weakly correlated
111 ZNF221 8 74.0 Highly correlated
112 ZNF253 8 19.6 Weakly correlated
113 ZNF286A 8 160.0 Weakly correlated
114 ZNF30 8 94.0 Weakly correlated
115 ZNF446 8 94.0 Weakly correlated
116 ZNF473 8 43.0 Weakly correlated
117 ZNF500 8 160.0 Weakly correlated
118 ZNF544 8 0.0 Weakly correlated
119 ZNF559 8 74.0 Highly correlated
120 ZNF568 8 99.0 Weakly correlated
121 ZNF569 8 99.0 Weakly correlated
122 ZNF578 8 15.2 Weakly correlated
123 ZNF607 8 43.0 Weakly correlated
124 ZNF66 8 0.0 Weakly correlated
125 ZNF688 8 160.0 Weakly correlated
126 ZNF705E 8 0.0 Weakly correlated
127 ZNF717 8 0.0 Weakly correlated
128 ZNF726 8 28.9 Weakly correlated
129 ZNF728 8 19.6 Weakly correlated
130 ZNF729 8 8.6 Weakly correlated
131 ZNF746 8 99.0 Weakly correlated
132 ZNF813 8 28.9 Weakly correlated
133 ZNF879 8 99.0 Weakly correlated
134 ZNF12 7 99.0 Weakly correlated
135 ZNF177 7 94.0 Weakly correlated
136 ZNF233 7 99.0 Weakly correlated
137 ZNF256 7 74.0 Highly correlated
138 ZNF282 7 319.0 Weakly correlated
139 ZNF426 7 87.0 Weakly correlated
140 ZNF546 7 99.0 Weakly correlated
141 ZNF616 7 43.0 Weakly correlated
142 ZNF671 7 94.0 Weakly correlated
143 ZNF718 7 19.6 Weakly correlated
144 ZNF747 7 43.0 Weakly correlated
145 ZNF772 7 94.0 Weakly correlated
146 ZNF77 7 87.0 Weakly correlated
147 ZNF814 7 0.0 Weakly correlated
148 ZNF91 7 6.0 Weakly correlated
149 ZFP69 6 99.0 Weakly correlated
150 ZNF189 6 99.0 Weakly correlated
151 ZNF195 6 28.9 Weakly correlated
152 ZNF213 6 180.0 Weakly correlated
153 ZNF229 6 99.0 Weakly correlated
154 ZNF26 6 99.0 Weakly correlated
155 ZNF273 6 28.9 Weakly correlated
156 ZNF33A 6 99.0 Weakly correlated
157 ZNF354A 6 99.0 Weakly correlated
158 ZNF354C 6 99.0 Weakly correlated
159 ZNF443 6 19.6 Weakly correlated
160 ZNF44 6 43.0 Weakly correlated
161 ZNF487 6 28.9 Weakly correlated
162 ZNF556 6 94.0 Weakly correlated
163 ZNF605 6 99.0 Weakly correlated
164 ZNF658 6 99.0 Weakly correlated
165 ZFP92 5 99.0 Weakly correlated
166 ZNF211 5 94.0 Weakly correlated
167 ZNF222 5 43.0 Weakly correlated
168 ZNF225 5 74.0 Highly correlated
169 ZNF440 5 28.9 Weakly correlated
170 ZNF454 5 99.0 Weakly correlated
171 ZNF468 5 28.9 Weakly correlated
172 ZNF551 5 94.0 Weakly correlated
173 ZNF563 5 28.9 Weakly correlated
174 ZNF675 5 8.6 Weakly correlated
175 ZNF730 5 19.6 Weakly correlated
176 ZNF765 5 8.6 Weakly correlated
177 ZNF816 5 28.9 Weakly correlated
178 ZNF81 5 99.0 Weakly correlated
179 ZFP82 4 99.0 Weakly correlated
180 ZNF10 4 99.0 Weakly correlated
181 ZNF248 4 99.0 Weakly correlated
182 ZNF250 4 99.0 Weakly correlated
183 ZNF350 4 99.0 Weakly correlated
184 ZNF41 4 99.0 Weakly correlated
185 ZNF480 4 43.0 Weakly correlated
186 ZNF57 4 28.9 Weakly correlated
187 ZNF582 4 99.0 Weakly correlated
188 ZNF596 4 94.0 Weakly correlated
189 ZNF674 4 99.0 Weakly correlated
190 ZNF684 4 99.0 Weakly correlated
191 ZNF808 4 19.6 Weakly correlated
192 ZNF85 4 28.9 Weakly correlated
193 ZNF157 3 99.0 Weakly correlated
194 ZNF184 3 99.0 Weakly correlated
195 ZNF302 3 43.0 Weakly correlated
196 ZNF304 3 99.0 Weakly correlated
197 ZNF333 3 99.0 Weakly correlated
198 ZNF337 3 43.0 Weakly correlated
199 ZNF419 3 28.9 Weakly correlated
200 ZNF436 3 180.0 Weakly correlated
201 ZNF43 3 43.0 Weakly correlated
202 ZNF555 3 94.0 Weakly correlated
203 ZNF557 3 15.2 Weakly correlated
204 ZNF561 3 43.0 Weakly correlated
205 ZNF565 3 99.0 Weakly correlated
206 ZNF567 3 99.0 Weakly correlated
207 ZNF573 3 94.0 Weakly correlated
208 ZNF577 3 94.0 Weakly correlated
209 ZNF586 3 43.0 Weakly correlated
210 ZNF611 3 19.6 Weakly correlated
211 ZNF613 3 99.0 Weakly correlated
212 ZNF669 3 43.0 Weakly correlated
213 ZNF75A 3 94.0 Weakly correlated
214 ZNF789 3 99.0 Weakly correlated
215 ZNF799 3 43.0 Weakly correlated
216 ZNF860 3 0.0 Weakly correlated
217 ZNF93 3 8.6 Weakly correlated
218 ZFP14 2 99.0 Weakly correlated
219 ZKSCAN7 2 99.0 Weakly correlated
220 ZNF124 2 43.0 Weakly correlated
221 ZNF14 2 69.0 Moderately correlated
222 ZNF17 2 69.0 Moderately correlated
223 ZNF19 2 99.0 Weakly correlated
224 ZNF205 2 180.0 Weakly correlated
225 ZNF224 2 69.0 Moderately correlated
226 ZNF267 2 43.0 Weakly correlated
227 ZNF283 2 99.0 Weakly correlated
228 ZNF343 2 74.0 Highly correlated
229 ZNF34 2 99.0 Weakly correlated
230 ZNF37A 2 99.0 Weakly correlated
231 ZNF417 2 28.9 Weakly correlated
232 ZNF418 2 43.0 Weakly correlated
233 ZNF432 2 99.0 Weakly correlated
234 ZNF433 2 43.0 Weakly correlated
235 ZNF439 2 8.6 Weakly correlated
236 ZNF527 2 99.0 Weakly correlated
237 ZNF529 2 99.0 Weakly correlated
238 ZNF530 2 28.9 Weakly correlated
239 ZNF550 2 94.0 Weakly correlated
240 ZNF571 2 99.0 Weakly correlated
241 ZNF627 2 74.0 Highly correlated
242 ZNF649 2 28.9 Weakly correlated
243 ZNF736 2 43.0 Weakly correlated
244 ZNF749 2 28.9 Weakly correlated
245 ZNF74 2 99.0 Weakly correlated
246 ZNF776 2 43.0 Weakly correlated
247 ZNF780A 2 43.0 Weakly correlated
248 ZNF791 2 87.0 Weakly correlated
249 ZNF846 2 74.0 Highly correlated
250 ZNF852 2 94.0 Weakly correlated
251 ZIM2 1 0.0 Weakly correlated
252 ZKSCAN3 1 99.0 Weakly correlated
253 ZNF154 1 94.0 Weakly correlated
254 ZNF180 1 99.0 Weakly correlated
255 ZNF212 1 160.0 Weakly correlated
256 ZNF214 1 99.0 Weakly correlated
257 ZNF254 1 43.0 Weakly correlated
258 ZNF268 1 94.0 Weakly correlated
259 ZNF354B 1 99.0 Weakly correlated
260 ZNF430 1 19.6 Weakly correlated
261 ZNF431 1 28.9 Weakly correlated
262 ZNF45 1 99.0 Weakly correlated
263 ZNF484 1 99.0 Weakly correlated
264 ZNF525 1 19.6 Weakly correlated
265 ZNF540 1 87.0 Weakly correlated
266 ZNF548 1 94.0 Weakly correlated
267 ZNF566 1 99.0 Weakly correlated
268 ZNF587 1 28.9 Weakly correlated
269 ZNF614 1 99.0 Weakly correlated
270 ZNF615 1 99.0 Weakly correlated
271 ZNF630 1 94.0 Weakly correlated
272 ZNF69 1 28.9 Weakly correlated
273 ZNF716 1 19.6 Weakly correlated
274 ZNF777 1 319.0 Weakly correlated
275 ZNF782 1 99.0 Weakly correlated
276 ZNF7 1 99.0 Weakly correlated
277 ZNF805 1 99.0 Weakly correlated
278 ZNF829 1 99.0 Weakly correlated
279 ZNF880 1 28.9 Weakly correlated
280 ZNF90 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 400 43.0 Weakly correlated
2 ZNF284 334 43.0 Weakly correlated
3 ZNF519 141 19.6 Weakly correlated
4 ZNF182 106 99.0 Weakly correlated
5 ZNF257 102 0.0 Weakly correlated
6 ZNF101 99 43.0 Weakly correlated
7 ZNF394 78 99.0 Weakly correlated
8 ZNF140 58 99.0 Weakly correlated
9 ZNF18 57 160.0 Weakly correlated
10 ZNF610 52 28.9 Weakly correlated
11 ZNF202 47 160.0 Weakly correlated
12 ZNF460 42 74.0 Highly correlated
13 ZNF792 39 94.0 Weakly correlated
14 ZNF429 36 28.9 Weakly correlated
15 ZNF695 30 28.9 Weakly correlated
16 ZFP37 27 99.0 Weakly correlated
17 ZNF506 25 28.9 Weakly correlated
18 ZNF264 22 99.0 Weakly correlated
19 ZNF534 20 19.6 Weakly correlated
20 ZNF382 17 99.0 Weakly correlated
21 ZNF641 15 99.0 Weakly correlated
22 ZNF445 13 99.0 Weakly correlated
23 ZIM3 12 87.0 Weakly correlated
24 ZNF786 12 99.0 Weakly correlated
25 ZNF287 11 99.0 Weakly correlated
26 ZNF705D 11 28.9 Weakly correlated
27 ZNF705B 9 28.9 Weakly correlated
28 ZFP57 8 87.0 Weakly correlated
29 ZNF560 8 43.0 Weakly correlated
30 ZNF425 7 94.0 Weakly correlated
31 ZNF334 7 99.0 Weakly correlated
32 ZNF324 7 99.0 Weakly correlated
33 ZNF700 6 28.9 Weakly correlated
34 ZNF420 6 94.0 Weakly correlated
35 ZNF680 6 28.9 Weakly correlated
36 ZNF823 6 43.0 Weakly correlated
37 ZNF485 5 94.0 Weakly correlated
38 ZNF177 5 94.0 Weakly correlated
39 ZNF707 5 74.0 Highly correlated
40 ZNF135 4 94.0 Weakly correlated
41 ZNF263 4 180.0 Weakly correlated
42 ZNF793 4 99.0 Weakly correlated
43 ZNF440 4 28.9 Weakly correlated
44 ZNF2 4 99.0 Weakly correlated
45 ZNF718 4 19.6 Weakly correlated
46 ZNF141 3 43.0 Weakly correlated
47 ZNF616 3 43.0 Weakly correlated
48 ZNF75D 3 94.0 Weakly correlated
49 ZNF568 3 99.0 Weakly correlated
50 ZFP69B 2 99.0 Weakly correlated
51 ZNF735 2 28.9 Weakly correlated
52 ZNF766 2 43.0 Weakly correlated
53 ZNF347 2 43.0 Weakly correlated
54 ZNF528 2 43.0 Weakly correlated
55 ZNF558 2 99.0 Weakly correlated
56 ZNF723 2 15.2 Weakly correlated
57 ZNF726 2 28.9 Weakly correlated
58 ZNF772 2 94.0 Weakly correlated
59 ZNF554 2 99.0 Weakly correlated
60 ZNF585A 2 99.0 Weakly correlated
61 ZNF468 2 28.9 Weakly correlated
62 ZNF746 2 99.0 Weakly correlated
63 ZNF688 2 160.0 Weakly correlated
64 ZNF701 2 28.9 Weakly correlated
65 ZKSCAN1 1 160.0 Weakly correlated
66 ZKSCAN5 1 160.0 Weakly correlated
67 ZNF100 1 28.9 Weakly correlated
68 ZNF10 1 99.0 Weakly correlated
69 ZNF136 1 74.0 Highly correlated
70 ZNF20 1 43.0 Weakly correlated
71 ZNF229 1 99.0 Weakly correlated
72 ZNF268 1 94.0 Weakly correlated
73 ZNF30 1 94.0 Weakly correlated
74 ZNF514 1 94.0 Weakly correlated
75 ZNF253 1 19.6 Weakly correlated
76 ZNF630 1 94.0 Weakly correlated
77 ZNF749 1 28.9 Weakly correlated
78 ZNF765 1 8.6 Weakly correlated
79 ZNF213 1 180.0 Weakly correlated
80 ZNF283 1 99.0 Weakly correlated
81 ZNF28 1 28.9 Weakly correlated
82 ZNF461 1 99.0 Weakly correlated
83 ZNF729 1 8.6 Weakly correlated
84 ZNF799 1 43.0 Weakly correlated
85 ZNF846 1 74.0 Highly correlated
86 ZNF92 1 28.9 Weakly correlated
87 ZNF169 1 94.0 Weakly correlated
88 ZNF250 1 99.0 Weakly correlated
89 ZNF544 1 0.0 Weakly correlated
90 ZNF547 1 74.0 Highly correlated
91 ZNF566 1 99.0 Weakly correlated
92 ZNF789 1 99.0 Weakly correlated
93 ZNF221 1 74.0 Highly correlated
94 ZNF222 1 43.0 Weakly correlated
95 ZNF254 1 43.0 Weakly correlated
96 ZNF317 1 99.0 Weakly correlated
97 ZNF487 1 28.9 Weakly correlated
98 ZNF577 1 94.0 Weakly correlated
99 ZNF596 1 94.0 Weakly correlated
100 ZNF607 1 43.0 Weakly correlated
101 ZNF682 1 28.9 Weakly correlated
102 ZNF763 1 15.2 Weakly correlated
103 ZNF84 1 99.0 Weakly correlated
104 ZNF354C 1 99.0 Weakly correlated
105 ZNF416 1 43.0 Weakly correlated
106 ZNF483 1 99.0 Weakly correlated
107 ZNF490 1 43.0 Weakly correlated
108 ZNF597 1 94.0 Weakly correlated
109 ZNF160 1 74.0 Highly correlated
110 ZNF195 1 28.9 Weakly correlated
111 ZNF225 1 74.0 Highly correlated
112 ZNF251 1 94.0 Weakly correlated
113 ZNF430 1 19.6 Weakly correlated
114 ZNF689 1 99.0 Weakly correlated
115 ZNF780A 1 43.0 Weakly correlated
116 ZNF669 1 43.0 Weakly correlated
117 ZNF727 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZFP57 87.0 Weakly correlated
3 ZNF182 99.0 Weakly correlated
4 ZNF287 99.0 Weakly correlated
5 ZNF382 99.0 Weakly correlated
6 ZNF420 94.0 Weakly correlated
7 ZNF425 94.0 Weakly correlated
8 ZNF429 28.9 Weakly correlated
9 ZNF441 43.0 Weakly correlated
10 ZNF445 99.0 Weakly correlated
11 ZNF506 28.9 Weakly correlated
12 ZNF560 43.0 Weakly correlated
13 ZNF680 28.9 Weakly correlated
14 ZNF695 28.9 Weakly correlated
15 ZNF700 28.9 Weakly correlated
16 ZNF792 94.0 Weakly correlated