ZRdb KZFP & Repeats
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SINE_ALUJR4

  • Name
    ALUJR4
  • Repbase
    AluJr4
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000036
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggaggatcgcttgaggccaggagttcgagaccagcctgggcaacatagcgagaccccgtctctacaaaaaatttaaaaattagccgggcgtggtggcgcgcgcctgtagtcctagctactcgggaggctgaggcaggaggatcgcttgagcccaggagttcgaggttacagtgagctatgatcgcgccactgcactccagcctgggcgacagagcgagaccctgtctcnaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 747 99.0 Weakly correlated
2 ZNF284 392 43.0 Weakly correlated
3 ZNF394 300 99.0 Weakly correlated
4 ZNF263 286 180.0 Weakly correlated
5 ZNF705B 164 28.9 Weakly correlated
6 ZNF766 154 43.0 Weakly correlated
7 ZFP37 140 99.0 Weakly correlated
8 ZNF2 135 99.0 Weakly correlated
9 ZNF18 134 160.0 Weakly correlated
10 ZNF257 126 0.0 Weakly correlated
11 ZNF680 104 28.9 Weakly correlated
12 ZNF101 95 43.0 Weakly correlated
13 ZNF506 95 28.9 Weakly correlated
14 ZNF324 88 99.0 Weakly correlated
15 ZIM3 82 87.0 Weakly correlated
16 ZNF705D 81 28.9 Weakly correlated
17 ZNF479 80 6.4 Weakly correlated
18 ZKSCAN1 78 160.0 Weakly correlated
19 ZFP69B 77 99.0 Weakly correlated
20 ZNF558 77 99.0 Weakly correlated
21 ZNF554 66 99.0 Weakly correlated
22 ZNF317 64 99.0 Weakly correlated
23 ZNF175 61 94.0 Weakly correlated
24 ZNF589 61 28.9 Weakly correlated
25 ZNF534 52 19.6 Weakly correlated
26 ZNF274 50 99.0 Weakly correlated
27 ZNF182 49 99.0 Weakly correlated
28 ZNF140 47 99.0 Weakly correlated
29 ZNF251 46 94.0 Weakly correlated
30 ZKSCAN8 45 160.0 Weakly correlated
31 ZNF519 45 19.6 Weakly correlated
32 ZNF610 44 28.9 Weakly correlated
33 ZNF723 34 15.2 Weakly correlated
34 ZNF679 33 28.9 Weakly correlated
35 ZNF197 30 99.0 Weakly correlated
36 ZNF584 29 99.0 Weakly correlated
37 ZNF92 28 28.9 Weakly correlated
38 ZNF441 25 43.0 Weakly correlated
39 ZNF786 25 99.0 Weakly correlated
40 ZNF585B 24 99.0 Weakly correlated
41 ZNF8 24 99.0 Weakly correlated
42 ZNF793 22 99.0 Weakly correlated
43 ZNF701 21 28.9 Weakly correlated
44 ZNF75D 20 94.0 Weakly correlated
45 ZNF169 18 94.0 Weakly correlated
46 ZFP57 17 87.0 Weakly correlated
47 ZNF490 17 43.0 Weakly correlated
48 ZNF792 17 94.0 Weakly correlated
49 ZNF135 15 94.0 Weakly correlated
50 ZNF273 15 28.9 Weakly correlated
51 ZNF547 15 74.0 Highly correlated
52 ZFP28 14 99.0 Weakly correlated
53 ZNF320 14 28.9 Weakly correlated
54 ZNF202 13 160.0 Weakly correlated
55 ZNF429 13 28.9 Weakly correlated
56 ZNF485 13 94.0 Weakly correlated
57 ZNF641 13 99.0 Weakly correlated
58 ZNF160 12 74.0 Highly correlated
59 ZNF264 12 99.0 Weakly correlated
60 ZNF549 12 87.0 Weakly correlated
61 ZNF26 11 99.0 Weakly correlated
62 ZNF28 11 28.9 Weakly correlated
63 ZNF585A 11 99.0 Weakly correlated
64 ZNF136 10 74.0 Highly correlated
65 ZNF674 10 99.0 Weakly correlated
66 ZNF695 10 28.9 Weakly correlated
67 ZNF331 9 94.0 Weakly correlated
68 ZNF528 9 43.0 Weakly correlated
69 ZNF597 9 94.0 Weakly correlated
70 ZNF133 8 99.0 Weakly correlated
71 ZNF468 8 28.9 Weakly correlated
72 ZNF471 8 94.0 Weakly correlated
73 ZFP69 7 99.0 Weakly correlated
74 ZNF211 7 94.0 Weakly correlated
75 ZNF224 7 69.0 Moderately correlated
76 ZNF248 7 99.0 Weakly correlated
77 ZNF334 7 99.0 Weakly correlated
78 ZNF778 7 74.0 Highly correlated
79 ZKSCAN5 6 160.0 Weakly correlated
80 ZNF287 6 99.0 Weakly correlated
81 ZNF425 6 94.0 Weakly correlated
82 ZNF486 6 8.6 Weakly correlated
83 ZNF84 6 99.0 Weakly correlated
84 ZFP30 5 99.0 Weakly correlated
85 ZNF222 5 43.0 Weakly correlated
86 ZNF30 5 94.0 Weakly correlated
87 ZNF440 5 28.9 Weakly correlated
88 ZNF707 5 74.0 Highly correlated
89 ZNF735 5 28.9 Weakly correlated
90 ZNF12 4 99.0 Weakly correlated
91 ZNF17 4 69.0 Moderately correlated
92 ZNF354A 4 99.0 Weakly correlated
93 ZNF567 4 99.0 Weakly correlated
94 ZNF605 4 99.0 Weakly correlated
95 ZNF667 4 99.0 Weakly correlated
96 ZNF671 4 94.0 Weakly correlated
97 ZNF730 4 19.6 Weakly correlated
98 ZNF765 4 8.6 Weakly correlated
99 ZNF780A 4 43.0 Weakly correlated
100 ZNF85 4 28.9 Weakly correlated
101 ZFP90 3 99.0 Weakly correlated
102 ZNF10 3 99.0 Weakly correlated
103 ZNF41 3 99.0 Weakly correlated
104 ZNF436 3 180.0 Weakly correlated
105 ZNF483 3 99.0 Weakly correlated
106 ZNF616 3 43.0 Weakly correlated
107 ZNF658 3 99.0 Weakly correlated
108 ZNF675 3 8.6 Weakly correlated
109 ZNF684 3 99.0 Weakly correlated
110 ZNF727 3 19.6 Weakly correlated
111 ZNF789 3 99.0 Weakly correlated
112 ZNF879 3 99.0 Weakly correlated
113 ZNF93 3 8.6 Weakly correlated
114 ZIK1 2 87.0 Weakly correlated
115 ZNF141 2 43.0 Weakly correlated
116 ZNF189 2 99.0 Weakly correlated
117 ZNF230 2 28.9 Weakly correlated
118 ZNF304 2 99.0 Weakly correlated
119 ZNF33A 2 99.0 Weakly correlated
120 ZNF347 2 43.0 Weakly correlated
121 ZNF350 2 99.0 Weakly correlated
122 ZNF417 2 28.9 Weakly correlated
123 ZNF43 2 43.0 Weakly correlated
124 ZNF484 2 99.0 Weakly correlated
125 ZNF530 2 28.9 Weakly correlated
126 ZNF560 2 43.0 Weakly correlated
127 ZNF563 2 28.9 Weakly correlated
128 ZNF611 2 19.6 Weakly correlated
129 ZNF627 2 74.0 Highly correlated
130 ZNF677 2 99.0 Weakly correlated
131 ZNF689 2 99.0 Weakly correlated
132 ZNF700 2 28.9 Weakly correlated
133 PRDM9 1 0.0 Weakly correlated
134 RBAK 1 99.0 Weakly correlated
135 ZFP82 1 99.0 Weakly correlated
136 ZKSCAN2 1 180.0 Weakly correlated
137 ZNF114 1 28.9 Weakly correlated
138 ZNF124 1 43.0 Weakly correlated
139 ZNF154 1 94.0 Weakly correlated
140 ZNF157 1 99.0 Weakly correlated
141 ZNF225 1 74.0 Highly correlated
142 ZNF253 1 19.6 Weakly correlated
143 ZNF282 1 319.0 Weakly correlated
144 ZNF324B 1 99.0 Weakly correlated
145 ZNF337 1 43.0 Weakly correlated
146 ZNF33B 1 99.0 Weakly correlated
147 ZNF343 1 74.0 Highly correlated
148 ZNF34 1 99.0 Weakly correlated
149 ZNF383 1 99.0 Weakly correlated
150 ZNF418 1 43.0 Weakly correlated
151 ZNF433 1 43.0 Weakly correlated
152 ZNF445 1 99.0 Weakly correlated
153 ZNF460 1 74.0 Highly correlated
154 ZNF470 1 99.0 Weakly correlated
155 ZNF543 1 99.0 Weakly correlated
156 ZNF555 1 94.0 Weakly correlated
157 ZNF557 1 15.2 Weakly correlated
158 ZNF568 1 99.0 Weakly correlated
159 ZNF573 1 94.0 Weakly correlated
160 ZNF583 1 99.0 Weakly correlated
161 ZNF586 1 43.0 Weakly correlated
162 ZNF596 1 94.0 Weakly correlated
163 ZNF630 1 94.0 Weakly correlated
164 ZNF705E 1 0.0 Weakly correlated
165 ZNF716 1 19.6 Weakly correlated
166 ZNF75A 1 94.0 Weakly correlated
167 ZNF761 1 19.6 Weakly correlated
168 ZNF777 1 319.0 Weakly correlated
169 ZNF77 1 87.0 Weakly correlated
170 ZNF791 1 87.0 Weakly correlated
171 ZNF799 1 43.0 Weakly correlated
172 ZNF7 1 99.0 Weakly correlated
173 ZNF805 1 99.0 Weakly correlated
174 ZNF808 1 19.6 Weakly correlated
175 ZNF813 1 28.9 Weakly correlated
176 ZNF816 1 28.9 Weakly correlated
177 ZNF823 1 43.0 Weakly correlated
178 ZNF878 1 43.0 Weakly correlated
179 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 354 43.0 Weakly correlated
2 ZNF263 121 180.0 Weakly correlated
3 ZNF257 94 0.0 Weakly correlated
4 ZNF506 72 28.9 Weakly correlated
5 ZNF479 42 6.4 Weakly correlated
6 ZNF18 42 160.0 Weakly correlated
7 ZNF182 40 99.0 Weakly correlated
8 ZNF101 37 43.0 Weakly correlated
9 ZNF140 26 99.0 Weakly correlated
10 ZNF519 25 19.6 Weakly correlated
11 ZIM3 23 87.0 Weakly correlated
12 ZNF705B 22 28.9 Weakly correlated
13 ZNF394 22 99.0 Weakly correlated
14 ZNF786 20 99.0 Weakly correlated
15 ZNF324 19 99.0 Weakly correlated
16 ZNF382 18 99.0 Weakly correlated
17 ZNF705D 16 28.9 Weakly correlated
18 ZNF135 14 94.0 Weakly correlated
19 ZFP37 14 99.0 Weakly correlated
20 ZNF610 13 28.9 Weakly correlated
21 ZNF441 12 43.0 Weakly correlated
22 ZNF554 12 99.0 Weakly correlated
23 ZNF534 11 19.6 Weakly correlated
24 ZNF641 7 99.0 Weakly correlated
25 ZNF792 7 94.0 Weakly correlated
26 ZNF680 7 28.9 Weakly correlated
27 ZNF723 6 15.2 Weakly correlated
28 ZNF202 6 160.0 Weakly correlated
29 ZNF169 6 94.0 Weakly correlated
30 ZNF264 5 99.0 Weakly correlated
31 ZNF695 5 28.9 Weakly correlated
32 ZNF429 4 28.9 Weakly correlated
33 ZNF287 4 99.0 Weakly correlated
34 ZNF334 4 99.0 Weakly correlated
35 ZNF547 4 74.0 Highly correlated
36 ZNF674 4 99.0 Weakly correlated
37 ZNF558 3 99.0 Weakly correlated
38 ZNF616 3 43.0 Weakly correlated
39 ZNF780A 3 43.0 Weakly correlated
40 ZFP57 3 87.0 Weakly correlated
41 ZNF778 3 74.0 Highly correlated
42 ZKSCAN5 3 160.0 Weakly correlated
43 ZNF75D 2 94.0 Weakly correlated
44 ZNF331 2 94.0 Weakly correlated
45 ZNF273 2 28.9 Weakly correlated
46 ZNF589 2 28.9 Weakly correlated
47 ZNF417 2 28.9 Weakly correlated
48 ZNF483 2 99.0 Weakly correlated
49 ZNF684 2 99.0 Weakly correlated
50 ZNF468 2 28.9 Weakly correlated
51 ZNF28 2 28.9 Weakly correlated
52 ZNF317 2 99.0 Weakly correlated
53 ZNF679 2 28.9 Weakly correlated
54 ZKSCAN1 2 160.0 Weakly correlated
55 ZFP69B 2 99.0 Weakly correlated
56 ZNF440 2 28.9 Weakly correlated
57 ZNF701 2 28.9 Weakly correlated
58 ZNF735 2 28.9 Weakly correlated
59 ZNF585A 2 99.0 Weakly correlated
60 ZNF789 2 99.0 Weakly correlated
61 ZNF793 2 99.0 Weakly correlated
62 ZFP90 2 99.0 Weakly correlated
63 ZNF26 2 99.0 Weakly correlated
64 ZNF136 1 74.0 Highly correlated
65 ZIK1 1 87.0 Weakly correlated
66 ZNF141 1 43.0 Weakly correlated
67 ZNF12 1 99.0 Weakly correlated
68 ZNF675 1 8.6 Weakly correlated
69 ZNF677 1 99.0 Weakly correlated
70 ZNF567 1 99.0 Weakly correlated
71 ZNF879 1 99.0 Weakly correlated
72 ZNF425 1 94.0 Weakly correlated
73 ZNF485 1 94.0 Weakly correlated
74 ZFP28 1 99.0 Weakly correlated
75 ZNF667 1 99.0 Weakly correlated
76 ZNF445 1 99.0 Weakly correlated
77 ZNF549 1 87.0 Weakly correlated
78 ZNF707 1 74.0 Highly correlated
79 ZNF585B 1 99.0 Weakly correlated
80 ZNF471 1 94.0 Weakly correlated
81 ZNF92 1 28.9 Weakly correlated
82 ZNF320 1 28.9 Weakly correlated
83 ZNF2 1 99.0 Weakly correlated
84 ZNF251 1 94.0 Weakly correlated
85 ZNF8 1 99.0 Weakly correlated
86 ZNF347 1 43.0 Weakly correlated
87 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF441 43.0 Weakly correlated
6 ZNF506 28.9 Weakly correlated
7 ZNF554 99.0 Weakly correlated
8 ZNF792 94.0 Weakly correlated