ZRdb KZFP & Repeats
...

Human_ZNF823

  • Protein
    Zinc finger protein 823
  • Length
    610
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    69.0 Mya
  • Time of Changing in binding specificity
    43.0 Mya
  • Uniprot_ID
    P16415
  • NCBI_ID
    55552
Sequence:
MDSVAFEDVAVNFTQEEWALLGPSQKSLYRNVMQETIRNLDCIEMKWEDQNIGDQCQNAKRNLRSHTCEIKDDSQCGETFGQIPDSIVNKNTPRVNPCDSGECGEVVLGHSSLNCNIRVDTGHKSCEHQEYGEKPYTHKQRGKAISHQHSFQTHERPPTGKKPFDCKECAKTFSSLGNLRRHMAAHHGDGPYKCKLCGKAFVWPSLFHLHERTHTGEKPYECKQCSKAFPFYSSYLRHERIHTGEKAYECKQCSKAFPDYSTYLRHERTHTGEKPYKCTQCGKAFSCYYYTRLHERTHTGEQPYACKQCGKTFYHHTSFRRHMIRHTGDGPHKCKICGKGFDCPSSVRNHETTHTGEKPYECKQCGKVLSHSSSFRSHMITHTGDGPQKCKICGKAFGCPSLFQRHERTHTGEKPYQCKQCGKAFSLAGSLRRHEATHTGVKPYKCQCGKAFSDLSSFQNHETTHTGEKPYECKECGKAFSCFKYLSQHKRTHTVEKPYECKTCRKAFSHFSNLKVHERIHSGEKPYECKECGKAFSWLTCLLRHERIHTGEKPYECLQCGKAFTRSRFLRGHEKTHTGEKLYECKECGKALSSLRSLHRHKRTHWKDTL
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 4..97
2 C2h2 164..186
3 C2h2 192..214
4 C2h2 220..242
5 C2h2 248..270
6 C2h2 276..298
7 C2h2 304..326
8 C2h2 332..354
9 C2h2 360..382
10 C2h2 388..410
11 C2h2 416..438
12 C2h2 444..465
13 C2h2 471..493
14 C2h2 499..521
15 C2h2 527..549
16 C2h2 555..577
17 C2h2 583..605
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II transcription regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
...
Reverse:
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 LTR8 346 **** 43.0 Highly correlated
2 LTR26 192 **** 74.0 Weakly correlated
3 LTR8B 173 **** 43.0 Highly correlated
4 LTR8A 124 **** 43.0 Highly correlated
5 L2a 91 **** 99.0 Weakly correlated
6 AluSc 80 **** 74.0 Weakly correlated
7 L2c 56 ** 99.0 Weakly correlated
8 L2 48 **** 99.0 Weakly correlated
9 AluJb 39 n.s 74.0 Weakly correlated
10 AluSx 39 n.s 74.0 Weakly correlated
11 AluSx1 38 n.s 74.0 Weakly correlated
12 MIRb 37 n.s 99.0 Weakly correlated
13 L2b 34 * 99.0 Weakly correlated
14 MIR 29 n.s 99.0 Weakly correlated
15 AluSz 25 n.s 74.0 Weakly correlated
16 AluJo 24 n.s 74.0 Weakly correlated
17 HAL1 23 *** 99.0 Weakly correlated
18 LTR39 23 **** 43.0 Highly correlated
19 AluSz6 20 n.s 74.0 Weakly correlated
20 AluY 20 n.s 74.0 Weakly correlated
21 L1M5 20 n.s 99.0 Weakly correlated
22 L1MB7 20 n.s 99.0 Weakly correlated
23 L1MC4 19 * 99.0 Weakly correlated
24 LTR33 19 **** 99.0 Weakly correlated
25 AluJr 18 n.s 74.0 Weakly correlated
26 AluSc5 17 **** 74.0 Weakly correlated
27 MLT1A 17 **** 99.0 Weakly correlated
28 L1MEd 16 * 99.0 Weakly correlated
29 MLT1K 16 **** 99.0 Weakly correlated
30 MLT1D 15 * 99.0 Weakly correlated
31 AluSq2 14 n.s 74.0 Weakly correlated
32 HERVIP10FH-int 14 **** 28.9 Weakly correlated
33 HUERS-P1-int 14 **** 43.0 Highly correlated
34 L1ME1 14 n.s 99.0 Weakly correlated
35 L1MEc 14 n.s 99.0 Weakly correlated
36 L1MB8 13 n.s 99.0 Weakly correlated
37 AluSx3 12 n.s 74.0 Weakly correlated
38 L1M4 12 n.s 99.0 Weakly correlated
39 LTR26C 12 **** 0.0 Weakly correlated
40 LTR31 12 **** 74.0 Weakly correlated
41 MIR3 12 n.s 99.0 Weakly correlated
42 MLT1C 12 n.s 94.0 Weakly correlated
43 MLT1J 12 ** 99.0 Weakly correlated
44 L1MC1 11 n.s 99.0 Weakly correlated
45 L1ME4a 11 n.s 99.0 Weakly correlated
46 L1ME4b 11 n.s 99.0 Weakly correlated
47 MSTA 11 n.s 43.0 Highly correlated
48 AluSc8 10 n.s 74.0 Weakly correlated
49 AluSp 10 n.s 74.0 Weakly correlated
50 L1MB3 10 n.s 99.0 Weakly correlated
51 L1MEf 10 n.s 99.0 Weakly correlated
52 L1MEg 10 n.s 99.0 Weakly correlated
53 L3 10 n.s 99.0 Weakly correlated
54 MIRc 9 n.s 99.0 Weakly correlated
55 Harlequin-int 8 **** 74.0 Weakly correlated
56 L1MD2 8 n.s 99.0 Weakly correlated
57 MLT1B 8 n.s 99.0 Weakly correlated
58 L1MC4a 7 n.s 99.0 Weakly correlated
59 L1MCa 7 n.s 99.0 Weakly correlated
60 L1MDa 7 n.s 99.0 Weakly correlated
61 LTR33A_ 7 **** 99.0 Weakly correlated
62 MER21C 7 * 99.0 Weakly correlated
63 MLT1L 7 * 99.0 Weakly correlated
64 MLT2C1 7 **** 99.0 Weakly correlated
65 THE1B 7 n.s 43.0 Highly correlated
66 L1MC5 6 n.s 99.0 Weakly correlated
67 L1MD1 6 n.s 99.0 Weakly correlated
68 L1ME3 6 n.s 99.0 Weakly correlated
69 L1ME3B 6 n.s 99.0 Weakly correlated
70 L1PA15 6 n.s 74.0 Weakly correlated
71 L1PA16 6 n.s 74.0 Weakly correlated
72 L1PA5 6 n.s 19.6 Weakly correlated
73 L1PB4 6 n.s 99.0 Weakly correlated
74 LTR26E 6 **** 74.0 Weakly correlated
75 MSTB1 6 ** 74.0 Weakly correlated
76 THE1D 6 n.s 43.0 Highly correlated
77 AluSg 5 n.s 74.0 Weakly correlated
78 FLAM_C 5 n.s 74.0 Weakly correlated
79 HAL1b 5 * 99.0 Weakly correlated
80 HERV35I-int 5 **** 43.0 Highly correlated
81 L1M1 5 n.s 74.0 Weakly correlated
82 L1M2 5 n.s 99.0 Weakly correlated
83 L1MD3 5 * 99.0 Weakly correlated
84 L1ME3D 5 * 99.0 Weakly correlated
85 L1ME3G 5 n.s 99.0 Weakly correlated
86 MLT1F1 5 ** 99.0 Weakly correlated
87 MLT1F2 5 n.s 99.0 Weakly correlated
88 MLT1I 5 n.s 99.0 Weakly correlated
89 MSTB 5 n.s 43.0 Highly correlated
90 SVA_D 5 * 15.2 Weakly correlated
91 AluSg7 4 n.s 74.0 Weakly correlated
92 AluYc 4 * 74.0 Weakly correlated
93 HAL1ME 4 n.s 99.0 Weakly correlated
94 HERV17-int 4 ** 28.9 Weakly correlated
95 HERV9N-int 4 *** 19.6 Weakly correlated
96 L1M4b 4 n.s 99.0 Weakly correlated
97 L1M6 4 n.s 99.0 Weakly correlated
98 L1MA5 4 n.s 87.0 Weakly correlated
99 L1MB2 4 n.s 99.0 Weakly correlated
100 L1MC3 4 n.s 99.0 Weakly correlated
101 L1MD 4 n.s 99.0 Weakly correlated
102 L1ME3Cz 4 n.s 99.0 Weakly correlated
103 L1MEi 4 n.s 99.0 Weakly correlated
104 L1PA17 4 n.s 74.0 Weakly correlated
105 L3b 4 * 99.0 Weakly correlated
106 LTR26D 4 **** 0.0 Weakly correlated
107 LTR48 4 *** 74.0 Weakly correlated
108 LTR54 4 **** 74.0 Weakly correlated
109 LTR56 4 **** 74.0 Weakly correlated
110 MER4-int 4 n.s 74.0 Weakly correlated
111 MER50 4 * 43.0 Highly correlated
112 MER54A 4 *** 87.0 Weakly correlated
113 MLT1A0 4 n.s 99.0 Weakly correlated
114 MLT1E2 4 n.s 99.0 Weakly correlated
115 MLT1F 4 * 99.0 Weakly correlated
116 MLT1H 4 n.s 99.0 Weakly correlated
117 MLT1J1 4 * 99.0 Weakly correlated
118 MLT1O 4 ** 99.0 Weakly correlated
119 MLT2B3 4 * 99.0 Weakly correlated
120 MLT2B4 4 * 99.0 Weakly correlated
121 AluSq 3 n.s 74.0 Weakly correlated
122 AluSx4 3 n.s 74.0 Weakly correlated
123 ERVL-E-int 3 n.s 99.0 Weakly correlated
124 FLAM_A 3 n.s 74.0 Weakly correlated
125 FRAM 3 n.s 74.0 Weakly correlated
126 L1M2a 3 ** 87.0 Weakly correlated
127 L1M3 3 n.s 99.0 Weakly correlated
128 L1MA10 3 n.s 99.0 Weakly correlated
129 L1MA4 3 n.s 87.0 Weakly correlated
130 L1MA6 3 n.s 87.0 Weakly correlated
131 L1MA7 3 n.s 87.0 Weakly correlated
132 L1MA9 3 n.s 99.0 Weakly correlated
133 L1MC2 3 n.s 99.0 Weakly correlated
134 L1MC5a 3 n.s 99.0 Weakly correlated
135 L1ME2z 3 n.s 99.0 Weakly correlated
136 L1ME3A 3 n.s 99.0 Weakly correlated
137 L1P4 3 n.s 74.0 Weakly correlated
138 L1PA10 3 n.s 74.0 Weakly correlated
139 L1PA2 3 n.s 15.2 Weakly correlated
140 L1PA7 3 n.s 74.0 Weakly correlated
141 L1PB1 3 n.s 74.0 Weakly correlated
142 L1PBa 3 n.s 74.0 Weakly correlated
143 LTR10A 3 **** 28.9 Weakly correlated
144 LTR16C 3 n.s 99.0 Weakly correlated
145 LTR1D1 3 *** 43.0 Highly correlated
146 LTR26B 3 **** 74.0 Weakly correlated
147 LTR49 3 ** 74.0 Weakly correlated
148 LTR49-int 3 n.s 74.0 Weakly correlated
149 LTR50 3 * 99.0 Weakly correlated
150 MER21B 3 n.s 99.0 Weakly correlated
151 MER83 3 **** 43.0 Highly correlated
152 MIR1_Amn 3 n.s 319.0 Weakly correlated
153 MLT1A0-int 3 ** 99.0 Weakly correlated
154 MLT1G1 3 n.s 99.0 Weakly correlated
155 MLT1J2 3 n.s 99.0 Weakly correlated
156 MLT1N2 3 * 99.0 Weakly correlated
157 MLT2D 3 n.s 99.0 Weakly correlated
158 Alu 2 ** 74.0 Weakly correlated
159 AluYj4 2 n.s 0.0 Weakly correlated
160 AmnSINE1 2 ** 319.0 Weakly correlated
161 ERVL-B4-int 2 n.s 99.0 Weakly correlated
162 HERV9-int 2 n.s 28.9 Weakly correlated
163 HERVIP10F-int 2 * 28.9 Weakly correlated
164 HERVL-int 2 n.s 74.0 Weakly correlated
165 L1M4a1 2 n.s 99.0 Weakly correlated
166 L1M4c 2 n.s 99.0 Weakly correlated
167 L1M7 2 n.s 99.0 Weakly correlated
168 L1MA4A 2 n.s 87.0 Weakly correlated
169 L1MA8 2 n.s 87.0 Weakly correlated
170 L1MB1 2 n.s 99.0 Weakly correlated
171 L1MB4 2 n.s 99.0 Weakly correlated
172 L1MB5 2 n.s 99.0 Weakly correlated
173 L1MC 2 n.s 99.0 Weakly correlated
174 L1MCb 2 n.s 99.0 Weakly correlated
175 L1P1 2 n.s 19.6 Weakly correlated
176 L1P3 2 n.s 74.0 Weakly correlated
177 L1PA11 2 n.s 74.0 Weakly correlated
178 L1PA12 2 n.s 74.0 Weakly correlated
179 L1PA4 2 n.s 19.6 Weakly correlated
180 L1PA6 2 n.s 28.9 Weakly correlated
181 L1PB3 2 n.s 74.0 Weakly correlated
182 L1PREC2 2 n.s 43.0 Highly correlated
183 L2-1_AMi 2 ** 319.0 Weakly correlated
184 L2-3_Crp 2 * 431.0 Weakly correlated
185 LFSINE_Vert 2 ** 319.0 Weakly correlated
186 LTR12 2 * 28.9 Weakly correlated
187 LTR12C 2 n.s 19.6 Weakly correlated
188 LTR14A 2 **** 28.9 Weakly correlated
189 LTR16 2 n.s 99.0 Weakly correlated
190 LTR16A 2 n.s 99.0 Weakly correlated
191 LTR16B2 2 * 99.0 Weakly correlated
192 LTR16D 2 ** 99.0 Weakly correlated
193 LTR16E1 2 n.s 99.0 Weakly correlated
194 LTR1B 2 ** 43.0 Highly correlated
195 LTR33A 2 * 99.0 Weakly correlated
196 LTR48B 2 * 74.0 Weakly correlated
197 LTR54B 2 ** 74.0 Weakly correlated
198 LTR57 2 *** 74.0 Weakly correlated
199 LTR60B 2 *** 74.0 Weakly correlated
200 LTR67B 2 n.s 99.0 Weakly correlated
201 LTR78 2 n.s 99.0 Weakly correlated
202 LTR78B 2 n.s 99.0 Weakly correlated
203 LTR81A 2 ** 99.0 Weakly correlated
204 LTR85a 2 * 99.0 Weakly correlated
205 MER101-int 2 * 74.0 Weakly correlated
206 MER101B 2 *** 87.0 Weakly correlated
207 MER34A1 2 ** 99.0 Weakly correlated
208 MER39 2 n.s 74.0 Weakly correlated
209 MER39B 2 * 74.0 Weakly correlated
210 MER4A 2 * 74.0 Weakly correlated
211 MER4B 2 n.s 74.0 Weakly correlated
212 MER4D 2 * 74.0 Weakly correlated
213 MER4D1 2 n.s 74.0 Weakly correlated
214 MER51B 2 ** 43.0 Highly correlated
215 MER74A 2 * 99.0 Weakly correlated
216 MER84 2 *** 43.0 Highly correlated
217 MER89 2 * 99.0 Weakly correlated
218 MLT1A1 2 n.s 87.0 Weakly correlated
219 MLT1E2-int 2 **** 99.0 Weakly correlated
220 MLT1G3 2 n.s 99.0 Weakly correlated
221 MLT1J-int 2 * 99.0 Weakly correlated
222 MLT1M 2 * 99.0 Weakly correlated
223 MLT2B1 2 n.s 99.0 Weakly correlated
224 MSTB-int 2 n.s 43.0 Highly correlated
225 MSTB2 2 * 74.0 Weakly correlated
226 MSTD 2 n.s 74.0 Weakly correlated
227 THE1C-int 2 n.s 43.0 Highly correlated
228 AluJr4 1 n.s 74.0 Weakly correlated
229 AluYa5 1 n.s 15.2 Weakly correlated
230 AluYh3 1 n.s 15.2 Weakly correlated
231 AluYh9 1 *** 15.2 Weakly correlated
232 CR1-12_AMi 1 *** 319.0 Weakly correlated
233 ERV3-16A3_I-int 1 n.s 99.0 Weakly correlated
234 FAM 1 n.s 87.0 Weakly correlated
235 HAL1M8 1 n.s 99.0 Weakly correlated
236 HERV16-int 1 n.s 99.0 Weakly correlated
237 HERV9NC-int 1 n.s 19.6 Weakly correlated
238 HERVFH21-int 1 * 28.9 Weakly correlated
239 HERVI-int 1 * 28.9 Weakly correlated
240 HERVK-int 1 n.s 28.9 Weakly correlated
241 HERVK3-int 1 n.s 28.9 Weakly correlated
242 HUERS-P3b-int 1 n.s 43.0 Highly correlated
243 L1M3f 1 n.s 87.0 Weakly correlated
244 L1M6B 1 * 99.0 Weakly correlated
245 L1M8 1 n.s 99.0 Weakly correlated
246 L1MA3 1 n.s 74.0 Weakly correlated
247 L1MA5A 1 n.s 87.0 Weakly correlated
248 L1MCc 1 n.s 99.0 Weakly correlated
249 L1ME2 1 n.s 99.0 Weakly correlated
250 L1ME3E 1 n.s 99.0 Weakly correlated
251 L1ME3F 1 n.s 99.0 Weakly correlated
252 L1ME4c 1 n.s 99.0 Weakly correlated
253 L1MEb 1 n.s 99.0 Weakly correlated
254 L1MEh 1 n.s 99.0 Weakly correlated
255 L1MEj 1 n.s 99.0 Weakly correlated
256 L1PA14 1 n.s 74.0 Weakly correlated
257 L1PA3 1 n.s 19.6 Weakly correlated
258 L1PA8 1 n.s 74.0 Weakly correlated
259 L1PA8A 1 n.s 74.0 Weakly correlated
260 L4_B_Mam 1 n.s 99.0 Weakly correlated
261 LOR1-int 1 n.s 74.0 Weakly correlated
262 LOR1a 1 n.s 74.0 Weakly correlated
263 LTR103b_Mam 1 ** 99.0 Weakly correlated
264 LTR104_Mam 1 n.s 99.0 Weakly correlated
265 LTR10D 1 ** 28.9 Weakly correlated
266 LTR10F 1 * 28.9 Weakly correlated
267 LTR13 1 n.s 19.6 Weakly correlated
268 LTR14B 1 * 28.9 Weakly correlated
269 LTR16A2 1 n.s 99.0 Weakly correlated
270 LTR16D2 1 ** 99.0 Weakly correlated
271 LTR17 1 n.s 28.9 Weakly correlated
272 LTR18B 1 * 43.0 Highly correlated
273 LTR22B 1 ** 28.9 Weakly correlated
274 LTR27C 1 ** 43.0 Highly correlated
275 LTR28B 1 * 43.0 Highly correlated
276 LTR29 1 * 43.0 Highly correlated
277 LTR33B 1 n.s 99.0 Weakly correlated
278 LTR35 1 ** 43.0 Highly correlated
279 LTR35A 1 *** 43.0 Highly correlated
280 LTR37-int 1 n.s 99.0 Weakly correlated
281 LTR37A 1 n.s 99.0 Weakly correlated
282 LTR37B 1 n.s 99.0 Weakly correlated
283 LTR38 1 ** 74.0 Weakly correlated
284 LTR40b 1 n.s 99.0 Weakly correlated
285 LTR41 1 n.s 99.0 Weakly correlated
286 LTR41B 1 * 99.0 Weakly correlated
287 LTR53 1 * 99.0 Weakly correlated
288 LTR5A 1 n.s 19.6 Weakly correlated
289 LTR64 1 * 74.0 Weakly correlated
290 LTR71B 1 ** 43.0 Highly correlated
291 LTR72B 1 ** 74.0 Weakly correlated
292 LTR79 1 n.s 99.0 Weakly correlated
293 LTR81B 1 * 99.0 Weakly correlated
294 LTR82B 1 n.s 99.0 Weakly correlated
295 LTR85b 1 * 99.0 Weakly correlated
296 LTR85c 1 * 99.0 Weakly correlated
297 LTR88b 1 n.s 99.0 Weakly correlated
298 MER11A 1 n.s 28.9 Weakly correlated
299 MER21A 1 n.s 74.0 Weakly correlated
300 MER31B 1 n.s 99.0 Weakly correlated
301 MER34 1 n.s 87.0 Weakly correlated
302 MER34A 1 n.s 99.0 Weakly correlated
303 MER34C 1 ** 87.0 Weakly correlated
304 MER34C2 1 * 74.0 Weakly correlated
305 MER41-int 1 n.s 74.0 Weakly correlated
306 MER41A 1 n.s 74.0 Weakly correlated
307 MER41B 1 n.s 74.0 Weakly correlated
308 MER41G 1 ** 74.0 Weakly correlated
309 MER4B-int 1 n.s 99.0 Weakly correlated
310 MER4C 1 * 74.0 Weakly correlated
311 MER4D0 1 * 74.0 Weakly correlated
312 MER4E1 1 n.s 74.0 Weakly correlated
313 MER50-int 1 n.s 43.0 Highly correlated
314 MER57A-int 1 n.s 43.0 Highly correlated
315 MER57B1 1 n.s 43.0 Highly correlated
316 MER57D 1 * 87.0 Weakly correlated
317 MER57E2 1 *** 87.0 Weakly correlated
318 MER61B 1 * 43.0 Highly correlated
319 MER61D 1 ** 43.0 Highly correlated
320 MER61E 1 * 43.0 Highly correlated
321 MER65A 1 n.s 74.0 Weakly correlated
322 MER66D 1 ** 43.0 Highly correlated
323 MER67A 1 * 99.0 Weakly correlated
324 MER67B 1 * 99.0 Weakly correlated
325 MER67C 1 n.s 99.0 Weakly correlated
326 MER70C 1 ** 99.0 Weakly correlated
327 MER72 1 n.s 43.0 Highly correlated
328 MER72B 1 ** 43.0 Highly correlated
329 MER77 1 n.s 99.0 Weakly correlated
330 MER83B 1 ** 43.0 Highly correlated
331 MER87 1 ** 43.0 Highly correlated
332 MER87B 1 ** 74.0 Weakly correlated
333 MER92A 1 ** 99.0 Weakly correlated
334 MER92B 1 * 99.0 Weakly correlated
335 MLT1C-int 1 * 94.0 Weakly correlated
336 MLT1E1A 1 n.s 99.0 Weakly correlated
337 MLT1E3 1 n.s 99.0 Weakly correlated
338 MLT1G 1 n.s 99.0 Weakly correlated
339 MLT1H1 1 n.s 99.0 Weakly correlated
340 MLT1H1-int 1 * 99.0 Weakly correlated
341 MLT1I-int 1 n.s 99.0 Weakly correlated
342 MLT1J1-int 1 * 99.0 Weakly correlated
343 MLT1J2-int 1 * 99.0 Weakly correlated
344 MLT2C2 1 n.s 99.0 Weakly correlated
345 MST-int 1 ** 74.0 Weakly correlated
346 MSTA1 1 * 74.0 Weakly correlated
347 MSTC 1 n.s 74.0 Weakly correlated
348 MamGypLTR3 1 * 99.0 Weakly correlated
349 MamRTE1 1 n.s 99.0 Weakly correlated
350 PRIMA4-int 1 * 74.0 Weakly correlated
351 Plat_L3 1 n.s 99.0 Weakly correlated
352 SVA_A 1 n.s 19.6 Weakly correlated
353 SVA_B 1 n.s 15.2 Weakly correlated
354 SVA_C 1 n.s 15.2 Weakly correlated
355 SVA_F 1 n.s 0.0 Weakly correlated
356 THE1C 1 n.s 43.0 Highly correlated
357 THE1D-int 1 n.s 28.9 Weakly correlated
358 UCON86 1 **** 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 LTR8 334 **** 43.0 Highly correlated
2 LTR26 180 **** 74.0 Weakly correlated
3 LTR8B 160 **** 43.0 Highly correlated
4 LTR8A 114 **** 43.0 Highly correlated
5 AluSc 64 **** 74.0 Weakly correlated
6 L2a 32 n.s 99.0 Weakly correlated
7 L2c 18 n.s 99.0 Weakly correlated
8 AluSx 18 n.s 74.0 Weakly correlated
9 L2 16 n.s 99.0 Weakly correlated
10 AluSc5 15 **** 74.0 Weakly correlated
11 AluSx1 14 n.s 74.0 Weakly correlated
12 HAL1 13 n.s 99.0 Weakly correlated
13 HERVIP10FH-int 13 **** 28.9 Weakly correlated
14 L2b 12 n.s 99.0 Weakly correlated
15 LTR31 12 **** 74.0 Weakly correlated
16 LTR26C 12 **** 0.0 Weakly correlated
17 AluSz 10 n.s 74.0 Weakly correlated
18 AluJo 10 n.s 74.0 Weakly correlated
19 MLT1K 10 * 99.0 Weakly correlated
20 L1MEd 9 n.s 99.0 Weakly correlated
21 AluJb 9 n.s 74.0 Weakly correlated
22 MSTA 9 n.s 43.0 Highly correlated
23 LTR33 8 ** 99.0 Weakly correlated
24 Harlequin-int 8 **** 74.0 Weakly correlated
25 L1MC4 8 n.s 99.0 Weakly correlated
26 AluY 7 n.s 74.0 Weakly correlated
27 MLT1A 7 * 99.0 Weakly correlated
28 AluSz6 6 n.s 74.0 Weakly correlated
29 AluSx3 6 n.s 74.0 Weakly correlated
30 AluSc8 6 n.s 74.0 Weakly correlated
31 MLT1D 6 n.s 99.0 Weakly correlated
32 MIRb 6 n.s 99.0 Weakly correlated
33 LTR26E 6 **** 74.0 Weakly correlated
34 L1MD1 5 n.s 99.0 Weakly correlated
35 SVA_D 5 * 15.2 Weakly correlated
36 THE1B 5 n.s 43.0 Highly correlated
37 AluSq2 4 n.s 74.0 Weakly correlated
38 HERV9N-int 4 *** 19.6 Weakly correlated
39 THE1D 4 n.s 43.0 Highly correlated
40 L1MD2 4 n.s 99.0 Weakly correlated
41 L1ME4a 4 n.s 99.0 Weakly correlated
42 L1PB4 4 n.s 99.0 Weakly correlated
43 LTR26D 4 **** 0.0 Weakly correlated
44 L1ME1 4 n.s 99.0 Weakly correlated
45 HERV17-int 4 ** 28.9 Weakly correlated
46 L1MC5 4 n.s 99.0 Weakly correlated
47 L3 4 n.s 99.0 Weakly correlated
48 MIR 4 n.s 99.0 Weakly correlated
49 MLT2C1 4 ** 99.0 Weakly correlated
50 L1MB7 3 n.s 99.0 Weakly correlated
51 LTR26B 3 **** 74.0 Weakly correlated
52 L1M5 3 n.s 99.0 Weakly correlated
53 L1MC4a 3 n.s 99.0 Weakly correlated
54 L1MEg 3 n.s 99.0 Weakly correlated
55 MER54A 3 ** 87.0 Weakly correlated
56 MLT1B 3 n.s 99.0 Weakly correlated
57 AluJr 3 n.s 74.0 Weakly correlated
58 L1MEc 3 n.s 99.0 Weakly correlated
59 MLT1C 3 n.s 94.0 Weakly correlated
60 AluSg 3 n.s 74.0 Weakly correlated
61 L1M4 3 n.s 99.0 Weakly correlated
62 MLT1F1 3 * 99.0 Weakly correlated
63 MSTB1 3 n.s 74.0 Weakly correlated
64 AluSg7 3 n.s 74.0 Weakly correlated
65 MER83 3 **** 43.0 Highly correlated
66 MLT2B3 3 n.s 99.0 Weakly correlated
67 AluYc 3 * 74.0 Weakly correlated
68 L1MC1 3 n.s 99.0 Weakly correlated
69 L1PA16 3 n.s 74.0 Weakly correlated
70 MLT1E2 2 n.s 99.0 Weakly correlated
71 MLT1J 2 n.s 99.0 Weakly correlated
72 MLT2D 2 n.s 99.0 Weakly correlated
73 L1MD 2 n.s 99.0 Weakly correlated
74 MLT1O 2 n.s 99.0 Weakly correlated
75 L1M1 2 n.s 74.0 Weakly correlated
76 L1MDa 2 n.s 99.0 Weakly correlated
77 MIR3 2 n.s 99.0 Weakly correlated
78 MSTB 2 n.s 43.0 Highly correlated
79 AluSx4 2 n.s 74.0 Weakly correlated
80 L1MC2 2 n.s 99.0 Weakly correlated
81 L1ME4b 2 n.s 99.0 Weakly correlated
82 L1MEf 2 n.s 99.0 Weakly correlated
83 FLAM_A 2 n.s 74.0 Weakly correlated
84 L1M2 2 n.s 99.0 Weakly correlated
85 L1M4c 2 n.s 99.0 Weakly correlated
86 L1MEi 2 n.s 99.0 Weakly correlated
87 LTR33A 2 * 99.0 Weakly correlated
88 MLT1L 2 n.s 99.0 Weakly correlated
89 HAL1ME 2 n.s 99.0 Weakly correlated
90 HERV9-int 2 n.s 28.9 Weakly correlated
91 L1MD3 2 n.s 99.0 Weakly correlated
92 L1PA15 2 n.s 74.0 Weakly correlated
93 LTR33A_ 2 * 99.0 Weakly correlated
94 LTR50 2 n.s 99.0 Weakly correlated
95 Alu 1 * 74.0 Weakly correlated
96 L1M4b 1 n.s 99.0 Weakly correlated
97 L1MA9 1 n.s 99.0 Weakly correlated
98 L1ME3Cz 1 n.s 99.0 Weakly correlated
99 MER21C 1 n.s 99.0 Weakly correlated
100 MLT1G1 1 n.s 99.0 Weakly correlated
101 MLT1J2-int 1 * 99.0 Weakly correlated
102 AluYh3 1 n.s 15.2 Weakly correlated
103 HAL1M8 1 n.s 99.0 Weakly correlated
104 HERVK-int 1 n.s 28.9 Weakly correlated
105 L1M2a 1 n.s 87.0 Weakly correlated
106 L1MA4A 1 n.s 87.0 Weakly correlated
107 L1MA5 1 n.s 87.0 Weakly correlated
108 L1MCa 1 n.s 99.0 Weakly correlated
109 L1MCb 1 n.s 99.0 Weakly correlated
110 L1ME3G 1 n.s 99.0 Weakly correlated
111 L1PB3 1 n.s 74.0 Weakly correlated
112 LTR14B 1 * 28.9 Weakly correlated
113 LTR79 1 n.s 99.0 Weakly correlated
114 MIRc 1 n.s 99.0 Weakly correlated
115 MSTA1 1 * 74.0 Weakly correlated
116 MSTD 1 n.s 74.0 Weakly correlated
117 SVA_A 1 n.s 19.6 Weakly correlated
118 SVA_F 1 n.s 0.0 Weakly correlated
119 AluSq 1 n.s 74.0 Weakly correlated
120 HERVIP10F-int 1 n.s 28.9 Weakly correlated
121 L1PBa 1 n.s 74.0 Weakly correlated
122 L2-3_Crp 1 n.s 431.0 Weakly correlated
123 LTR16A 1 n.s 99.0 Weakly correlated
124 MER34A1 1 * 99.0 Weakly correlated
125 MER83B 1 ** 43.0 Highly correlated
126 MLT1A1 1 n.s 87.0 Weakly correlated
127 MLT1G 1 n.s 99.0 Weakly correlated
128 THE1C-int 1 n.s 43.0 Highly correlated
129 ERVL-E-int 1 n.s 99.0 Weakly correlated
130 HAL1b 1 n.s 99.0 Weakly correlated
131 HERV9NC-int 1 n.s 19.6 Weakly correlated
132 L1MA4 1 n.s 87.0 Weakly correlated
133 L1MC5a 1 n.s 99.0 Weakly correlated
134 L1ME3F 1 n.s 99.0 Weakly correlated
135 L1PA17 1 n.s 74.0 Weakly correlated
136 L1PA8A 1 n.s 74.0 Weakly correlated
137 L1PB1 1 n.s 74.0 Weakly correlated
138 LTR16C 1 n.s 99.0 Weakly correlated
139 LTR16D 1 * 99.0 Weakly correlated
140 LTR49 1 n.s 74.0 Weakly correlated
141 MER4-int 1 n.s 74.0 Weakly correlated
142 MLT2B4 1 n.s 99.0 Weakly correlated
143 MSTB-int 1 n.s 43.0 Highly correlated
144 HERVFH21-int 1 * 28.9 Weakly correlated
145 HERVL-int 1 n.s 74.0 Weakly correlated
146 L1M3 1 n.s 99.0 Weakly correlated
147 L1M3f 1 n.s 87.0 Weakly correlated
148 L1P1 1 n.s 19.6 Weakly correlated
149 L1PA11 1 n.s 74.0 Weakly correlated
150 LTR16E1 1 n.s 99.0 Weakly correlated
151 LTR1B 1 * 43.0 Highly correlated
152 LTR35 1 ** 43.0 Highly correlated
153 LTR37-int 1 n.s 99.0 Weakly correlated
154 LTR5A 1 n.s 19.6 Weakly correlated
155 MER39 1 n.s 74.0 Weakly correlated
156 MLT1I-int 1 n.s 99.0 Weakly correlated
157 Plat_L3 1 n.s 99.0 Weakly correlated
158 CR1-12_AMi 1 *** 319.0 Weakly correlated
159 FLAM_C 1 n.s 74.0 Weakly correlated
160 HUERS-P1-int 1 n.s 43.0 Highly correlated
161 L1ME2z 1 n.s 99.0 Weakly correlated
162 L1PA5 1 n.s 19.6 Weakly correlated
163 L2-1_AMi 1 * 319.0 Weakly correlated
164 LTR39 1 n.s 43.0 Highly correlated
165 LTR48B 1 n.s 74.0 Weakly correlated
166 LTR78B 1 n.s 99.0 Weakly correlated
167 MER57B1 1 n.s 43.0 Highly correlated
168 MER92A 1 ** 99.0 Weakly correlated
169 MLT1J1 1 n.s 99.0 Weakly correlated
170 MLT1J1-int 1 * 99.0 Weakly correlated
171 AluSp 1 n.s 74.0 Weakly correlated
172 FRAM 1 n.s 74.0 Weakly correlated
173 L1M6 1 n.s 99.0 Weakly correlated
174 L1MA10 1 n.s 99.0 Weakly correlated
175 L1MEh 1 n.s 99.0 Weakly correlated
176 LTR81A 1 * 99.0 Weakly correlated
177 MIR1_Amn 1 n.s 319.0 Weakly correlated
178 MLT1J-int 1 n.s 99.0 Weakly correlated
179 SVA_B 1 n.s 15.2 Weakly correlated
180 AluYh9 1 *** 15.2 Weakly correlated
181 L1M4a1 1 n.s 99.0 Weakly correlated
182 L1M6B 1 * 99.0 Weakly correlated
183 L1MB3 1 n.s 99.0 Weakly correlated
184 L1MC3 1 n.s 99.0 Weakly correlated
185 LTR14A 1 ** 28.9 Weakly correlated
186 LTR29 1 * 43.0 Highly correlated
187 LTR54 1 n.s 74.0 Weakly correlated
188 LTR60B 1 ** 74.0 Weakly correlated
189 MLT1E2-int 1 ** 99.0 Weakly correlated
190 MLT1G3 1 n.s 99.0 Weakly correlated
191 MLT2B1 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 HERVIP10FH-INT 28.9 Weakly correlated
2 HARLEQUIN-INT 74.0 Weakly correlated
3 L2 99.0 Weakly correlated
4 L2A 99.0 Weakly correlated
5 L2B 99.0 Weakly correlated
6 LTR26 74.0 Weakly correlated
7 LTR26C 0.0 Weakly correlated
8 LTR26E 74.0 Weakly correlated
9 LTR31 74.0 Weakly correlated
10 LTR33 99.0 Weakly correlated
11 LTR8 43.0 Highly correlated
12 LTR8A 43.0 Highly correlated
13 LTR8B 43.0 Highly correlated
14 MSTA 43.0 Highly correlated