ZRdb KZFP & Repeats
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SINE_ALUJO

  • Name
    ALUJO
  • Repbase
    AluJo
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000034
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker. This element is described in"Origin and evolution of Alu repetitive elements", by Jurka J., inMolecular Biology Intelligence Unit:The impact of short interspersedelements (SINEs) on the host genome (ed. Richard J. Maraia), R.G.LandesCompany, Austin, pp.25-41 (1995).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggaggatcgcttgagcccaggagttcgagaccagcctgggcaacatagcgagaccccgtctctacaaaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtagtcccagctactcgggaggctgaggcgggaggatcgcttgagcccaggagntcgaggctgcagtgagctatgatcgcgccactgcactccagcctgggcgacagagcgagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 2633 99.0 Weakly correlated
2 ZNF284 1919 43.0 Weakly correlated
3 ZNF394 1746 99.0 Weakly correlated
4 ZNF263 1354 180.0 Weakly correlated
5 ZNF2 822 99.0 Weakly correlated
6 ZNF766 753 43.0 Weakly correlated
7 ZNF18 747 160.0 Weakly correlated
8 ZFP37 680 99.0 Weakly correlated
9 ZNF705B 637 28.9 Weakly correlated
10 ZNF101 579 43.0 Weakly correlated
11 ZFP69B 479 99.0 Weakly correlated
12 ZNF324 468 99.0 Weakly correlated
13 ZNF680 468 28.9 Weakly correlated
14 ZNF257 458 0.0 Weakly correlated
15 ZKSCAN1 418 160.0 Weakly correlated
16 ZNF558 401 99.0 Weakly correlated
17 ZNF589 375 28.9 Weakly correlated
18 ZNF506 363 28.9 Weakly correlated
19 ZIM3 326 87.0 Weakly correlated
20 ZNF705D 325 28.9 Weakly correlated
21 ZNF175 320 94.0 Weakly correlated
22 ZNF554 278 99.0 Weakly correlated
23 ZKSCAN8 267 160.0 Weakly correlated
24 ZNF610 245 28.9 Weakly correlated
25 ZNF140 239 99.0 Weakly correlated
26 ZNF317 231 99.0 Weakly correlated
27 ZNF479 224 6.4 Weakly correlated
28 ZNF182 206 99.0 Weakly correlated
29 ZNF534 201 19.6 Weakly correlated
30 ZNF584 192 99.0 Weakly correlated
31 ZNF251 187 94.0 Weakly correlated
32 ZNF197 186 99.0 Weakly correlated
33 ZNF135 183 94.0 Weakly correlated
34 ZNF723 172 15.2 Weakly correlated
35 ZNF792 168 94.0 Weakly correlated
36 ZNF274 159 99.0 Weakly correlated
37 ZNF519 149 19.6 Weakly correlated
38 ZNF786 135 99.0 Weakly correlated
39 ZNF92 132 28.9 Weakly correlated
40 ZNF585B 120 99.0 Weakly correlated
41 ZNF679 117 28.9 Weakly correlated
42 ZNF441 105 43.0 Weakly correlated
43 ZNF8 97 99.0 Weakly correlated
44 ZNF701 90 28.9 Weakly correlated
45 ZNF793 90 99.0 Weakly correlated
46 ZNF264 85 99.0 Weakly correlated
47 ZFP57 82 87.0 Weakly correlated
48 ZNF695 82 28.9 Weakly correlated
49 ZNF202 79 160.0 Weakly correlated
50 ZNF641 76 99.0 Weakly correlated
51 ZNF547 74 74.0 Highly correlated
52 ZNF28 72 28.9 Weakly correlated
53 ZNF486 70 8.6 Weakly correlated
54 ZNF273 69 28.9 Weakly correlated
55 ZNF597 67 94.0 Weakly correlated
56 ZNF429 61 28.9 Weakly correlated
57 ZNF528 61 43.0 Weakly correlated
58 ZNF707 60 74.0 Highly correlated
59 ZNF585A 58 99.0 Weakly correlated
60 ZNF674 57 99.0 Weakly correlated
61 ZFP28 53 99.0 Weakly correlated
62 ZNF485 51 94.0 Weakly correlated
63 ZNF490 49 43.0 Weakly correlated
64 ZNF75D 47 94.0 Weakly correlated
65 ZNF320 45 28.9 Weakly correlated
66 ZNF133 44 99.0 Weakly correlated
67 ZNF287 44 99.0 Weakly correlated
68 ZNF460 44 74.0 Highly correlated
69 ZNF169 37 94.0 Weakly correlated
70 ZNF224 35 69.0 Moderately correlated
71 ZNF84 34 99.0 Weakly correlated
72 ZNF425 29 94.0 Weakly correlated
73 ZNF778 29 74.0 Highly correlated
74 ZNF141 28 43.0 Weakly correlated
75 ZNF160 28 74.0 Highly correlated
76 ZNF436 28 180.0 Weakly correlated
77 ZNF136 27 74.0 Highly correlated
78 ZNF282 27 319.0 Weakly correlated
79 ZNF671 27 94.0 Weakly correlated
80 ZNF675 27 8.6 Weakly correlated
81 ZNF331 26 94.0 Weakly correlated
82 ZKSCAN5 25 160.0 Weakly correlated
83 ZNF334 25 99.0 Weakly correlated
84 ZNF471 24 94.0 Weakly correlated
85 ZNF823 24 43.0 Weakly correlated
86 ZNF248 23 99.0 Weakly correlated
87 ZNF735 23 28.9 Weakly correlated
88 ZNF440 22 28.9 Weakly correlated
89 ZNF549 22 87.0 Weakly correlated
90 ZNF189 21 99.0 Weakly correlated
91 ZNF730 21 19.6 Weakly correlated
92 ZNF682 20 28.9 Weakly correlated
93 ZNF879 20 99.0 Weakly correlated
94 ZNF468 19 28.9 Weakly correlated
95 ZNF33A 18 99.0 Weakly correlated
96 ZNF354A 18 99.0 Weakly correlated
97 ZNF605 17 99.0 Weakly correlated
98 ZNF573 16 94.0 Weakly correlated
99 ZNF26 15 99.0 Weakly correlated
100 ZNF17 14 69.0 Moderately correlated
101 ZNF41 14 99.0 Weakly correlated
102 ZNF563 14 28.9 Weakly correlated
103 ZNF780A 14 43.0 Weakly correlated
104 ZNF222 13 43.0 Weakly correlated
105 ZNF560 13 43.0 Weakly correlated
106 ZNF677 13 99.0 Weakly correlated
107 ZNF765 13 8.6 Weakly correlated
108 ZNF354C 12 99.0 Weakly correlated
109 ZNF567 12 99.0 Weakly correlated
110 ZNF586 12 43.0 Weakly correlated
111 ZNF611 12 19.6 Weakly correlated
112 ZNF85 12 28.9 Weakly correlated
113 ZFP30 11 99.0 Weakly correlated
114 ZNF10 11 99.0 Weakly correlated
115 ZNF230 11 28.9 Weakly correlated
116 ZNF445 11 99.0 Weakly correlated
117 ZNF789 11 99.0 Weakly correlated
118 ZNF816 11 28.9 Weakly correlated
119 ZNF878 11 43.0 Weakly correlated
120 ZNF91 11 6.0 Weakly correlated
121 ZFP69 10 99.0 Weakly correlated
122 ZNF157 10 99.0 Weakly correlated
123 ZNF347 10 43.0 Weakly correlated
124 ZNF44 10 43.0 Weakly correlated
125 ZNF616 10 43.0 Weakly correlated
126 ZNF845 10 28.9 Weakly correlated
127 ZNF337 9 43.0 Weakly correlated
128 ZNF350 9 99.0 Weakly correlated
129 ZNF583 9 99.0 Weakly correlated
130 ZNF211 8 94.0 Weakly correlated
131 ZNF304 8 99.0 Weakly correlated
132 ZNF30 8 94.0 Weakly correlated
133 ZNF343 8 74.0 Highly correlated
134 ZNF483 8 99.0 Weakly correlated
135 ZNF530 8 28.9 Weakly correlated
136 ZNF716 8 19.6 Weakly correlated
137 ZNF81 8 99.0 Weakly correlated
138 ZNF93 8 8.6 Weakly correlated
139 ZFP90 7 99.0 Weakly correlated
140 ZNF124 7 43.0 Weakly correlated
141 ZNF12 7 99.0 Weakly correlated
142 ZNF544 7 0.0 Weakly correlated
143 ZNF559 7 74.0 Highly correlated
144 ZNF808 7 19.6 Weakly correlated
145 ZFP14 6 99.0 Weakly correlated
146 ZNF100 6 28.9 Weakly correlated
147 ZNF480 6 43.0 Weakly correlated
148 ZNF596 6 94.0 Weakly correlated
149 ZNF75A 6 94.0 Weakly correlated
150 ZNF777 6 319.0 Weakly correlated
151 ZNF850 6 28.9 Weakly correlated
152 ZIK1 5 87.0 Weakly correlated
153 ZNF383 5 99.0 Weakly correlated
154 ZNF420 5 94.0 Weakly correlated
155 ZNF433 5 43.0 Weakly correlated
156 ZNF510 5 99.0 Weakly correlated
157 ZNF543 5 99.0 Weakly correlated
158 ZNF557 5 15.2 Weakly correlated
159 ZNF627 5 74.0 Highly correlated
160 ZNF684 5 99.0 Weakly correlated
161 ZNF250 4 99.0 Weakly correlated
162 ZNF417 4 28.9 Weakly correlated
163 ZNF571 4 99.0 Weakly correlated
164 ZNF607 4 43.0 Weakly correlated
165 ZNF613 4 99.0 Weakly correlated
166 ZNF658 4 99.0 Weakly correlated
167 ZNF700 4 28.9 Weakly correlated
168 ZNF705E 4 0.0 Weakly correlated
169 ZNF747 4 43.0 Weakly correlated
170 ZNF805 4 99.0 Weakly correlated
171 ZNF215 3 99.0 Weakly correlated
172 ZNF253 3 19.6 Weakly correlated
173 ZNF256 3 74.0 Highly correlated
174 ZNF302 3 43.0 Weakly correlated
175 ZNF514 3 94.0 Weakly correlated
176 ZNF561 3 43.0 Weakly correlated
177 ZNF565 3 99.0 Weakly correlated
178 ZNF669 3 43.0 Weakly correlated
179 ZNF726 3 28.9 Weakly correlated
180 ZNF736 3 43.0 Weakly correlated
181 ZNF763 3 15.2 Weakly correlated
182 ZNF7 3 99.0 Weakly correlated
183 ZNF813 3 28.9 Weakly correlated
184 ZNF814 3 0.0 Weakly correlated
185 RBAK 2 99.0 Weakly correlated
186 ZFP82 2 99.0 Weakly correlated
187 ZKSCAN3 2 99.0 Weakly correlated
188 ZKSCAN4 2 99.0 Weakly correlated
189 ZNF114 2 28.9 Weakly correlated
190 ZNF132 2 94.0 Weakly correlated
191 ZNF180 2 99.0 Weakly correlated
192 ZNF20 2 43.0 Weakly correlated
193 ZNF213 2 180.0 Weakly correlated
194 ZNF233 2 99.0 Weakly correlated
195 ZNF286A 2 160.0 Weakly correlated
196 ZNF333 2 99.0 Weakly correlated
197 ZNF416 2 43.0 Weakly correlated
198 ZNF418 2 43.0 Weakly correlated
199 ZNF43 2 43.0 Weakly correlated
200 ZNF500 2 160.0 Weakly correlated
201 ZNF568 2 99.0 Weakly correlated
202 ZNF57 2 28.9 Weakly correlated
203 ZNF587 2 28.9 Weakly correlated
204 ZNF624 2 99.0 Weakly correlated
205 ZNF630 2 94.0 Weakly correlated
206 ZNF689 2 99.0 Weakly correlated
207 ZNF729 2 8.6 Weakly correlated
208 ZNF746 2 99.0 Weakly correlated
209 ZNF749 2 28.9 Weakly correlated
210 ZNF74 2 99.0 Weakly correlated
211 ZNF761 2 19.6 Weakly correlated
212 ZNF77 2 87.0 Weakly correlated
213 PRDM9 1 0.0 Weakly correlated
214 ZKSCAN2 1 180.0 Weakly correlated
215 ZNF154 1 94.0 Weakly correlated
216 ZNF177 1 94.0 Weakly correlated
217 ZNF184 1 99.0 Weakly correlated
218 ZNF212 1 160.0 Weakly correlated
219 ZNF214 1 99.0 Weakly correlated
220 ZNF223 1 43.0 Weakly correlated
221 ZNF225 1 74.0 Highly correlated
222 ZNF234 1 99.0 Weakly correlated
223 ZNF25 1 99.0 Weakly correlated
224 ZNF267 1 43.0 Weakly correlated
225 ZNF283 1 99.0 Weakly correlated
226 ZNF300 1 99.0 Weakly correlated
227 ZNF33B 1 99.0 Weakly correlated
228 ZNF37A 1 99.0 Weakly correlated
229 ZNF3 1 160.0 Weakly correlated
230 ZNF419 1 28.9 Weakly correlated
231 ZNF426 1 87.0 Weakly correlated
232 ZNF439 1 8.6 Weakly correlated
233 ZNF454 1 99.0 Weakly correlated
234 ZNF461 1 99.0 Weakly correlated
235 ZNF484 1 99.0 Weakly correlated
236 ZNF487 1 28.9 Weakly correlated
237 ZNF548 1 94.0 Weakly correlated
238 ZNF562 1 28.9 Weakly correlated
239 ZNF564 1 74.0 Highly correlated
240 ZNF569 1 99.0 Weakly correlated
241 ZNF578 1 15.2 Weakly correlated
242 ZNF599 1 99.0 Weakly correlated
243 ZNF620 1 99.0 Weakly correlated
244 ZNF626 1 0.0 Weakly correlated
245 ZNF665 1 28.9 Weakly correlated
246 ZNF667 1 99.0 Weakly correlated
247 ZNF681 1 28.9 Weakly correlated
248 ZNF688 1 160.0 Weakly correlated
249 ZNF717 1 0.0 Weakly correlated
250 ZNF718 1 19.6 Weakly correlated
251 ZNF727 1 19.6 Weakly correlated
252 ZNF776 1 43.0 Weakly correlated
253 ZNF780B 1 74.0 Highly correlated
254 ZNF782 1 99.0 Weakly correlated
255 ZNF799 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 1773 43.0 Weakly correlated
2 ZNF263 550 180.0 Weakly correlated
3 ZNF101 346 43.0 Weakly correlated
4 ZNF506 327 28.9 Weakly correlated
5 ZNF257 289 0.0 Weakly correlated
6 ZNF18 212 160.0 Weakly correlated
7 ZNF135 176 94.0 Weakly correlated
8 ZNF182 169 99.0 Weakly correlated
9 ZNF324 154 99.0 Weakly correlated
10 ZNF140 152 99.0 Weakly correlated
11 ZNF519 115 19.6 Weakly correlated
12 ZNF786 113 99.0 Weakly correlated
13 ZNF610 105 28.9 Weakly correlated
14 ZNF394 104 99.0 Weakly correlated
15 ZFP37 100 99.0 Weakly correlated
16 ZNF554 85 99.0 Weakly correlated
17 ZNF705B 84 28.9 Weakly correlated
18 ZNF792 79 94.0 Weakly correlated
19 ZNF382 75 99.0 Weakly correlated
20 ZIM3 69 87.0 Weakly correlated
21 ZNF705D 63 28.9 Weakly correlated
22 ZNF534 47 19.6 Weakly correlated
23 ZNF264 46 99.0 Weakly correlated
24 ZNF460 39 74.0 Highly correlated
25 ZNF441 35 43.0 Weakly correlated
26 ZNF695 35 28.9 Weakly correlated
27 ZNF202 34 160.0 Weakly correlated
28 ZNF479 30 6.4 Weakly correlated
29 ZNF641 29 99.0 Weakly correlated
30 ZNF680 27 28.9 Weakly correlated
31 ZNF674 26 99.0 Weakly correlated
32 ZNF287 26 99.0 Weakly correlated
33 ZNF273 24 28.9 Weakly correlated
34 ZNF429 23 28.9 Weakly correlated
35 ZNF585A 20 99.0 Weakly correlated
36 ZNF793 18 99.0 Weakly correlated
37 ZNF334 17 99.0 Weakly correlated
38 ZNF723 16 15.2 Weakly correlated
39 ZNF440 14 28.9 Weakly correlated
40 ZKSCAN1 12 160.0 Weakly correlated
41 ZNF485 11 94.0 Weakly correlated
42 ZNF585B 11 99.0 Weakly correlated
43 ZNF675 11 8.6 Weakly correlated
44 ZNF558 11 99.0 Weakly correlated
45 ZFP69B 10 99.0 Weakly correlated
46 ZNF823 10 43.0 Weakly correlated
47 ZNF197 10 99.0 Weakly correlated
48 ZKSCAN5 9 160.0 Weakly correlated
49 ZNF766 9 43.0 Weakly correlated
50 ZNF589 9 28.9 Weakly correlated
51 ZNF2 9 99.0 Weakly correlated
52 ZFP57 8 87.0 Weakly correlated
53 ZNF141 8 43.0 Weakly correlated
54 ZNF616 8 43.0 Weakly correlated
55 ZNF251 8 94.0 Weakly correlated
56 ZNF175 7 94.0 Weakly correlated
57 ZNF584 7 99.0 Weakly correlated
58 ZNF701 7 28.9 Weakly correlated
59 ZNF780A 7 43.0 Weakly correlated
60 ZFP28 6 99.0 Weakly correlated
61 ZKSCAN8 6 160.0 Weakly correlated
62 ZNF425 6 94.0 Weakly correlated
63 ZNF331 6 94.0 Weakly correlated
64 ZNF28 6 28.9 Weakly correlated
65 ZNF468 6 28.9 Weakly correlated
66 ZNF707 6 74.0 Highly correlated
67 ZNF75D 6 94.0 Weakly correlated
68 ZNF317 6 99.0 Weakly correlated
69 ZFP90 5 99.0 Weakly correlated
70 ZNF169 5 94.0 Weakly correlated
71 ZNF222 5 43.0 Weakly correlated
72 ZNF671 5 94.0 Weakly correlated
73 ZNF679 5 28.9 Weakly correlated
74 ZNF596 5 94.0 Weakly correlated
75 ZIK1 4 87.0 Weakly correlated
76 ZNF133 4 99.0 Weakly correlated
77 ZNF445 4 99.0 Weakly correlated
78 ZNF547 4 74.0 Highly correlated
79 ZNF573 4 94.0 Weakly correlated
80 ZNF320 3 28.9 Weakly correlated
81 ZNF483 3 99.0 Weakly correlated
82 ZNF189 3 99.0 Weakly correlated
83 ZNF677 3 99.0 Weakly correlated
84 ZNF417 3 28.9 Weakly correlated
85 ZNF528 3 43.0 Weakly correlated
86 ZNF735 3 28.9 Weakly correlated
87 ZNF789 3 99.0 Weakly correlated
88 ZNF682 3 28.9 Weakly correlated
89 ZNF605 3 99.0 Weakly correlated
90 ZNF549 2 87.0 Weakly correlated
91 ZNF44 2 43.0 Weakly correlated
92 ZNF597 2 94.0 Weakly correlated
93 ZNF716 2 19.6 Weakly correlated
94 ZNF8 2 99.0 Weakly correlated
95 ZNF160 2 74.0 Highly correlated
96 ZNF343 2 74.0 Highly correlated
97 ZNF530 2 28.9 Weakly correlated
98 ZNF211 2 94.0 Weakly correlated
99 ZNF544 2 0.0 Weakly correlated
100 ZKSCAN4 1 99.0 Weakly correlated
101 ZNF132 1 94.0 Weakly correlated
102 ZNF283 1 99.0 Weakly correlated
103 ZNF563 1 28.9 Weakly correlated
104 ZNF736 1 43.0 Weakly correlated
105 ZNF436 1 180.0 Weakly correlated
106 ZNF587 1 28.9 Weakly correlated
107 ZNF746 1 99.0 Weakly correlated
108 ZNF212 1 160.0 Weakly correlated
109 ZNF416 1 43.0 Weakly correlated
110 ZNF433 1 43.0 Weakly correlated
111 ZNF490 1 43.0 Weakly correlated
112 ZNF805 1 99.0 Weakly correlated
113 ZNF814 1 0.0 Weakly correlated
114 ZNF20 1 43.0 Weakly correlated
115 ZNF213 1 180.0 Weakly correlated
116 ZNF256 1 74.0 Highly correlated
117 ZNF26 1 99.0 Weakly correlated
118 ZNF282 1 319.0 Weakly correlated
119 ZNF33A 1 99.0 Weakly correlated
120 ZNF57 1 28.9 Weakly correlated
121 ZNF688 1 160.0 Weakly correlated
122 ZNF845 1 28.9 Weakly correlated
123 ZNF583 1 99.0 Weakly correlated
124 ZNF700 1 28.9 Weakly correlated
125 ZNF765 1 8.6 Weakly correlated
126 ZNF816 1 28.9 Weakly correlated
127 ZNF347 1 43.0 Weakly correlated
128 ZNF561 1 43.0 Weakly correlated
129 ZNF778 1 74.0 Highly correlated
130 ZNF337 1 43.0 Weakly correlated
131 ZNF3 1 160.0 Weakly correlated
132 ZNF705E 1 0.0 Weakly correlated
133 ZNF729 1 8.6 Weakly correlated
134 ZNF84 1 99.0 Weakly correlated
135 ZNF250 1 99.0 Weakly correlated
136 ZNF560 1 43.0 Weakly correlated
137 ZNF567 1 99.0 Weakly correlated
138 ZNF730 1 19.6 Weakly correlated
139 ZNF81 1 99.0 Weakly correlated
140 ZNF91 1 6.0 Weakly correlated
141 ZNF92 1 28.9 Weakly correlated
142 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Weakly correlated
2 ZFP37 99.0 Weakly correlated
3 ZFP69B 99.0 Weakly correlated
4 ZKSCAN5 160.0 Weakly correlated
5 ZNF182 99.0 Weakly correlated
6 ZNF18 160.0 Weakly correlated
7 ZNF263 180.0 Weakly correlated
8 ZNF287 99.0 Weakly correlated
9 ZNF28 28.9 Weakly correlated
10 ZNF429 28.9 Weakly correlated
11 ZNF441 43.0 Weakly correlated
12 ZNF506 28.9 Weakly correlated
13 ZNF554 99.0 Weakly correlated
14 ZNF695 28.9 Weakly correlated
15 ZNF701 28.9 Weakly correlated
16 ZNF792 94.0 Weakly correlated
17 ZNF793 99.0 Weakly correlated