ZRdb KZFP & Repeats
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SINE_ALUSC5

  • Name
    ALUSC5
  • Repbase
    AluSc5
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000037
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggcgcgtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccagggagtcggaggttgcagtgagccgagatcgcgccactgcactccagcctggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 194 99.0 Weakly correlated
2 ZNF382 175 99.0 Weakly correlated
3 ZNF284 143 43.0 Weakly correlated
4 ZNF2 83 99.0 Weakly correlated
5 ZNF766 60 43.0 Weakly correlated
6 ZFP37 56 99.0 Weakly correlated
7 ZNF101 53 43.0 Weakly correlated
8 ZNF680 52 28.9 Weakly correlated
9 ZNF441 48 43.0 Weakly correlated
10 ZNF18 46 160.0 Weakly correlated
11 ZNF257 43 0.0 Weakly correlated
12 ZNF324 42 99.0 Weakly correlated
13 ZNF558 39 99.0 Weakly correlated
14 ZFP69B 37 99.0 Weakly correlated
15 ZNF140 35 99.0 Weakly correlated
16 ZNF182 33 99.0 Weakly correlated
17 ZNF610 33 28.9 Weakly correlated
18 ZNF705B 30 28.9 Weakly correlated
19 ZNF519 27 19.6 Weakly correlated
20 ZNF589 26 28.9 Weakly correlated
21 ZNF251 25 94.0 Weakly correlated
22 ZKSCAN1 24 160.0 Weakly correlated
23 ZNF506 24 28.9 Weakly correlated
24 ZNF175 22 94.0 Weakly correlated
25 ZNF263 20 180.0 Weakly correlated
26 ZNF792 20 94.0 Weakly correlated
27 ZNF317 18 99.0 Weakly correlated
28 ZIM3 17 87.0 Weakly correlated
29 ZNF479 17 6.4 Weakly correlated
30 ZNF705D 17 28.9 Weakly correlated
31 ZNF823 17 43.0 Weakly correlated
32 ZNF547 16 74.0 Highly correlated
33 ZNF584 16 99.0 Weakly correlated
34 ZKSCAN8 15 160.0 Weakly correlated
35 ZNF534 15 19.6 Weakly correlated
36 ZNF723 14 15.2 Weakly correlated
37 ZNF679 13 28.9 Weakly correlated
38 ZNF695 12 28.9 Weakly correlated
39 ZNF197 11 99.0 Weakly correlated
40 ZNF202 11 160.0 Weakly correlated
41 ZNF641 11 99.0 Weakly correlated
42 ZFP57 10 87.0 Weakly correlated
43 ZNF28 9 28.9 Weakly correlated
44 ZNF460 9 74.0 Highly correlated
45 ZNF486 9 8.6 Weakly correlated
46 ZNF554 9 99.0 Weakly correlated
47 ZNF490 8 43.0 Weakly correlated
48 ZNF585B 8 99.0 Weakly correlated
49 ZNF425 7 94.0 Weakly correlated
50 ZNF597 7 94.0 Weakly correlated
51 ZNF707 7 74.0 Highly correlated
52 ZNF75D 7 94.0 Weakly correlated
53 ZNF92 7 28.9 Weakly correlated
54 ZNF334 6 99.0 Weakly correlated
55 ZNF429 6 28.9 Weakly correlated
56 ZNF445 6 99.0 Weakly correlated
57 ZNF485 6 94.0 Weakly correlated
58 ZNF682 6 28.9 Weakly correlated
59 ZNF84 6 99.0 Weakly correlated
60 ZNF274 5 99.0 Weakly correlated
61 ZNF287 5 99.0 Weakly correlated
62 ZNF585A 5 99.0 Weakly correlated
63 ZNF701 5 28.9 Weakly correlated
64 ZNF8 5 99.0 Weakly correlated
65 ZNF264 4 99.0 Weakly correlated
66 ZNF273 4 28.9 Weakly correlated
67 ZNF320 4 28.9 Weakly correlated
68 ZNF468 4 28.9 Weakly correlated
69 ZNF471 4 94.0 Weakly correlated
70 ZNF528 4 43.0 Weakly correlated
71 ZNF700 4 28.9 Weakly correlated
72 ZNF793 4 99.0 Weakly correlated
73 ZFP69 3 99.0 Weakly correlated
74 ZKSCAN5 3 160.0 Weakly correlated
75 ZNF100 3 28.9 Weakly correlated
76 ZNF135 3 94.0 Weakly correlated
77 ZNF160 3 74.0 Highly correlated
78 ZNF169 3 94.0 Weakly correlated
79 ZNF248 3 99.0 Weakly correlated
80 ZNF331 3 94.0 Weakly correlated
81 ZNF671 3 94.0 Weakly correlated
82 ZNF730 3 19.6 Weakly correlated
83 ZNF789 3 99.0 Weakly correlated
84 ZKSCAN2 2 180.0 Weakly correlated
85 ZNF133 2 99.0 Weakly correlated
86 ZNF141 2 43.0 Weakly correlated
87 ZNF180 2 99.0 Weakly correlated
88 ZNF189 2 99.0 Weakly correlated
89 ZNF26 2 99.0 Weakly correlated
90 ZNF282 2 319.0 Weakly correlated
91 ZNF33A 2 99.0 Weakly correlated
92 ZNF41 2 99.0 Weakly correlated
93 ZNF430 2 19.6 Weakly correlated
94 ZNF43 2 43.0 Weakly correlated
95 ZNF571 2 99.0 Weakly correlated
96 ZNF605 2 99.0 Weakly correlated
97 ZNF616 2 43.0 Weakly correlated
98 ZNF674 2 99.0 Weakly correlated
99 ZNF735 2 28.9 Weakly correlated
100 ZNF778 2 74.0 Highly correlated
101 ZNF780A 2 43.0 Weakly correlated
102 ZNF786 2 99.0 Weakly correlated
103 ZNF879 2 99.0 Weakly correlated
104 RBAK 1 99.0 Weakly correlated
105 ZFP14 1 99.0 Weakly correlated
106 ZFP28 1 99.0 Weakly correlated
107 ZNF10 1 99.0 Weakly correlated
108 ZNF136 1 74.0 Highly correlated
109 ZNF17 1 69.0 Moderately correlated
110 ZNF20 1 43.0 Weakly correlated
111 ZNF212 1 160.0 Weakly correlated
112 ZNF222 1 43.0 Weakly correlated
113 ZNF267 1 43.0 Weakly correlated
114 ZNF304 1 99.0 Weakly correlated
115 ZNF337 1 43.0 Weakly correlated
116 ZNF33B 1 99.0 Weakly correlated
117 ZNF343 1 74.0 Highly correlated
118 ZNF34 1 99.0 Weakly correlated
119 ZNF383 1 99.0 Weakly correlated
120 ZNF440 1 28.9 Weakly correlated
121 ZNF44 1 43.0 Weakly correlated
122 ZNF45 1 99.0 Weakly correlated
123 ZNF480 1 43.0 Weakly correlated
124 ZNF510 1 99.0 Weakly correlated
125 ZNF540 1 87.0 Weakly correlated
126 ZNF543 1 99.0 Weakly correlated
127 ZNF548 1 94.0 Weakly correlated
128 ZNF560 1 43.0 Weakly correlated
129 ZNF562 1 28.9 Weakly correlated
130 ZNF565 1 99.0 Weakly correlated
131 ZNF573 1 94.0 Weakly correlated
132 ZNF596 1 94.0 Weakly correlated
133 ZNF611 1 19.6 Weakly correlated
134 ZNF681 1 28.9 Weakly correlated
135 ZNF75A 1 94.0 Weakly correlated
136 ZNF763 1 15.2 Weakly correlated
137 ZNF765 1 8.6 Weakly correlated
138 ZNF777 1 319.0 Weakly correlated
139 ZNF799 1 43.0 Weakly correlated
140 ZNF81 1 99.0 Weakly correlated
141 ZNF845 1 28.9 Weakly correlated
142 ZNF878 1 43.0 Weakly correlated
143 ZNF880 1 28.9 Weakly correlated
144 ZNF891 1 99.0 Weakly correlated
145 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 139 43.0 Weakly correlated
2 ZNF101 32 43.0 Weakly correlated
3 ZNF257 30 0.0 Weakly correlated
4 ZNF382 28 99.0 Weakly correlated
5 ZNF394 28 99.0 Weakly correlated
6 ZNF519 27 19.6 Weakly correlated
7 ZNF182 26 99.0 Weakly correlated
8 ZNF140 23 99.0 Weakly correlated
9 ZNF441 22 43.0 Weakly correlated
10 ZNF610 17 28.9 Weakly correlated
11 ZFP37 16 99.0 Weakly correlated
12 ZNF506 16 28.9 Weakly correlated
13 ZNF823 15 43.0 Weakly correlated
14 ZNF792 14 94.0 Weakly correlated
15 ZNF18 12 160.0 Weakly correlated
16 ZNF695 8 28.9 Weakly correlated
17 ZNF202 8 160.0 Weakly correlated
18 ZNF460 8 74.0 Highly correlated
19 ZNF641 6 99.0 Weakly correlated
20 ZNF705B 5 28.9 Weakly correlated
21 ZNF334 5 99.0 Weakly correlated
22 ZNF264 4 99.0 Weakly correlated
23 ZIM3 4 87.0 Weakly correlated
24 ZNF425 4 94.0 Weakly correlated
25 ZNF287 4 99.0 Weakly correlated
26 ZNF485 3 94.0 Weakly correlated
27 ZNF680 3 28.9 Weakly correlated
28 ZFP57 3 87.0 Weakly correlated
29 ZNF429 3 28.9 Weakly correlated
30 ZNF445 3 99.0 Weakly correlated
31 ZNF707 2 74.0 Highly correlated
32 ZNF84 2 99.0 Weakly correlated
33 ZNF705D 2 28.9 Weakly correlated
34 ZNF2 2 99.0 Weakly correlated
35 ZNF324 2 99.0 Weakly correlated
36 ZNF534 2 19.6 Weakly correlated
37 ZNF700 2 28.9 Weakly correlated
38 ZNF682 2 28.9 Weakly correlated
39 ZNF251 2 94.0 Weakly correlated
40 ZNF671 2 94.0 Weakly correlated
41 ZNF135 1 94.0 Weakly correlated
42 ZNF343 1 74.0 Highly correlated
43 ZNF100 1 28.9 Weakly correlated
44 ZNF28 1 28.9 Weakly correlated
45 ZFP69 1 99.0 Weakly correlated
46 ZNF616 1 43.0 Weakly correlated
47 ZNF723 1 15.2 Weakly correlated
48 ZFP14 1 99.0 Weakly correlated
49 ZNF585A 1 99.0 Weakly correlated
50 ZNF597 1 94.0 Weakly correlated
51 ZNF8 1 99.0 Weakly correlated
52 ZNF735 1 28.9 Weakly correlated
53 ZNF528 1 43.0 Weakly correlated
54 ZNF596 1 94.0 Weakly correlated
55 ZNF169 1 94.0 Weakly correlated
56 ZNF212 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF382 99.0 Weakly correlated
5 ZNF506 28.9 Weakly correlated
6 ZNF695 28.9 Weakly correlated
7 ZNF792 94.0 Weakly correlated