ZRdb KZFP & Repeats
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Human_ZNF84

  • Protein
    Zinc finger protein 84
  • Length
    738
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    P51523
  • NCBI_ID
    7637
Sequence:
MTMLQESFSFDDLSVDFTQKEWQLLDPSQKNLYKDVMLENYSSLVSLGYEVMKPDVIFKLEQGEEPWVGDGEIPSSDSPEVWKVDGNMMWHQDNQDKLKIIKRGHECDAFGKNFNLNMNFVPLRKSNSEGDLDGLILKHHLDLLIPKGDYGKAESDDFNVFDNFFLHSKPEDTDTWLKYYDCDKYKESYKKSQIIIYHRNRLGEKLYECSECRKRFSKKPSLIKHQSRHIRDIAFGCGNCGKTFPQKSQFITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCNECGRAFSEKSNLINHQRIHTGEKPFECRECGKAFSRKSQLVTHHRTHTGTKPFGCSDCRKAFFEKSELIRHQTIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRTHTGEKPYECSECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQRTHTGEKPYECSECGKAFGEKSSLATHQRTHTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYECNECRKAFREKSSLINHQRIHTGEKPFECSECGKAFSRKSHLIPHQRTHTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYRCIECGKAFSQKSQLINHQRTHTVKKS
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 8..79
2 C2h2 207..229
3 C2h2 235..257
4 C2h2 263..285
5 C2h2 291..313
6 C2h2 319..341
7 C2h2 347..369
8 C2h2 375..397
9 C2h2 403..425
10 C2h2 431..453
11 C2h2 459..481
12 C2h2 487..509
13 C2h2 515..537
14 C2h2 543..565
15 C2h2 571..593
16 C2h2 599..621
17 C2h2 627..649
18 C2h2 655..677
19 C2h2 683..705
20 C2h2 711..733
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA binding
3 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Molecular Function zinc ion binding
6 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1PA3 1100 **** 19.6 Weakly correlated
2 L1PA7 949 **** 74.0 Weakly correlated
3 L1PA5 662 **** 19.6 Weakly correlated
4 L1PA16 651 **** 74.0 Weakly correlated
5 L1PA4 629 **** 19.6 Weakly correlated
6 L1PA6 458 **** 28.9 Weakly correlated
7 L1PA15 366 **** 74.0 Weakly correlated
8 L1PA2 351 **** 15.2 Weakly correlated
9 L1PA10 346 **** 74.0 Weakly correlated
10 L1PA13 291 **** 74.0 Weakly correlated
11 L1PREC2 287 **** 43.0 Weakly correlated
12 L1PA8 254 **** 74.0 Weakly correlated
13 L1PA11 228 **** 74.0 Weakly correlated
14 L1PA14 153 **** 74.0 Weakly correlated
15 L1M5 139 **** 99.0 Highly correlated
16 L1PA8A 137 **** 74.0 Weakly correlated
17 AluY 106 n.s 74.0 Weakly correlated
18 L1MC1 96 **** 99.0 Highly correlated
19 L1P1 90 **** 19.6 Weakly correlated
20 L1P4 89 **** 74.0 Weakly correlated
21 L1P3 86 **** 74.0 Weakly correlated
22 AluSx1 84 n.s 74.0 Weakly correlated
23 L1PB4 83 **** 99.0 Highly correlated
24 L1ME3G 81 **** 99.0 Highly correlated
25 L1PA17 79 **** 74.0 Weakly correlated
26 AluSx 77 n.s 74.0 Weakly correlated
27 L1ME1 76 * 99.0 Highly correlated
28 L1ME3Cz 71 **** 99.0 Highly correlated
29 L2a 71 n.s 99.0 Highly correlated
30 AluJb 69 n.s 74.0 Weakly correlated
31 L1ME3A 69 **** 99.0 Highly correlated
32 AluSz 59 n.s 74.0 Weakly correlated
33 L1MA3 58 *** 74.0 Weakly correlated
34 L1MA2 52 **** 74.0 Weakly correlated
35 L1MA4 52 **** 87.0 Weakly correlated
36 L1MB3 52 **** 99.0 Highly correlated
37 L1PA12 48 **** 74.0 Weakly correlated
38 L1MA9 46 * 99.0 Highly correlated
39 L1HS 44 **** 8.6 Weakly correlated
40 L1PB1 44 n.s 74.0 Weakly correlated
41 L2c 43 n.s 99.0 Highly correlated
42 AluSq2 41 n.s 74.0 Weakly correlated
43 L1ME3 39 **** 99.0 Highly correlated
44 L1MB7 38 n.s 99.0 Highly correlated
45 L1MB8 36 n.s 99.0 Highly correlated
46 L1ME4b 36 ** 99.0 Highly correlated
47 AluSc 35 n.s 74.0 Weakly correlated
48 L1MB4 35 **** 99.0 Highly correlated
49 L1ME3B 35 **** 99.0 Highly correlated
50 AluJo 34 n.s 74.0 Weakly correlated
51 L1M4 34 n.s 99.0 Highly correlated
52 L1PB2 34 **** 74.0 Weakly correlated
53 MIRb 33 n.s 99.0 Highly correlated
54 AluJr 32 n.s 74.0 Weakly correlated
55 AluSc8 32 n.s 74.0 Weakly correlated
56 L2b 32 n.s 99.0 Highly correlated
57 L1M2 31 * 99.0 Highly correlated
58 L1MB2 31 *** 99.0 Highly correlated
59 L1MD2 31 * 99.0 Highly correlated
60 L1ME4a 31 n.s 99.0 Highly correlated
61 L2 29 n.s 99.0 Highly correlated
62 MIR3 29 n.s 99.0 Highly correlated
63 AluSp 28 n.s 74.0 Weakly correlated
64 L1MC5a 28 * 99.0 Highly correlated
65 L1ME2 28 n.s 99.0 Highly correlated
66 THE1B 28 n.s 43.0 Weakly correlated
67 AluSz6 27 n.s 74.0 Weakly correlated
68 L1MA7 27 ** 87.0 Weakly correlated
69 L1MB5 27 ** 99.0 Highly correlated
70 L1MC2 27 *** 99.0 Highly correlated
71 L1PB3 27 **** 74.0 Weakly correlated
72 L1MD1 25 * 99.0 Highly correlated
73 L1MA5A 24 **** 87.0 Weakly correlated
74 L1MA8 24 n.s 87.0 Weakly correlated
75 L1P2 24 **** 28.9 Weakly correlated
76 L1MA1 23 n.s 74.0 Weakly correlated
77 MIR 22 n.s 99.0 Highly correlated
78 L1MD 21 ** 99.0 Highly correlated
79 AluSg 20 n.s 74.0 Weakly correlated
80 L1M3 20 ** 99.0 Highly correlated
81 L1ME3F 20 **** 99.0 Highly correlated
82 L1MA4A 18 n.s 87.0 Weakly correlated
83 AluSq 17 n.s 74.0 Weakly correlated
84 L1ME3D 17 *** 99.0 Highly correlated
85 L1ME5 17 **** 99.0 Highly correlated
86 AluSx3 16 n.s 74.0 Weakly correlated
87 L1MA6 16 n.s 87.0 Weakly correlated
88 L1MC 16 * 99.0 Highly correlated
89 L1MC3 16 n.s 99.0 Highly correlated
90 L1ME2z 16 * 99.0 Highly correlated
91 L1P 16 **** 19.6 Weakly correlated
92 L1MC4a 15 n.s 99.0 Highly correlated
93 L1M1 13 n.s 74.0 Weakly correlated
94 L1ME3C 13 *** 99.0 Highly correlated
95 L1ME3E 13 ** 99.0 Highly correlated
96 MSTA 13 n.s 43.0 Weakly correlated
97 L1M 12 **** 74.0 Weakly correlated
98 L1MA5 12 n.s 87.0 Weakly correlated
99 L1MB1 12 n.s 99.0 Highly correlated
100 AluSx4 11 n.s 74.0 Weakly correlated
101 HAL1 11 n.s 99.0 Highly correlated
102 L3 11 n.s 99.0 Highly correlated
103 L1MC4 10 n.s 99.0 Highly correlated
104 L1ME4c 10 n.s 99.0 Highly correlated
105 L1MEc 10 n.s 99.0 Highly correlated
106 FLAM_C 9 n.s 74.0 Weakly correlated
107 L1MEd 9 n.s 99.0 Highly correlated
108 L1MEg 9 n.s 99.0 Highly correlated
109 L1PA15-16 7 n.s 74.0 Weakly correlated
110 L1PB 7 * 74.0 Weakly correlated
111 MER11A 7 * 28.9 Weakly correlated
112 MIRc 7 n.s 99.0 Highly correlated
113 MLT1D 7 n.s 99.0 Highly correlated
114 Alu 6 *** 74.0 Weakly correlated
115 AluJr4 6 n.s 74.0 Weakly correlated
116 AluSc5 6 n.s 74.0 Weakly correlated
117 AluYb8 6 n.s 15.2 Weakly correlated
118 FLAM_A 6 n.s 74.0 Weakly correlated
119 FRAM 6 n.s 74.0 Weakly correlated
120 L1MA10 6 n.s 99.0 Highly correlated
121 L1MC5 6 n.s 99.0 Highly correlated
122 L1MDa 6 n.s 99.0 Highly correlated
123 L1MEf 6 n.s 99.0 Highly correlated
124 LTR50 6 * 99.0 Highly correlated
125 MLT1C 6 n.s 94.0 Weakly correlated
126 AluSg7 5 n.s 74.0 Weakly correlated
127 AluYa5 5 n.s 15.2 Weakly correlated
128 FAM 5 n.s 87.0 Weakly correlated
129 L1M6 5 n.s 99.0 Highly correlated
130 L1P4a 5 * 74.0 Weakly correlated
131 MLT1A0 5 n.s 99.0 Highly correlated
132 MLT1B 5 n.s 99.0 Highly correlated
133 MLT1K 5 n.s 99.0 Highly correlated
134 MLT1L 5 n.s 99.0 Highly correlated
135 THE1C 5 n.s 43.0 Weakly correlated
136 AluYc 4 n.s 74.0 Weakly correlated
137 AluYm1 4 n.s 19.6 Weakly correlated
138 L1M4c 4 n.s 99.0 Highly correlated
139 L1MCa 4 n.s 99.0 Highly correlated
140 L4_A_Mam 4 n.s 99.0 Highly correlated
141 LTR16E2 4 n.s 99.0 Highly correlated
142 MIR1_Amn 4 n.s 319.0 Weakly correlated
143 THE1D 4 n.s 43.0 Weakly correlated
144 AluSg4 3 n.s 74.0 Weakly correlated
145 AluYj4 3 n.s 0.0 Weakly correlated
146 ERVL-E-int 3 n.s 99.0 Highly correlated
147 HERVL40-int 3 n.s 99.0 Highly correlated
148 L1MD3 3 n.s 99.0 Highly correlated
149 L1MEj 3 n.s 99.0 Highly correlated
150 L1P5 3 ** 74.0 Weakly correlated
151 L1PBa 3 n.s 74.0 Weakly correlated
152 LTR10A 3 ** 28.9 Weakly correlated
153 LTR1D1 3 * 43.0 Weakly correlated
154 LTR33 3 n.s 99.0 Highly correlated
155 MER4E1 3 n.s 74.0 Weakly correlated
156 MER50 3 n.s 43.0 Weakly correlated
157 MER61A 3 * 43.0 Weakly correlated
158 MLT1G 3 n.s 99.0 Highly correlated
159 MLT2B3 3 n.s 99.0 Highly correlated
160 MSTB1 3 n.s 74.0 Weakly correlated
161 SVA_D 3 n.s 15.2 Weakly correlated
162 AluSq10 2 n.s 74.0 Weakly correlated
163 AluYb9 2 ** 15.2 Weakly correlated
164 AluYe5 2 n.s 74.0 Weakly correlated
165 AluYg6 2 * 15.2 Weakly correlated
166 AluYh9 2 **** 15.2 Weakly correlated
167 ERV24_Prim-int 2 n.s 74.0 Weakly correlated
168 ERVL-B4-int 2 n.s 99.0 Highly correlated
169 HAL1M8 2 n.s 99.0 Highly correlated
170 HAL1b 2 n.s 99.0 Highly correlated
171 HERV15-int 2 * 28.9 Weakly correlated
172 HUERS-P3-int 2 n.s 43.0 Weakly correlated
173 L1M2a 2 n.s 87.0 Weakly correlated
174 L1M3f 2 n.s 87.0 Weakly correlated
175 L1M4a2 2 n.s 99.0 Highly correlated
176 L1M4b 2 n.s 99.0 Highly correlated
177 L1MDb 2 n.s 99.0 Highly correlated
178 L1MEi 2 n.s 99.0 Highly correlated
179 L3b 2 n.s 99.0 Highly correlated
180 LTR10F 2 * 28.9 Weakly correlated
181 LTR12C 2 n.s 19.6 Weakly correlated
182 LTR19C 2 ** 43.0 Weakly correlated
183 LTR41 2 n.s 99.0 Highly correlated
184 LTR43 2 * 74.0 Weakly correlated
185 LTR46 2 ** 43.0 Weakly correlated
186 LTR49-int 2 n.s 74.0 Weakly correlated
187 LTR52 2 n.s 99.0 Highly correlated
188 LTR9D 2 n.s 43.0 Weakly correlated
189 MER21B 2 n.s 99.0 Highly correlated
190 MER21C 2 n.s 99.0 Highly correlated
191 MER39 2 n.s 74.0 Weakly correlated
192 MER52D 2 n.s 74.0 Weakly correlated
193 MLT1E2 2 n.s 99.0 Highly correlated
194 MLT1F2 2 n.s 99.0 Highly correlated
195 MLT1H1 2 n.s 99.0 Highly correlated
196 MLT1J 2 n.s 99.0 Highly correlated
197 MLT1O 2 n.s 99.0 Highly correlated
198 MamGypsy2-LTR 2 ** 99.0 Highly correlated
199 MamRTE1 2 n.s 99.0 Highly correlated
200 THE1B-int 2 n.s 43.0 Weakly correlated
201 AluSq4 1 n.s 74.0 Weakly correlated
202 AluYf1 1 n.s 19.6 Weakly correlated
203 AluYh3 1 n.s 15.2 Weakly correlated
204 AluYi6 1 n.s 15.2 Weakly correlated
205 AluYk3 1 n.s 19.6 Weakly correlated
206 AmnSINE1 1 n.s 319.0 Weakly correlated
207 CR1-12_AMi 1 ** 319.0 Weakly correlated
208 CR1-16_AMi 1 * 319.0 Weakly correlated
209 CR1_Mam 1 n.s 99.0 Highly correlated
210 ERV3-16A3_I-int 1 n.s 99.0 Highly correlated
211 HAL1ME 1 n.s 99.0 Highly correlated
212 HERV9NC-int 1 n.s 19.6 Weakly correlated
213 HERVK13-int 1 * 19.6 Weakly correlated
214 HERVK14-int 1 n.s 28.9 Weakly correlated
215 HERVS71-int 1 n.s 28.9 Weakly correlated
216 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
217 L1M2c 1 n.s 87.0 Weakly correlated
218 L1M3c 1 n.s 99.0 Highly correlated
219 L1M3e 1 n.s 99.0 Highly correlated
220 L1M4a1 1 n.s 99.0 Highly correlated
221 L1M7 1 n.s 99.0 Highly correlated
222 L1M8 1 n.s 99.0 Highly correlated
223 L1MCc 1 n.s 99.0 Highly correlated
224 L1MEa 1 n.s 99.0 Highly correlated
225 L1MEb 1 n.s 99.0 Highly correlated
226 L1MEh 1 n.s 99.0 Highly correlated
227 L1P4b 1 n.s 74.0 Weakly correlated
228 L1PBa1 1 n.s 74.0 Weakly correlated
229 L2-1_AMi 1 n.s 319.0 Weakly correlated
230 L2-1_Crp 1 *** 319.0 Weakly correlated
231 L4_B_Mam 1 n.s 99.0 Highly correlated
232 L4_C_Mam 1 n.s 99.0 Highly correlated
233 LTR13 1 n.s 19.6 Weakly correlated
234 LTR16A 1 n.s 99.0 Highly correlated
235 LTR16C 1 n.s 99.0 Highly correlated
236 LTR17 1 n.s 28.9 Weakly correlated
237 LTR19B 1 n.s 43.0 Weakly correlated
238 LTR1A2 1 n.s 43.0 Weakly correlated
239 LTR1D 1 n.s 43.0 Weakly correlated
240 LTR2 1 n.s 28.9 Weakly correlated
241 LTR23 1 n.s 74.0 Weakly correlated
242 LTR24 1 n.s 74.0 Weakly correlated
243 LTR25 1 n.s 43.0 Weakly correlated
244 LTR35 1 ** 43.0 Weakly correlated
245 LTR37B 1 n.s 99.0 Highly correlated
246 LTR48B 1 n.s 74.0 Weakly correlated
247 LTR5B 1 n.s 28.9 Weakly correlated
248 LTR71B 1 n.s 43.0 Weakly correlated
249 LTR73 1 * 99.0 Highly correlated
250 LTR75 1 n.s 99.0 Highly correlated
251 LTR7B 1 n.s 28.9 Weakly correlated
252 LTR8 1 n.s 43.0 Weakly correlated
253 LTR85a 1 n.s 99.0 Highly correlated
254 LTR88b 1 n.s 99.0 Highly correlated
255 LTR9B 1 n.s 43.0 Weakly correlated
256 MER11B 1 n.s 19.6 Weakly correlated
257 MER11C 1 n.s 19.6 Weakly correlated
258 MER11D 1 n.s 19.6 Weakly correlated
259 MER21A 1 n.s 74.0 Weakly correlated
260 MER31B 1 n.s 99.0 Highly correlated
261 MER39B 1 n.s 74.0 Weakly correlated
262 MER41B 1 n.s 74.0 Weakly correlated
263 MER4A1 1 n.s 74.0 Weakly correlated
264 MER4B-int 1 n.s 99.0 Highly correlated
265 MER4C 1 n.s 74.0 Weakly correlated
266 MER50-int 1 n.s 43.0 Weakly correlated
267 MER51A 1 n.s 43.0 Weakly correlated
268 MER51B 1 n.s 43.0 Weakly correlated
269 MER51D 1 * 43.0 Weakly correlated
270 MER54A 1 n.s 87.0 Weakly correlated
271 MER57B2 1 n.s 43.0 Weakly correlated
272 MER57C1 1 * 74.0 Weakly correlated
273 MER57E3 1 * 74.0 Weakly correlated
274 MER61F 1 * 43.0 Weakly correlated
275 MER65-int 1 n.s 87.0 Weakly correlated
276 MER65A 1 n.s 74.0 Weakly correlated
277 MER65C 1 n.s 74.0 Weakly correlated
278 MER65D 1 n.s 87.0 Weakly correlated
279 MER66B 1 n.s 43.0 Weakly correlated
280 MER66C 1 n.s 43.0 Weakly correlated
281 MER67D 1 n.s 99.0 Highly correlated
282 MER68-int 1 n.s 99.0 Highly correlated
283 MER70C 1 n.s 99.0 Highly correlated
284 MER72 1 n.s 43.0 Weakly correlated
285 MER74A 1 n.s 99.0 Highly correlated
286 MER76 1 n.s 99.0 Highly correlated
287 MER77 1 n.s 99.0 Highly correlated
288 MER89 1 n.s 99.0 Highly correlated
289 MLT1A 1 n.s 99.0 Highly correlated
290 MLT1A0-int 1 n.s 99.0 Highly correlated
291 MLT1A1 1 n.s 87.0 Weakly correlated
292 MLT1E1A 1 n.s 99.0 Highly correlated
293 MLT1G1 1 n.s 99.0 Highly correlated
294 MLT1G3 1 n.s 99.0 Highly correlated
295 MLT1H 1 n.s 99.0 Highly correlated
296 MLT1H2 1 n.s 99.0 Highly correlated
297 MLT1I 1 n.s 99.0 Highly correlated
298 MLT1J1 1 n.s 99.0 Highly correlated
299 MLT2B1 1 n.s 99.0 Highly correlated
300 MLT2B5 1 n.s 87.0 Weakly correlated
301 MSTA-int 1 n.s 43.0 Weakly correlated
302 MSTB 1 n.s 43.0 Weakly correlated
303 MSTB2 1 n.s 74.0 Weakly correlated
304 MamGypLTR3 1 n.s 99.0 Highly correlated
305 PRIMA4_LTR 1 n.s 74.0 Weakly correlated
306 SVA_A 1 n.s 19.6 Weakly correlated
307 SVA_B 1 n.s 15.2 Weakly correlated
308 SVA_C 1 n.s 15.2 Weakly correlated
309 SVA_F 1 n.s 0.0 Weakly correlated
310 THE1A 1 n.s 43.0 Weakly correlated
311 THE1C-int 1 n.s 43.0 Weakly correlated
312 X6B_LINE 1 n.s 99.0 Highly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1PA7 901 **** 74.0 Weakly correlated
2 L1PA3 899 **** 19.6 Weakly correlated
3 L1PA16 624 **** 74.0 Weakly correlated
4 L1PA5 592 **** 19.6 Weakly correlated
5 L1PA4 545 **** 19.6 Weakly correlated
6 L1PA6 427 **** 28.9 Weakly correlated
7 L1PA15 348 **** 74.0 Weakly correlated
8 L1PA10 323 **** 74.0 Weakly correlated
9 L1PA13 278 **** 74.0 Weakly correlated
10 L1PREC2 267 **** 43.0 Weakly correlated
11 L1PA2 250 **** 15.2 Weakly correlated
12 L1PA8 240 **** 74.0 Weakly correlated
13 L1PA11 216 **** 74.0 Weakly correlated
14 L1PA14 146 **** 74.0 Weakly correlated
15 L1PA8A 136 **** 74.0 Weakly correlated
16 L1M5 113 **** 99.0 Highly correlated
17 L1MC1 86 **** 99.0 Highly correlated
18 L1P4 83 **** 74.0 Weakly correlated
19 L1PB4 82 **** 99.0 Highly correlated
20 L1PA17 72 **** 74.0 Weakly correlated
21 L1P3 69 **** 74.0 Weakly correlated
22 L1P1 68 **** 19.6 Weakly correlated
23 L1ME3G 67 **** 99.0 Highly correlated
24 L1ME1 64 n.s 99.0 Highly correlated
25 L1ME3A 62 **** 99.0 Highly correlated
26 L1ME3Cz 59 **** 99.0 Highly correlated
27 L1MA3 54 *** 74.0 Weakly correlated
28 L1PA12 47 **** 74.0 Weakly correlated
29 L1MA4 46 *** 87.0 Weakly correlated
30 L1MB3 45 ** 99.0 Highly correlated
31 L1MA2 45 ** 74.0 Weakly correlated
32 L1MA9 43 * 99.0 Highly correlated
33 L1ME3 34 **** 99.0 Highly correlated
34 L1PB1 33 n.s 74.0 Weakly correlated
35 L1PB2 32 **** 74.0 Weakly correlated
36 L1MB4 31 **** 99.0 Highly correlated
37 L1ME3B 30 **** 99.0 Highly correlated
38 L1M4 29 n.s 99.0 Highly correlated
39 L1MB7 29 n.s 99.0 Highly correlated
40 L1MB2 28 ** 99.0 Highly correlated
41 L1MD2 28 * 99.0 Highly correlated
42 L1PB3 27 **** 74.0 Weakly correlated
43 L1ME4b 27 n.s 99.0 Highly correlated
44 L1MA7 27 ** 87.0 Weakly correlated
45 L1MB8 26 n.s 99.0 Highly correlated
46 L1HS 26 ** 8.6 Weakly correlated
47 L1M2 25 n.s 99.0 Highly correlated
48 L1MC5a 25 n.s 99.0 Highly correlated
49 L1MC2 24 ** 99.0 Highly correlated
50 L1MD1 23 * 99.0 Highly correlated
51 L1MA5A 22 **** 87.0 Weakly correlated
52 L1ME4a 22 n.s 99.0 Highly correlated
53 L1ME2 21 n.s 99.0 Highly correlated
54 L1MB5 20 n.s 99.0 Highly correlated
55 L1P2 20 *** 28.9 Weakly correlated
56 L1MA8 19 n.s 87.0 Weakly correlated
57 L1ME3F 19 **** 99.0 Highly correlated
58 L1MA1 19 n.s 74.0 Weakly correlated
59 L1MA4A 18 n.s 87.0 Weakly correlated
60 L1MD 17 * 99.0 Highly correlated
61 L1MA6 16 n.s 87.0 Weakly correlated
62 L1P 16 **** 19.6 Weakly correlated
63 L1MC 16 * 99.0 Highly correlated
64 L1M3 14 n.s 99.0 Highly correlated
65 L1ME3E 13 ** 99.0 Highly correlated
66 AluSx1 13 n.s 74.0 Weakly correlated
67 L1MC4a 13 n.s 99.0 Highly correlated
68 L1ME2z 12 n.s 99.0 Highly correlated
69 L1ME3D 12 * 99.0 Highly correlated
70 L1ME5 12 *** 99.0 Highly correlated
71 L1MB1 11 n.s 99.0 Highly correlated
72 L1M 10 **** 74.0 Weakly correlated
73 L1MC3 10 n.s 99.0 Highly correlated
74 L1ME3C 10 ** 99.0 Highly correlated
75 L2a 10 n.s 99.0 Highly correlated
76 L2c 10 n.s 99.0 Highly correlated
77 AluSx 8 n.s 74.0 Weakly correlated
78 L1MA5 8 n.s 87.0 Weakly correlated
79 L1M1 7 n.s 74.0 Weakly correlated
80 L1ME4c 7 n.s 99.0 Highly correlated
81 L1MEd 6 n.s 99.0 Highly correlated
82 AluSz 6 n.s 74.0 Weakly correlated
83 L1PB 6 n.s 74.0 Weakly correlated
84 MIR3 5 n.s 99.0 Highly correlated
85 L1MC4 5 n.s 99.0 Highly correlated
86 L1P4a 4 n.s 74.0 Weakly correlated
87 L1MA10 4 n.s 99.0 Highly correlated
88 L1M6 4 n.s 99.0 Highly correlated
89 MER11A 4 n.s 28.9 Weakly correlated
90 L1MEg 4 n.s 99.0 Highly correlated
91 L1PA15-16 4 n.s 74.0 Weakly correlated
92 AluSq 3 n.s 74.0 Weakly correlated
93 L1M4c 3 n.s 99.0 Highly correlated
94 L1MDa 3 n.s 99.0 Highly correlated
95 L1MEc 3 n.s 99.0 Highly correlated
96 AluSg 3 n.s 74.0 Weakly correlated
97 L1MEf 3 n.s 99.0 Highly correlated
98 L1P5 3 ** 74.0 Weakly correlated
99 AluSx3 3 n.s 74.0 Weakly correlated
100 L2b 3 n.s 99.0 Highly correlated
101 HAL1 2 n.s 99.0 Highly correlated
102 L1MCa 2 n.s 99.0 Highly correlated
103 L1MD3 2 n.s 99.0 Highly correlated
104 L1PBa 2 n.s 74.0 Weakly correlated
105 L3 2 n.s 99.0 Highly correlated
106 MLT1C 2 n.s 94.0 Weakly correlated
107 AluY 2 n.s 74.0 Weakly correlated
108 AluSq2 2 n.s 74.0 Weakly correlated
109 MLT1D 2 n.s 99.0 Highly correlated
110 MLT1G 2 n.s 99.0 Highly correlated
111 L1MDb 2 n.s 99.0 Highly correlated
112 AluSc5 2 n.s 74.0 Weakly correlated
113 MER61A 2 n.s 43.0 Weakly correlated
114 L1M3f 2 n.s 87.0 Weakly correlated
115 MLT1B 2 n.s 99.0 Highly correlated
116 AluSp 2 n.s 74.0 Weakly correlated
117 LTR16E2 2 n.s 99.0 Highly correlated
118 ERVL-B4-int 1 n.s 99.0 Highly correlated
119 L1M4b 1 n.s 99.0 Highly correlated
120 L1MEi 1 n.s 99.0 Highly correlated
121 L1P4b 1 n.s 74.0 Weakly correlated
122 LTR19B 1 n.s 43.0 Weakly correlated
123 LTR19C 1 * 43.0 Weakly correlated
124 L1M3e 1 n.s 99.0 Highly correlated
125 L1M4a1 1 n.s 99.0 Highly correlated
126 L1M4a2 1 n.s 99.0 Highly correlated
127 MIRb 1 n.s 99.0 Highly correlated
128 AluJb 1 n.s 74.0 Weakly correlated
129 L1MC5 1 n.s 99.0 Highly correlated
130 LTR35 1 ** 43.0 Weakly correlated
131 LTR50 1 n.s 99.0 Highly correlated
132 AluYb8 1 n.s 15.2 Weakly correlated
133 L2-1_AMi 1 n.s 319.0 Weakly correlated
134 MER11C 1 n.s 19.6 Weakly correlated
135 AluSc8 1 n.s 74.0 Weakly correlated
136 ERVL-E-int 1 n.s 99.0 Highly correlated
137 L2 1 n.s 99.0 Highly correlated
138 L4_A_Mam 1 n.s 99.0 Highly correlated
139 MER4E1 1 n.s 74.0 Weakly correlated
140 LTR43 1 n.s 74.0 Weakly correlated
141 MER11B 1 n.s 19.6 Weakly correlated
142 MIR 1 n.s 99.0 Highly correlated
143 MLT1I 1 n.s 99.0 Highly correlated
144 THE1B 1 n.s 43.0 Weakly correlated
145 Alu 1 n.s 74.0 Weakly correlated
146 AluJo 1 n.s 74.0 Weakly correlated
147 FLAM_C 1 n.s 74.0 Weakly correlated
148 L1M2c 1 n.s 87.0 Weakly correlated
149 MER39 1 n.s 74.0 Weakly correlated
150 L1PBa1 1 n.s 74.0 Weakly correlated
151 MIRc 1 n.s 99.0 Highly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ALUSX 74.0 Weakly correlated
2 ALUSX1 74.0 Weakly correlated
3 ALUSZ 74.0 Weakly correlated
4 L1HS 8.6 Weakly correlated
5 L1M3 99.0 Highly correlated
6 L1M4 99.0 Highly correlated
7 L1M5 99.0 Highly correlated
8 L1MA1 74.0 Weakly correlated
9 L1MA2 74.0 Weakly correlated
10 L1MA3 74.0 Weakly correlated
11 L1MA4 87.0 Weakly correlated
12 L1MA4A 87.0 Weakly correlated
13 L1MA5 87.0 Weakly correlated
14 L1MA5A 87.0 Weakly correlated
15 L1MA6 87.0 Weakly correlated
16 L1MA7 87.0 Weakly correlated
17 L1MA8 87.0 Weakly correlated
18 L1MA9 99.0 Highly correlated
19 L1MB1 99.0 Highly correlated
20 L1MB2 99.0 Highly correlated
21 L1MB3 99.0 Highly correlated
22 L1MB4 99.0 Highly correlated
23 L1MB5 99.0 Highly correlated
24 L1MB7 99.0 Highly correlated
25 L1MB8 99.0 Highly correlated
26 L1MC 99.0 Highly correlated
27 L1MC1 99.0 Highly correlated
28 L1MC2 99.0 Highly correlated
29 L1MC3 99.0 Highly correlated
30 L1MC4A 99.0 Highly correlated
31 L1MC5A 99.0 Highly correlated
32 L1MD 99.0 Highly correlated
33 L1MD1 99.0 Highly correlated
34 L1MD2 99.0 Highly correlated
35 L1ME1 99.0 Highly correlated
36 L1ME2 99.0 Highly correlated
37 L1ME2Z 99.0 Highly correlated
38 L1ME3 99.0 Highly correlated
39 L1ME3A 99.0 Highly correlated
40 L1ME3B 99.0 Highly correlated
41 L1ME3C 99.0 Highly correlated
42 L1ME3CZ 99.0 Highly correlated
43 L1ME3D 99.0 Highly correlated
44 L1ME3E 99.0 Highly correlated
45 L1ME3F 99.0 Highly correlated
46 L1ME3G 99.0 Highly correlated
47 L1ME4A 99.0 Highly correlated
48 L1ME4B 99.0 Highly correlated
49 L1ME4C 99.0 Highly correlated
50 L1ME5 99.0 Highly correlated
51 L1MED 99.0 Highly correlated
52 L1P1 19.6 Weakly correlated
53 L1P2 28.9 Weakly correlated
54 L1P4 74.0 Weakly correlated
55 L1PA10 74.0 Weakly correlated
56 L1PA11 74.0 Weakly correlated
57 L1PA12 74.0 Weakly correlated
58 L1PA13 74.0 Weakly correlated
59 L1PA14 74.0 Weakly correlated
60 L1PA15 74.0 Weakly correlated
61 L1PA16 74.0 Weakly correlated
62 L1PA17 74.0 Weakly correlated
63 L1PA2 15.2 Weakly correlated
64 L1PA3 19.6 Weakly correlated
65 L1PA4 19.6 Weakly correlated
66 L1PA5 19.6 Weakly correlated
67 L1PA6 28.9 Weakly correlated
68 L1PA7 74.0 Weakly correlated
69 L1PA8 74.0 Weakly correlated
70 L1PA8A 74.0 Weakly correlated
71 L1PB 74.0 Weakly correlated
72 L1PB1 74.0 Weakly correlated
73 L1PB2 74.0 Weakly correlated
74 L1PB3 74.0 Weakly correlated
75 L1PB4 99.0 Highly correlated
76 L1PREC2 43.0 Weakly correlated