ZRdb KZFP & Repeats
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SINE_ALUJR

  • Name
    ALUJR
  • Repbase
    AluJr
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000035
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggaggatcgcttgaggccaggagttcgagaccagcctgggcaacatagcgagaccccgtctctacaaaaaatataaaaattagccgggcgtggtggcgcgcgcctgtagtcccagctactcgggaggctgaggcgggaggatcgcttgagcccaggagntcgaggctgcagtgagctatgatcgcgccactgcactccagcctgggcgacagagcgagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 2897 99.0 Weakly correlated
2 ZNF284 1993 43.0 Weakly correlated
3 ZNF394 1788 99.0 Weakly correlated
4 ZNF263 1677 180.0 Weakly correlated
5 ZNF2 819 99.0 Weakly correlated
6 ZNF766 770 43.0 Weakly correlated
7 ZNF18 750 160.0 Weakly correlated
8 ZFP37 739 99.0 Weakly correlated
9 ZNF705B 697 28.9 Weakly correlated
10 ZNF101 593 43.0 Weakly correlated
11 ZNF680 529 28.9 Weakly correlated
12 ZNF257 519 0.0 Weakly correlated
13 ZFP69B 479 99.0 Weakly correlated
14 ZNF324 454 99.0 Weakly correlated
15 ZKSCAN1 427 160.0 Weakly correlated
16 ZNF506 416 28.9 Weakly correlated
17 ZNF479 411 6.4 Weakly correlated
18 ZNF558 399 99.0 Weakly correlated
19 ZNF705D 375 28.9 Weakly correlated
20 ZNF589 360 28.9 Weakly correlated
21 ZIM3 334 87.0 Weakly correlated
22 ZNF175 311 94.0 Weakly correlated
23 ZNF610 293 28.9 Weakly correlated
24 ZKSCAN8 260 160.0 Weakly correlated
25 ZNF317 260 99.0 Weakly correlated
26 ZNF140 235 99.0 Weakly correlated
27 ZNF554 234 99.0 Weakly correlated
28 ZNF534 221 19.6 Weakly correlated
29 ZNF197 203 99.0 Weakly correlated
30 ZNF584 196 99.0 Weakly correlated
31 ZNF182 192 99.0 Weakly correlated
32 ZNF135 162 94.0 Weakly correlated
33 ZNF251 154 94.0 Weakly correlated
34 ZNF792 151 94.0 Weakly correlated
35 ZNF679 150 28.9 Weakly correlated
36 ZNF723 147 15.2 Weakly correlated
37 ZNF519 140 19.6 Weakly correlated
38 ZNF92 135 28.9 Weakly correlated
39 ZNF274 124 99.0 Weakly correlated
40 ZNF786 123 99.0 Weakly correlated
41 ZNF793 117 99.0 Weakly correlated
42 ZNF441 113 43.0 Weakly correlated
43 ZNF701 107 28.9 Weakly correlated
44 ZNF547 105 74.0 Highly correlated
45 ZNF8 97 99.0 Weakly correlated
46 ZNF28 84 28.9 Weakly correlated
47 ZNF528 83 43.0 Weakly correlated
48 ZNF429 81 28.9 Weakly correlated
49 ZNF264 80 99.0 Weakly correlated
50 ZNF695 80 28.9 Weakly correlated
51 ZNF202 76 160.0 Weakly correlated
52 ZNF585B 76 99.0 Weakly correlated
53 ZNF75D 76 94.0 Weakly correlated
54 ZNF641 75 99.0 Weakly correlated
55 ZNF597 71 94.0 Weakly correlated
56 ZFP57 69 87.0 Weakly correlated
57 ZNF486 68 8.6 Weakly correlated
58 ZNF485 65 94.0 Weakly correlated
59 ZNF490 65 43.0 Weakly correlated
60 ZNF585A 65 99.0 Weakly correlated
61 ZNF707 59 74.0 Highly correlated
62 ZNF133 53 99.0 Weakly correlated
63 ZNF287 52 99.0 Weakly correlated
64 ZNF273 51 28.9 Weakly correlated
65 ZFP28 48 99.0 Weakly correlated
66 ZNF320 45 28.9 Weakly correlated
67 ZNF674 45 99.0 Weakly correlated
68 ZNF460 39 74.0 Highly correlated
69 ZNF136 38 74.0 Highly correlated
70 ZNF141 38 43.0 Weakly correlated
71 ZNF331 37 94.0 Weakly correlated
72 ZNF334 37 99.0 Weakly correlated
73 ZKSCAN5 35 160.0 Weakly correlated
74 ZNF549 35 87.0 Weakly correlated
75 ZNF425 34 94.0 Weakly correlated
76 ZNF169 32 94.0 Weakly correlated
77 ZNF84 32 99.0 Weakly correlated
78 ZNF282 31 319.0 Weakly correlated
79 ZNF778 31 74.0 Highly correlated
80 ZNF471 30 94.0 Weakly correlated
81 ZNF735 30 28.9 Weakly correlated
82 ZNF436 26 180.0 Weakly correlated
83 ZNF248 25 99.0 Weakly correlated
84 ZNF682 25 28.9 Weakly correlated
85 ZNF730 25 19.6 Weakly correlated
86 ZNF189 24 99.0 Weakly correlated
87 ZNF468 24 28.9 Weakly correlated
88 ZNF573 24 94.0 Weakly correlated
89 ZNF30 22 94.0 Weakly correlated
90 ZNF354A 21 99.0 Weakly correlated
91 ZNF33A 20 99.0 Weakly correlated
92 ZNF41 20 99.0 Weakly correlated
93 ZNF605 20 99.0 Weakly correlated
94 ZNF671 20 94.0 Weakly correlated
95 ZNF675 19 8.6 Weakly correlated
96 ZNF616 18 43.0 Weakly correlated
97 ZNF823 18 43.0 Weakly correlated
98 ZNF160 17 74.0 Highly correlated
99 ZNF224 17 69.0 Moderately correlated
100 ZNF17 16 69.0 Moderately correlated
101 ZNF26 16 99.0 Weakly correlated
102 ZNF563 16 28.9 Weakly correlated
103 ZNF677 16 99.0 Weakly correlated
104 ZNF440 15 28.9 Weakly correlated
105 ZNF560 14 43.0 Weakly correlated
106 ZNF780A 14 43.0 Weakly correlated
107 ZNF879 14 99.0 Weakly correlated
108 ZNF91 14 6.0 Weakly correlated
109 ZNF211 13 94.0 Weakly correlated
110 ZNF230 13 28.9 Weakly correlated
111 ZNF347 13 43.0 Weakly correlated
112 ZNF567 13 99.0 Weakly correlated
113 ZNF350 12 99.0 Weakly correlated
114 ZNF100 11 28.9 Weakly correlated
115 ZNF10 11 99.0 Weakly correlated
116 ZNF765 11 8.6 Weakly correlated
117 ZNF845 11 28.9 Weakly correlated
118 ZNF878 11 43.0 Weakly correlated
119 ZFP69 10 99.0 Weakly correlated
120 ZFP90 10 99.0 Weakly correlated
121 ZNF12 10 99.0 Weakly correlated
122 ZNF157 10 99.0 Weakly correlated
123 ZNF433 10 43.0 Weakly correlated
124 ZNF583 10 99.0 Weakly correlated
125 ZFP30 9 99.0 Weakly correlated
126 ZIK1 9 87.0 Weakly correlated
127 ZNF418 9 43.0 Weakly correlated
128 ZNF44 9 43.0 Weakly correlated
129 ZNF611 9 19.6 Weakly correlated
130 ZNF304 8 99.0 Weakly correlated
131 ZNF483 8 99.0 Weakly correlated
132 ZNF816 8 28.9 Weakly correlated
133 ZNF93 8 8.6 Weakly correlated
134 ZNF283 7 99.0 Weakly correlated
135 ZNF343 7 74.0 Highly correlated
136 ZNF383 7 99.0 Weakly correlated
137 ZNF559 7 74.0 Highly correlated
138 ZNF716 7 19.6 Weakly correlated
139 ZNF354C 6 99.0 Weakly correlated
140 ZNF586 6 43.0 Weakly correlated
141 ZNF700 6 28.9 Weakly correlated
142 ZNF75A 6 94.0 Weakly correlated
143 ZNF808 6 19.6 Weakly correlated
144 ZNF124 5 43.0 Weakly correlated
145 ZNF333 5 99.0 Weakly correlated
146 ZNF454 5 99.0 Weakly correlated
147 ZNF500 5 160.0 Weakly correlated
148 ZNF557 5 15.2 Weakly correlated
149 ZNF566 5 99.0 Weakly correlated
150 ZNF587 5 28.9 Weakly correlated
151 ZNF596 5 94.0 Weakly correlated
152 ZNF613 5 99.0 Weakly correlated
153 ZNF627 5 74.0 Highly correlated
154 ZNF681 5 28.9 Weakly correlated
155 ZNF789 5 99.0 Weakly correlated
156 ZNF81 5 99.0 Weakly correlated
157 ZFP82 4 99.0 Weakly correlated
158 ZKSCAN2 4 180.0 Weakly correlated
159 ZNF180 4 99.0 Weakly correlated
160 ZNF222 4 43.0 Weakly correlated
161 ZNF420 4 94.0 Weakly correlated
162 ZNF43 4 43.0 Weakly correlated
163 ZNF445 4 99.0 Weakly correlated
164 ZNF510 4 99.0 Weakly correlated
165 ZNF530 4 28.9 Weakly correlated
166 ZNF568 4 99.0 Weakly correlated
167 ZNF630 4 94.0 Weakly correlated
168 ZNF718 4 19.6 Weakly correlated
169 ZNF749 4 28.9 Weakly correlated
170 ZNF777 4 319.0 Weakly correlated
171 ZNF77 4 87.0 Weakly correlated
172 ZNF799 4 43.0 Weakly correlated
173 ZNF7 4 99.0 Weakly correlated
174 ZNF85 4 28.9 Weakly correlated
175 ZNF184 3 99.0 Weakly correlated
176 ZNF225 3 74.0 Highly correlated
177 ZNF234 3 99.0 Weakly correlated
178 ZNF514 3 94.0 Weakly correlated
179 ZNF571 3 99.0 Weakly correlated
180 ZNF582 3 99.0 Weakly correlated
181 ZNF727 3 19.6 Weakly correlated
182 ZNF763 3 15.2 Weakly correlated
183 ZNF805 3 99.0 Weakly correlated
184 PRDM9 2 0.0 Weakly correlated
185 RBAK 2 99.0 Weakly correlated
186 ZFP14 2 99.0 Weakly correlated
187 ZKSCAN3 2 99.0 Weakly correlated
188 ZNF132 2 94.0 Weakly correlated
189 ZNF253 2 19.6 Weakly correlated
190 ZNF267 2 43.0 Weakly correlated
191 ZNF286A 2 160.0 Weakly correlated
192 ZNF337 2 43.0 Weakly correlated
193 ZNF37A 2 99.0 Weakly correlated
194 ZNF417 2 28.9 Weakly correlated
195 ZNF419 2 28.9 Weakly correlated
196 ZNF439 2 8.6 Weakly correlated
197 ZNF480 2 43.0 Weakly correlated
198 ZNF484 2 99.0 Weakly correlated
199 ZNF543 2 99.0 Weakly correlated
200 ZNF544 2 0.0 Weakly correlated
201 ZNF569 2 99.0 Weakly correlated
202 ZNF587B 2 8.6 Weakly correlated
203 ZNF658 2 99.0 Weakly correlated
204 ZNF667 2 99.0 Weakly correlated
205 ZNF669 2 43.0 Weakly correlated
206 ZNF684 2 99.0 Weakly correlated
207 ZNF736 2 43.0 Weakly correlated
208 ZNF74 2 99.0 Weakly correlated
209 ZNF776 2 43.0 Weakly correlated
210 ZNF814 2 0.0 Weakly correlated
211 ZNF850 2 28.9 Weakly correlated
212 ZNF177 1 94.0 Weakly correlated
213 ZNF181 1 94.0 Weakly correlated
214 ZNF19 1 99.0 Weakly correlated
215 ZNF205 1 180.0 Weakly correlated
216 ZNF214 1 99.0 Weakly correlated
217 ZNF215 1 99.0 Weakly correlated
218 ZNF250 1 99.0 Weakly correlated
219 ZNF254 1 43.0 Weakly correlated
220 ZNF302 1 43.0 Weakly correlated
221 ZNF33B 1 99.0 Weakly correlated
222 ZNF3 1 160.0 Weakly correlated
223 ZNF416 1 43.0 Weakly correlated
224 ZNF431 1 28.9 Weakly correlated
225 ZNF432 1 99.0 Weakly correlated
226 ZNF45 1 99.0 Weakly correlated
227 ZNF461 1 99.0 Weakly correlated
228 ZNF496 1 99.0 Weakly correlated
229 ZNF548 1 94.0 Weakly correlated
230 ZNF550 1 94.0 Weakly correlated
231 ZNF551 1 94.0 Weakly correlated
232 ZNF555 1 94.0 Weakly correlated
233 ZNF561 1 43.0 Weakly correlated
234 ZNF562 1 28.9 Weakly correlated
235 ZNF564 1 74.0 Highly correlated
236 ZNF565 1 99.0 Weakly correlated
237 ZNF570 1 99.0 Weakly correlated
238 ZNF577 1 94.0 Weakly correlated
239 ZNF599 1 99.0 Weakly correlated
240 ZNF624 1 99.0 Weakly correlated
241 ZNF66 1 0.0 Weakly correlated
242 ZNF689 1 99.0 Weakly correlated
243 ZNF69 1 28.9 Weakly correlated
244 ZNF705E 1 0.0 Weakly correlated
245 ZNF813 1 28.9 Weakly correlated
246 ZNF846 1 74.0 Highly correlated
247 ZNF891 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 1826 43.0 Weakly correlated
2 ZNF263 723 180.0 Weakly correlated
3 ZNF506 350 28.9 Weakly correlated
4 ZNF101 324 43.0 Weakly correlated
5 ZNF257 324 0.0 Weakly correlated
6 ZNF18 218 160.0 Weakly correlated
7 ZNF479 165 6.4 Weakly correlated
8 ZNF182 165 99.0 Weakly correlated
9 ZNF135 153 94.0 Weakly correlated
10 ZNF324 125 99.0 Weakly correlated
11 ZNF140 124 99.0 Weakly correlated
12 ZNF394 120 99.0 Weakly correlated
13 ZNF610 113 28.9 Weakly correlated
14 ZFP37 110 99.0 Weakly correlated
15 ZNF519 101 19.6 Weakly correlated
16 ZNF786 95 99.0 Weakly correlated
17 ZNF382 76 99.0 Weakly correlated
18 ZNF534 75 19.6 Weakly correlated
19 ZNF554 66 99.0 Weakly correlated
20 ZNF792 61 94.0 Weakly correlated
21 ZIM3 60 87.0 Weakly correlated
22 ZNF705B 48 28.9 Weakly correlated
23 ZNF705D 47 28.9 Weakly correlated
24 ZNF264 40 99.0 Weakly correlated
25 ZNF441 37 43.0 Weakly correlated
26 ZNF460 33 74.0 Highly correlated
27 ZNF202 33 160.0 Weakly correlated
28 ZNF429 32 28.9 Weakly correlated
29 ZNF680 32 28.9 Weakly correlated
30 ZNF641 31 99.0 Weakly correlated
31 ZNF695 30 28.9 Weakly correlated
32 ZNF334 28 99.0 Weakly correlated
33 ZNF585A 24 99.0 Weakly correlated
34 ZNF674 22 99.0 Weakly correlated
35 ZNF287 21 99.0 Weakly correlated
36 ZNF793 20 99.0 Weakly correlated
37 ZNF701 18 28.9 Weakly correlated
38 ZNF273 15 28.9 Weakly correlated
39 ZFP57 14 87.0 Weakly correlated
40 ZNF141 14 43.0 Weakly correlated
41 ZNF616 14 43.0 Weakly correlated
42 ZNF425 14 94.0 Weakly correlated
43 ZKSCAN5 13 160.0 Weakly correlated
44 ZNF75D 13 94.0 Weakly correlated
45 ZNF558 13 99.0 Weakly correlated
46 ZNF723 13 15.2 Weakly correlated
47 ZNF573 12 94.0 Weakly correlated
48 ZKSCAN1 11 160.0 Weakly correlated
49 ZNF485 11 94.0 Weakly correlated
50 ZNF197 9 99.0 Weakly correlated
51 ZNF440 9 28.9 Weakly correlated
52 ZNF589 9 28.9 Weakly correlated
53 ZFP90 8 99.0 Weakly correlated
54 ZNF735 8 28.9 Weakly correlated
55 ZNF766 8 43.0 Weakly correlated
56 ZNF320 8 28.9 Weakly correlated
57 ZNF175 7 94.0 Weakly correlated
58 ZNF468 7 28.9 Weakly correlated
59 ZNF585B 7 99.0 Weakly correlated
60 ZIK1 6 87.0 Weakly correlated
61 ZNF707 6 74.0 Highly correlated
62 ZNF2 5 99.0 Weakly correlated
63 ZNF282 5 319.0 Weakly correlated
64 ZNF28 5 28.9 Weakly correlated
65 ZNF44 5 43.0 Weakly correlated
66 ZNF483 5 99.0 Weakly correlated
67 ZNF331 5 94.0 Weakly correlated
68 ZNF30 4 94.0 Weakly correlated
69 ZNF584 4 99.0 Weakly correlated
70 ZNF675 4 8.6 Weakly correlated
71 ZNF671 4 94.0 Weakly correlated
72 ZNF490 4 43.0 Weakly correlated
73 ZNF317 4 99.0 Weakly correlated
74 ZNF679 4 28.9 Weakly correlated
75 ZFP69B 3 99.0 Weakly correlated
76 ZNF136 3 74.0 Highly correlated
77 ZNF169 3 94.0 Weakly correlated
78 ZNF433 3 43.0 Weakly correlated
79 ZNF780A 3 43.0 Weakly correlated
80 ZNF878 3 43.0 Weakly correlated
81 ZNF486 3 8.6 Weakly correlated
82 ZNF677 3 99.0 Weakly correlated
83 ZNF716 3 19.6 Weakly correlated
84 ZNF823 3 43.0 Weakly correlated
85 ZNF789 3 99.0 Weakly correlated
86 ZNF587 3 28.9 Weakly correlated
87 ZNF251 3 94.0 Weakly correlated
88 ZNF283 3 99.0 Weakly correlated
89 ZFP69 2 99.0 Weakly correlated
90 ZNF549 2 87.0 Weakly correlated
91 ZNF8 2 99.0 Weakly correlated
92 ZNF445 2 99.0 Weakly correlated
93 ZNF597 2 94.0 Weakly correlated
94 ZNF816 2 28.9 Weakly correlated
95 ZNF92 2 28.9 Weakly correlated
96 ZNF596 2 94.0 Weakly correlated
97 ZNF749 2 28.9 Weakly correlated
98 ZNF530 2 28.9 Weakly correlated
99 ZNF225 2 74.0 Highly correlated
100 ZNF528 2 43.0 Weakly correlated
101 ZNF566 2 99.0 Weakly correlated
102 ZFP28 1 99.0 Weakly correlated
103 ZFP82 1 99.0 Weakly correlated
104 ZNF12 1 99.0 Weakly correlated
105 ZNF133 1 99.0 Weakly correlated
106 ZNF157 1 99.0 Weakly correlated
107 ZNF230 1 28.9 Weakly correlated
108 ZNF417 1 28.9 Weakly correlated
109 ZNF418 1 43.0 Weakly correlated
110 ZNF582 1 99.0 Weakly correlated
111 ZNF682 1 28.9 Weakly correlated
112 ZNF224 1 69.0 Moderately correlated
113 ZNF563 1 28.9 Weakly correlated
114 ZNF611 1 19.6 Weakly correlated
115 ZNF700 1 28.9 Weakly correlated
116 ZNF805 1 99.0 Weakly correlated
117 ZNF26 1 99.0 Weakly correlated
118 ZNF347 1 43.0 Weakly correlated
119 ZNF514 1 94.0 Weakly correlated
120 ZNF547 1 74.0 Highly correlated
121 ZNF567 1 99.0 Weakly correlated
122 ZNF630 1 94.0 Weakly correlated
123 ZNF765 1 8.6 Weakly correlated
124 ZNF304 1 99.0 Weakly correlated
125 ZNF730 1 19.6 Weakly correlated
126 ZNF879 1 99.0 Weakly correlated
127 ZNF91 1 6.0 Weakly correlated
128 ZNF343 1 74.0 Highly correlated
129 ZNF544 1 0.0 Weakly correlated
130 ZNF613 1 99.0 Weakly correlated
131 ZNF571 1 99.0 Weakly correlated
132 ZNF41 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZFP57 87.0 Weakly correlated
3 ZKSCAN5 160.0 Weakly correlated
4 ZNF182 99.0 Weakly correlated
5 ZNF18 160.0 Weakly correlated
6 ZNF263 180.0 Weakly correlated
7 ZNF287 99.0 Weakly correlated
8 ZNF441 43.0 Weakly correlated
9 ZNF506 28.9 Weakly correlated
10 ZNF554 99.0 Weakly correlated
11 ZNF585A 99.0 Weakly correlated
12 ZNF695 28.9 Weakly correlated
13 ZNF701 28.9 Weakly correlated
14 ZNF75D 94.0 Weakly correlated
15 ZNF792 94.0 Weakly correlated