ZRdb KZFP & Repeats
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SINE_ALUSC

  • Name
    ALUSC
  • Repbase
    AluSc
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000003
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 832 99.0 Weakly correlated
2 ZNF382 804 99.0 Weakly correlated
3 ZNF284 624 43.0 Weakly correlated
4 ZNF2 403 99.0 Weakly correlated
5 ZNF101 283 43.0 Weakly correlated
6 ZFP37 280 99.0 Weakly correlated
7 ZNF441 253 43.0 Weakly correlated
8 ZNF18 245 160.0 Weakly correlated
9 ZNF519 234 19.6 Weakly correlated
10 ZNF558 218 99.0 Weakly correlated
11 ZFP69B 214 99.0 Weakly correlated
12 ZNF324 214 99.0 Weakly correlated
13 ZNF680 210 28.9 Weakly correlated
14 ZNF182 205 99.0 Weakly correlated
15 ZNF766 203 43.0 Weakly correlated
16 ZNF257 171 0.0 Weakly correlated
17 ZNF610 164 28.9 Weakly correlated
18 ZNF705B 153 28.9 Weakly correlated
19 ZNF140 132 99.0 Weakly correlated
20 ZKSCAN1 119 160.0 Weakly correlated
21 ZIM3 118 87.0 Weakly correlated
22 ZNF589 113 28.9 Weakly correlated
23 ZNF175 105 94.0 Weakly correlated
24 ZNF202 101 160.0 Weakly correlated
25 ZNF251 101 94.0 Weakly correlated
26 ZNF506 95 28.9 Weakly correlated
27 ZNF792 91 94.0 Weakly correlated
28 ZNF317 88 99.0 Weakly correlated
29 ZNF263 87 180.0 Weakly correlated
30 ZNF460 85 74.0 Highly correlated
31 ZNF534 85 19.6 Weakly correlated
32 ZNF679 80 28.9 Weakly correlated
33 ZNF823 80 43.0 Weakly correlated
34 ZKSCAN8 77 160.0 Weakly correlated
35 ZNF705D 77 28.9 Weakly correlated
36 ZNF429 75 28.9 Weakly correlated
37 ZNF723 70 15.2 Weakly correlated
38 ZNF479 67 6.4 Weakly correlated
39 ZNF547 66 74.0 Highly correlated
40 ZFP57 60 87.0 Weakly correlated
41 ZNF793 55 99.0 Weakly correlated
42 ZNF695 54 28.9 Weakly correlated
43 ZNF8 52 99.0 Weakly correlated
44 ZNF486 49 8.6 Weakly correlated
45 ZNF92 49 28.9 Weakly correlated
46 ZNF197 47 99.0 Weakly correlated
47 ZNF641 47 99.0 Weakly correlated
48 ZNF584 46 99.0 Weakly correlated
49 ZNF28 44 28.9 Weakly correlated
50 ZNF490 43 43.0 Weakly correlated
51 ZNF264 41 99.0 Weakly correlated
52 ZNF585B 38 99.0 Weakly correlated
53 ZNF554 36 99.0 Weakly correlated
54 ZNF84 35 99.0 Weakly correlated
55 ZNF445 32 99.0 Weakly correlated
56 ZNF485 30 94.0 Weakly correlated
57 ZNF707 30 74.0 Highly correlated
58 ZNF334 28 99.0 Weakly correlated
59 ZNF133 27 99.0 Weakly correlated
60 ZNF701 26 28.9 Weakly correlated
61 ZNF597 25 94.0 Weakly correlated
62 ZNF585A 23 99.0 Weakly correlated
63 ZNF75D 23 94.0 Weakly correlated
64 ZNF287 22 99.0 Weakly correlated
65 ZNF700 22 28.9 Weakly correlated
66 ZNF320 20 28.9 Weakly correlated
67 ZNF528 20 43.0 Weakly correlated
68 ZNF169 19 94.0 Weakly correlated
69 ZNF682 19 28.9 Weakly correlated
70 ZNF248 18 99.0 Weakly correlated
71 ZNF274 18 99.0 Weakly correlated
72 ZNF471 17 94.0 Weakly correlated
73 ZNF549 17 87.0 Weakly correlated
74 ZNF611 16 19.6 Weakly correlated
75 ZNF735 16 28.9 Weakly correlated
76 ZNF778 16 74.0 Highly correlated
77 ZNF671 15 94.0 Weakly correlated
78 ZNF141 14 43.0 Weakly correlated
79 ZNF616 14 43.0 Weakly correlated
80 ZNF786 14 99.0 Weakly correlated
81 ZNF100 13 28.9 Weakly correlated
82 ZNF135 13 94.0 Weakly correlated
83 ZNF136 13 74.0 Highly correlated
84 ZKSCAN5 12 160.0 Weakly correlated
85 ZNF730 12 19.6 Weakly correlated
86 ZFP28 11 99.0 Weakly correlated
87 ZNF160 11 74.0 Highly correlated
88 ZKSCAN2 10 180.0 Weakly correlated
89 ZNF468 10 28.9 Weakly correlated
90 ZNF878 10 43.0 Weakly correlated
91 ZNF189 9 99.0 Weakly correlated
92 ZNF273 9 28.9 Weakly correlated
93 ZNF331 9 94.0 Weakly correlated
94 ZNF605 9 99.0 Weakly correlated
95 ZNF425 8 94.0 Weakly correlated
96 ZNF91 8 6.0 Weakly correlated
97 ZNF677 7 99.0 Weakly correlated
98 ZNF879 7 99.0 Weakly correlated
99 ZNF93 7 8.6 Weakly correlated
100 ZNF12 6 99.0 Weakly correlated
101 ZNF157 6 99.0 Weakly correlated
102 ZNF26 6 99.0 Weakly correlated
103 ZNF436 6 180.0 Weakly correlated
104 ZNF674 6 99.0 Weakly correlated
105 ZNF81 6 99.0 Weakly correlated
106 ZNF211 5 94.0 Weakly correlated
107 ZNF347 5 43.0 Weakly correlated
108 ZNF354A 5 99.0 Weakly correlated
109 ZNF354C 5 99.0 Weakly correlated
110 ZNF816 5 28.9 Weakly correlated
111 ZFP69 4 99.0 Weakly correlated
112 ZNF10 4 99.0 Weakly correlated
113 ZNF222 4 43.0 Weakly correlated
114 ZNF230 4 28.9 Weakly correlated
115 ZNF282 4 319.0 Weakly correlated
116 ZNF304 4 99.0 Weakly correlated
117 ZNF41 4 99.0 Weakly correlated
118 ZNF440 4 28.9 Weakly correlated
119 ZNF44 4 43.0 Weakly correlated
120 ZNF557 4 15.2 Weakly correlated
121 ZNF559 4 74.0 Highly correlated
122 ZNF560 4 43.0 Weakly correlated
123 ZNF583 4 99.0 Weakly correlated
124 ZNF649 4 28.9 Weakly correlated
125 ZNF675 4 8.6 Weakly correlated
126 ZNF789 4 99.0 Weakly correlated
127 ZFP30 3 99.0 Weakly correlated
128 ZNF124 3 43.0 Weakly correlated
129 ZNF33A 3 99.0 Weakly correlated
130 ZNF343 3 74.0 Highly correlated
131 ZNF350 3 99.0 Weakly correlated
132 ZNF561 3 43.0 Weakly correlated
133 ZNF563 3 28.9 Weakly correlated
134 ZNF607 3 43.0 Weakly correlated
135 ZNF705E 3 0.0 Weakly correlated
136 ZNF75A 3 94.0 Weakly correlated
137 ZNF780A 3 43.0 Weakly correlated
138 ZNF845 3 28.9 Weakly correlated
139 ZFP82 2 99.0 Weakly correlated
140 ZIK1 2 87.0 Weakly correlated
141 ZNF154 2 94.0 Weakly correlated
142 ZNF17 2 69.0 Moderately correlated
143 ZNF234 2 99.0 Weakly correlated
144 ZNF283 2 99.0 Weakly correlated
145 ZNF286A 2 160.0 Weakly correlated
146 ZNF302 2 43.0 Weakly correlated
147 ZNF337 2 43.0 Weakly correlated
148 ZNF418 2 43.0 Weakly correlated
149 ZNF420 2 94.0 Weakly correlated
150 ZNF430 2 19.6 Weakly correlated
151 ZNF433 2 43.0 Weakly correlated
152 ZNF43 2 43.0 Weakly correlated
153 ZNF461 2 99.0 Weakly correlated
154 ZNF480 2 43.0 Weakly correlated
155 ZNF510 2 99.0 Weakly correlated
156 ZNF514 2 94.0 Weakly correlated
157 ZNF543 2 99.0 Weakly correlated
158 ZNF562 2 28.9 Weakly correlated
159 ZNF567 2 99.0 Weakly correlated
160 ZNF586 2 43.0 Weakly correlated
161 ZNF587 2 28.9 Weakly correlated
162 ZNF596 2 94.0 Weakly correlated
163 ZNF613 2 99.0 Weakly correlated
164 ZNF681 2 28.9 Weakly correlated
165 ZNF718 2 19.6 Weakly correlated
166 ZNF736 2 43.0 Weakly correlated
167 ZNF747 2 43.0 Weakly correlated
168 ZNF765 2 8.6 Weakly correlated
169 ZNF808 2 19.6 Weakly correlated
170 ZNF880 2 28.9 Weakly correlated
171 ZFP14 1 99.0 Weakly correlated
172 ZNF132 1 94.0 Weakly correlated
173 ZNF177 1 94.0 Weakly correlated
174 ZNF180 1 99.0 Weakly correlated
175 ZNF19 1 99.0 Weakly correlated
176 ZNF205 1 180.0 Weakly correlated
177 ZNF214 1 99.0 Weakly correlated
178 ZNF224 1 69.0 Moderately correlated
179 ZNF225 1 74.0 Highly correlated
180 ZNF250 1 99.0 Weakly correlated
181 ZNF267 1 43.0 Weakly correlated
182 ZNF285 1 94.0 Weakly correlated
183 ZNF30 1 94.0 Weakly correlated
184 ZNF333 1 99.0 Weakly correlated
185 ZNF34 1 99.0 Weakly correlated
186 ZNF454 1 99.0 Weakly correlated
187 ZNF483 1 99.0 Weakly correlated
188 ZNF500 1 160.0 Weakly correlated
189 ZNF527 1 99.0 Weakly correlated
190 ZNF530 1 28.9 Weakly correlated
191 ZNF548 1 94.0 Weakly correlated
192 ZNF555 1 94.0 Weakly correlated
193 ZNF565 1 99.0 Weakly correlated
194 ZNF568 1 99.0 Weakly correlated
195 ZNF571 1 99.0 Weakly correlated
196 ZNF573 1 94.0 Weakly correlated
197 ZNF582 1 99.0 Weakly correlated
198 ZNF627 1 74.0 Highly correlated
199 ZNF699 1 99.0 Weakly correlated
200 ZNF716 1 19.6 Weakly correlated
201 ZNF727 1 19.6 Weakly correlated
202 ZNF74 1 99.0 Weakly correlated
203 ZNF772 1 94.0 Weakly correlated
204 ZNF777 1 319.0 Weakly correlated
205 ZNF77 1 87.0 Weakly correlated
206 ZNF846 1 74.0 Highly correlated
207 ZNF85 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 568 43.0 Weakly correlated
2 ZNF519 212 19.6 Weakly correlated
3 ZNF441 201 43.0 Weakly correlated
4 ZNF101 184 43.0 Weakly correlated
5 ZNF182 180 99.0 Weakly correlated
6 ZNF394 122 99.0 Weakly correlated
7 ZNF257 108 0.0 Weakly correlated
8 ZNF140 103 99.0 Weakly correlated
9 ZNF382 102 99.0 Weakly correlated
10 ZNF460 79 74.0 Highly correlated
11 ZNF202 79 160.0 Weakly correlated
12 ZNF18 78 160.0 Weakly correlated
13 ZNF610 76 28.9 Weakly correlated
14 ZNF506 72 28.9 Weakly correlated
15 ZFP37 69 99.0 Weakly correlated
16 ZNF823 64 43.0 Weakly correlated
17 ZNF792 59 94.0 Weakly correlated
18 ZNF429 57 28.9 Weakly correlated
19 ZNF695 31 28.9 Weakly correlated
20 ZNF264 31 99.0 Weakly correlated
21 ZNF641 27 99.0 Weakly correlated
22 ZNF534 24 19.6 Weakly correlated
23 ZNF445 24 99.0 Weakly correlated
24 ZNF334 20 99.0 Weakly correlated
25 ZIM3 20 87.0 Weakly correlated
26 ZNF287 17 99.0 Weakly correlated
27 ZNF324 13 99.0 Weakly correlated
28 ZNF705B 12 28.9 Weakly correlated
29 ZNF705D 11 28.9 Weakly correlated
30 ZNF558 10 99.0 Weakly correlated
31 ZNF616 10 43.0 Weakly correlated
32 ZNF2 9 99.0 Weakly correlated
33 ZNF766 8 43.0 Weakly correlated
34 ZNF554 7 99.0 Weakly correlated
35 ZNF485 7 94.0 Weakly correlated
36 ZNF786 7 99.0 Weakly correlated
37 ZNF135 7 94.0 Weakly correlated
38 ZFP57 7 87.0 Weakly correlated
39 ZNF680 6 28.9 Weakly correlated
40 ZNF707 6 74.0 Highly correlated
41 ZNF723 5 15.2 Weakly correlated
42 ZNF141 4 43.0 Weakly correlated
43 ZNF28 4 28.9 Weakly correlated
44 ZNF793 4 99.0 Weakly correlated
45 ZNF91 3 6.0 Weakly correlated
46 ZNF585A 3 99.0 Weakly correlated
47 ZNF251 3 94.0 Weakly correlated
48 ZNF671 3 94.0 Weakly correlated
49 ZNF597 3 94.0 Weakly correlated
50 ZNF8 3 99.0 Weakly correlated
51 ZNF263 2 180.0 Weakly correlated
52 ZNF169 2 94.0 Weakly correlated
53 ZKSCAN1 2 160.0 Weakly correlated
54 ZNF700 2 28.9 Weakly correlated
55 ZNF596 2 94.0 Weakly correlated
56 ZNF468 2 28.9 Weakly correlated
57 ZNF549 1 87.0 Weakly correlated
58 ZNF585B 1 99.0 Weakly correlated
59 ZNF222 1 43.0 Weakly correlated
60 ZNF701 1 28.9 Weakly correlated
61 ZNF12 1 99.0 Weakly correlated
62 ZKSCAN5 1 160.0 Weakly correlated
63 ZNF75D 1 94.0 Weakly correlated
64 ZFP69B 1 99.0 Weakly correlated
65 ZNF789 1 99.0 Weakly correlated
66 ZNF317 1 99.0 Weakly correlated
67 ZNF555 1 94.0 Weakly correlated
68 ZNF674 1 99.0 Weakly correlated
69 ZNF677 1 99.0 Weakly correlated
70 ZNF880 1 28.9 Weakly correlated
71 ZFP28 1 99.0 Weakly correlated
72 ZNF440 1 28.9 Weakly correlated
73 ZNF461 1 99.0 Weakly correlated
74 ZNF772 1 94.0 Weakly correlated
75 ZNF175 1 94.0 Weakly correlated
76 ZNF273 1 28.9 Weakly correlated
77 ZNF354C 1 99.0 Weakly correlated
78 ZNF479 1 6.4 Weakly correlated
79 ZNF343 1 74.0 Highly correlated
80 ZNF44 1 43.0 Weakly correlated
81 ZNF471 1 94.0 Weakly correlated
82 ZNF486 1 8.6 Weakly correlated
83 ZNF514 1 94.0 Weakly correlated
84 ZNF765 1 8.6 Weakly correlated
85 ZNF879 1 99.0 Weakly correlated
86 ZNF225 1 74.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZFP57 87.0 Weakly correlated
3 ZNF182 99.0 Weakly correlated
4 ZNF18 160.0 Weakly correlated
5 ZNF287 99.0 Weakly correlated
6 ZNF324 99.0 Weakly correlated
7 ZNF382 99.0 Weakly correlated
8 ZNF429 28.9 Weakly correlated
9 ZNF445 99.0 Weakly correlated
10 ZNF506 28.9 Weakly correlated
11 ZNF554 99.0 Weakly correlated
12 ZNF680 28.9 Weakly correlated
13 ZNF695 28.9 Weakly correlated
14 ZNF792 94.0 Weakly correlated