ZRdb KZFP & Repeats
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Human_ZNF8

  • Protein
    Zinc finger protein 8
  • Length
    575
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    P17098
  • NCBI_ID
    7554
Sequence:
MDPEDEGVAGVMSVGPPAARLQEPVTFRDVAVDFTQEEWGQLDPTQRILYRDVMLETFGHLLSIGPELPKPEVISQLEQGTELWVAERGTTQGCHPAWEPRSESQASRKEEGLPEEEPSHVTGREGFPTDAPYPTTLGKDRECQSQSLALKEQNNLKQLEFGLKEAPVQDQGYKTLRLRENCVLSSSPNPFPEISRGEYLYTYDSQITDSEHNSSLVSQQTGSPGKQPGENSDCHRDSSQAIPITELTKSQVQDKPYKCTDCGKSFNHNAHLTVHKRIHTGERPYMCKECGKAFSQNSSLVQHERIHTGDKPYKCAECGKSFCHSTHLTVHRRIHTGEKPYECQDCGRAFNQNSSLGRHKRTHTGEKPYTCSVCGKSFSRTTCLFLHLRTHTEERPYECNHCGKGFRHSSSLAQHQRKHAGEKPFECRQRLIFEQTPALTKHEWTEALGCDPPLSQDERTHRSDRPFKCNQCGKCFIQSSHLIRHQITHTREEQPHGRSRRREQSSSRNSHLVQHQHPNSRKSSAGGAKAGQPESRALALFDIQKIMQEKNPVHVIGVEEPSVGASMLFDIREST
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 25..96
2 C2h2 257..279
3 C2h2 285..307
4 C2h2 313..335
5 C2h2 341..363
6 C2h2 369..391
7 C2h2 397..419
8 C2h2 467..489
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA binding
3 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Molecular Function zinc ion binding
6 Biological Process BMP signaling pathway
7 Biological Process negative regulation of transcription by RNA polymerase II
8 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1MB7 631 **** 99.0 Highly correlated
2 L1ME1 510 **** 99.0 Highly correlated
3 L1MB8 338 **** 99.0 Highly correlated
4 L1MB5 285 **** 99.0 Highly correlated
5 AluSx 215 * 74.0 Weakly correlated
6 AluSx1 175 n.s 74.0 Weakly correlated
7 L1MB3 169 **** 99.0 Highly correlated
8 L2a 164 n.s 99.0 Highly correlated
9 AluJb 152 n.s 74.0 Weakly correlated
10 L1MD2 147 **** 99.0 Highly correlated
11 AluSz 143 n.s 74.0 Weakly correlated
12 L1PA16 139 **** 74.0 Weakly correlated
13 L1PA13 134 **** 74.0 Weakly correlated
14 AluY 130 n.s 74.0 Weakly correlated
15 L1MC1 130 **** 99.0 Highly correlated
16 L2b 123 * 99.0 Highly correlated
17 L2c 114 n.s 99.0 Highly correlated
18 MIRb 113 n.s 99.0 Highly correlated
19 L1MA3 110 **** 74.0 Weakly correlated
20 L1PREC2 110 **** 43.0 Weakly correlated
21 L1PA15 106 **** 74.0 Weakly correlated
22 AluSq2 102 n.s 74.0 Weakly correlated
23 L1PB1 102 ** 74.0 Weakly correlated
24 MIR 102 n.s 99.0 Highly correlated
25 AluJo 97 n.s 74.0 Weakly correlated
26 AluJr 97 n.s 74.0 Weakly correlated
27 L1PA10 92 **** 74.0 Weakly correlated
28 L1MB4 88 **** 99.0 Highly correlated
29 L1MA2 81 **** 74.0 Weakly correlated
30 L1MB2 78 **** 99.0 Highly correlated
31 AluSp 77 n.s 74.0 Weakly correlated
32 L1ME2 75 **** 99.0 Highly correlated
33 AluSg 74 n.s 74.0 Weakly correlated
34 L1MC4 74 *** 99.0 Highly correlated
35 L1MC2 72 **** 99.0 Highly correlated
36 AluSx3 70 ** 74.0 Weakly correlated
37 L1MD1 70 **** 99.0 Highly correlated
38 MIRc 69 n.s 99.0 Highly correlated
39 L1ME4b 68 **** 99.0 Highly correlated
40 L2 65 n.s 99.0 Highly correlated
41 L1PA14 63 **** 74.0 Weakly correlated
42 L1MA4 62 *** 87.0 Weakly correlated
43 L1MA1 61 **** 74.0 Weakly correlated
44 MIR3 59 n.s 99.0 Highly correlated
45 L1PA11 55 **** 74.0 Weakly correlated
46 AluSc 52 n.s 74.0 Weakly correlated
47 L1MC3 50 n.s 99.0 Highly correlated
48 AluSz6 49 n.s 74.0 Weakly correlated
49 L1PA17 47 **** 74.0 Weakly correlated
50 L1PA7 44 n.s 74.0 Weakly correlated
51 L1PA8 40 n.s 74.0 Weakly correlated
52 AluSq 38 n.s 74.0 Weakly correlated
53 AluSc8 37 n.s 74.0 Weakly correlated
54 L1MEd 36 n.s 99.0 Highly correlated
55 L1PB4 35 * 99.0 Highly correlated
56 L1M5 34 n.s 99.0 Highly correlated
57 FLAM_C 33 *** 74.0 Weakly correlated
58 L1ME3 33 ** 99.0 Highly correlated
59 L1MA8 32 n.s 87.0 Weakly correlated
60 L1PA8A 32 ** 74.0 Weakly correlated
61 L1PA12 31 **** 74.0 Weakly correlated
62 L1M4 30 n.s 99.0 Highly correlated
63 L1MA9 30 n.s 99.0 Highly correlated
64 L1MC4a 30 * 99.0 Highly correlated
65 HAL1 26 n.s 99.0 Highly correlated
66 L1MA7 26 n.s 87.0 Weakly correlated
67 L1ME4a 26 n.s 99.0 Highly correlated
68 LTR8 26 **** 43.0 Weakly correlated
69 L1MC5a 25 n.s 99.0 Highly correlated
70 AluJr4 24 n.s 74.0 Weakly correlated
71 L1MA4A 24 n.s 87.0 Weakly correlated
72 L1ME3A 24 n.s 99.0 Highly correlated
73 L1ME3G 24 n.s 99.0 Highly correlated
74 LTR10A 24 **** 28.9 Weakly correlated
75 L1ME2z 23 ** 99.0 Highly correlated
76 L1PB3 23 * 74.0 Weakly correlated
77 L1MEg 21 n.s 99.0 Highly correlated
78 L1PA6 20 n.s 28.9 Weakly correlated
79 MER4-int 20 ** 74.0 Weakly correlated
80 PRIMA4-int 19 **** 74.0 Weakly correlated
81 FRAM 18 **** 74.0 Weakly correlated
82 L1MA6 18 n.s 87.0 Weakly correlated
83 L1MD3 17 * 99.0 Highly correlated
84 L1PA5 17 n.s 19.6 Weakly correlated
85 MLT1C 17 n.s 94.0 Weakly correlated
86 L1MB1 16 n.s 99.0 Highly correlated
87 L1MC5 16 n.s 99.0 Highly correlated
88 L1MEf 16 n.s 99.0 Highly correlated
89 L3 16 n.s 99.0 Highly correlated
90 AluSg7 15 n.s 74.0 Weakly correlated
91 AluYj4 15 **** 0.0 Weakly correlated
92 L1MA5A 15 n.s 87.0 Weakly correlated
93 L1MEc 15 n.s 99.0 Highly correlated
94 L1PA4 15 n.s 19.6 Weakly correlated
95 L1M3 14 n.s 99.0 Highly correlated
96 L1P3 14 n.s 74.0 Weakly correlated
97 L1P4 14 n.s 74.0 Weakly correlated
98 L1MA5 13 n.s 87.0 Weakly correlated
99 L1PA2 13 n.s 15.2 Weakly correlated
100 LTR76 13 **** 74.0 Weakly correlated
101 LTR7C 13 **** 28.9 Weakly correlated
102 MIR1_Amn 13 ** 319.0 Weakly correlated
103 AluSx4 12 n.s 74.0 Weakly correlated
104 HERVIP10FH-int 12 **** 28.9 Weakly correlated
105 L1ME3B 12 n.s 99.0 Highly correlated
106 L1PB2 12 n.s 74.0 Weakly correlated
107 LTR10F 12 **** 28.9 Weakly correlated
108 MLT1D 12 n.s 99.0 Highly correlated
109 MSTD 12 n.s 74.0 Weakly correlated
110 FLAM_A 11 n.s 74.0 Weakly correlated
111 L1MD 11 n.s 99.0 Highly correlated
112 MLT2D 11 * 99.0 Highly correlated
113 L1M1 10 n.s 74.0 Weakly correlated
114 L1ME3F 10 n.s 99.0 Highly correlated
115 MLT1I 10 n.s 99.0 Highly correlated
116 MLT1K 10 n.s 99.0 Highly correlated
117 AluSg4 9 n.s 74.0 Weakly correlated
118 L1ME4c 9 n.s 99.0 Highly correlated
119 L1PA3 8 n.s 19.6 Weakly correlated
120 LTR1A2 8 ** 43.0 Weakly correlated
121 MLT1B 8 n.s 99.0 Highly correlated
122 MLT2B3 8 n.s 99.0 Highly correlated
123 MamRTE1 8 n.s 99.0 Highly correlated
124 AluYa5 7 n.s 15.2 Weakly correlated
125 L1M2 7 n.s 99.0 Highly correlated
126 L1ME3E 7 n.s 99.0 Highly correlated
127 L1P1 7 n.s 19.6 Weakly correlated
128 MER50 7 n.s 43.0 Weakly correlated
129 MER50-int 7 ** 43.0 Weakly correlated
130 MER66B 7 ** 43.0 Weakly correlated
131 MLT1H 7 n.s 99.0 Highly correlated
132 MLT1J2 7 n.s 99.0 Highly correlated
133 MSTA 7 n.s 43.0 Weakly correlated
134 THE1B 7 n.s 43.0 Weakly correlated
135 AluYm1 6 n.s 19.6 Weakly correlated
136 ERVL-E-int 6 n.s 99.0 Highly correlated
137 HAL1b 6 n.s 99.0 Highly correlated
138 HUERS-P3-int 6 n.s 43.0 Weakly correlated
139 L1HS 6 n.s 8.6 Weakly correlated
140 LTR13 6 * 19.6 Weakly correlated
141 LTR41B 6 *** 99.0 Highly correlated
142 MER11A 6 n.s 28.9 Weakly correlated
143 MLT1A0 6 n.s 99.0 Highly correlated
144 MLT1F1 6 n.s 99.0 Highly correlated
145 MSTB1 6 n.s 74.0 Weakly correlated
146 Alu 5 ** 74.0 Weakly correlated
147 AluSc5 5 n.s 74.0 Weakly correlated
148 AluSq10 5 n.s 74.0 Weakly correlated
149 ERVL-B4-int 5 n.s 99.0 Highly correlated
150 FAM 5 n.s 87.0 Weakly correlated
151 L1M4a1 5 n.s 99.0 Highly correlated
152 L1M4b 5 n.s 99.0 Highly correlated
153 L1M4c 5 n.s 99.0 Highly correlated
154 L1ME3C 5 n.s 99.0 Highly correlated
155 L1MEi 5 n.s 99.0 Highly correlated
156 L3b 5 n.s 99.0 Highly correlated
157 LTR18A 5 **** 43.0 Weakly correlated
158 LTR90A 5 **** 99.0 Highly correlated
159 MER21B 5 n.s 99.0 Highly correlated
160 MER57-int 5 n.s 87.0 Weakly correlated
161 MER77B 5 n.s 99.0 Highly correlated
162 MLT1A 5 n.s 99.0 Highly correlated
163 MLT1G3 5 n.s 99.0 Highly correlated
164 MSTC 5 n.s 74.0 Weakly correlated
165 HERV17-int 4 n.s 28.9 Weakly correlated
166 HERVL74-int 4 ** 99.0 Highly correlated
167 L1MA10 4 n.s 99.0 Highly correlated
168 L1MC 4 n.s 99.0 Highly correlated
169 L1MDb 4 n.s 99.0 Highly correlated
170 L1PB 4 n.s 74.0 Weakly correlated
171 LTR16A 4 n.s 99.0 Highly correlated
172 LTR25-int 4 n.s 43.0 Weakly correlated
173 LTR33 4 n.s 99.0 Highly correlated
174 LTR4 4 **** 28.9 Weakly correlated
175 LTR53-int 4 ** 99.0 Highly correlated
176 LTR88b 4 * 99.0 Highly correlated
177 MER21C 4 n.s 99.0 Highly correlated
178 MLT1D-int 4 * 99.0 Highly correlated
179 MLT1L 4 n.s 99.0 Highly correlated
180 MLT1N2 4 n.s 99.0 Highly correlated
181 MLT2B4 4 n.s 99.0 Highly correlated
182 MSTB 4 n.s 43.0 Weakly correlated
183 AluYc 3 n.s 74.0 Weakly correlated
184 AluYf1 3 n.s 19.6 Weakly correlated
185 AluYh9 3 **** 15.2 Weakly correlated
186 AluYk2 3 n.s 19.6 Weakly correlated
187 HAL1M8 3 n.s 99.0 Highly correlated
188 HAL1ME 3 n.s 99.0 Highly correlated
189 HERV15-int 3 * 28.9 Weakly correlated
190 HERV9-int 3 n.s 28.9 Weakly correlated
191 HERVH-int 3 n.s 28.9 Weakly correlated
192 HERVH48-int 3 * 28.9 Weakly correlated
193 L1M3f 3 n.s 87.0 Weakly correlated
194 L1MCa 3 n.s 99.0 Highly correlated
195 L1MCb 3 n.s 99.0 Highly correlated
196 L1ME3Cz 3 n.s 99.0 Highly correlated
197 L2-3_Crp 3 n.s 431.0 Weakly correlated
198 LTR16B2 3 n.s 99.0 Highly correlated
199 LTR16C 3 n.s 99.0 Highly correlated
200 LTR26 3 n.s 74.0 Weakly correlated
201 LTR41C 3 * 99.0 Highly correlated
202 LTR47B4 3 **** 74.0 Weakly correlated
203 LTR67B 3 n.s 99.0 Highly correlated
204 LTR8B 3 n.s 43.0 Weakly correlated
205 MER39B 3 n.s 74.0 Weakly correlated
206 MER41-int 3 n.s 74.0 Weakly correlated
207 MER54B 3 * 87.0 Weakly correlated
208 MLT1F2 3 n.s 99.0 Highly correlated
209 MLT2B1 3 n.s 99.0 Highly correlated
210 MLT2C1 3 n.s 99.0 Highly correlated
211 MamGypLTR3a 3 n.s 99.0 Highly correlated
212 MamRep1151 3 n.s 99.0 Highly correlated
213 SVA_A 3 n.s 19.6 Weakly correlated
214 THE1C 3 n.s 43.0 Weakly correlated
215 AluYh3a3 2 ** 15.2 Weakly correlated
216 AmnSINE1 2 n.s 319.0 Weakly correlated
217 CR1_Mam 2 n.s 99.0 Highly correlated
218 ERV24B_Prim-int 2 n.s 74.0 Weakly correlated
219 ERV3-16A3_I-int 2 n.s 99.0 Highly correlated
220 HERV3-int 2 n.s 28.9 Weakly correlated
221 HERVFH21-int 2 n.s 28.9 Weakly correlated
222 L1M3e 2 n.s 99.0 Highly correlated
223 L1MDa 2 n.s 99.0 Highly correlated
224 L1ME3D 2 n.s 99.0 Highly correlated
225 L1MEg2 2 n.s 99.0 Highly correlated
226 L1P2 2 n.s 28.9 Weakly correlated
227 L1P4a 2 n.s 74.0 Weakly correlated
228 L1PA15-16 2 n.s 74.0 Weakly correlated
229 LOR1-int 2 n.s 74.0 Weakly correlated
230 LTR10D 2 * 28.9 Weakly correlated
231 LTR16 2 n.s 99.0 Highly correlated
232 LTR16D 2 n.s 99.0 Highly correlated
233 LTR19A 2 n.s 43.0 Weakly correlated
234 LTR19C 2 ** 43.0 Weakly correlated
235 LTR2752 2 n.s 43.0 Weakly correlated
236 LTR27E 2 n.s 43.0 Weakly correlated
237 LTR3 2 ** 28.9 Weakly correlated
238 LTR52 2 n.s 99.0 Highly correlated
239 LTR55 2 n.s 99.0 Highly correlated
240 LTR75B 2 ** 99.0 Highly correlated
241 LTR81A 2 n.s 99.0 Highly correlated
242 LTR88a 2 * 99.0 Highly correlated
243 MER101-int 2 n.s 74.0 Weakly correlated
244 MER110 2 n.s 99.0 Highly correlated
245 MER11C 2 n.s 19.6 Weakly correlated
246 MER41A 2 n.s 74.0 Weakly correlated
247 MER4B-int 2 n.s 99.0 Highly correlated
248 MER65A 2 n.s 74.0 Weakly correlated
249 MER74A 2 n.s 99.0 Highly correlated
250 MER89 2 n.s 99.0 Highly correlated
251 MLT1A1 2 n.s 87.0 Weakly correlated
252 MLT1E2 2 n.s 99.0 Highly correlated
253 MLT1F 2 n.s 99.0 Highly correlated
254 MLT1G1 2 n.s 99.0 Highly correlated
255 MLT1J 2 n.s 99.0 Highly correlated
256 MLT2B2 2 n.s 99.0 Highly correlated
257 MLT2C2 2 n.s 99.0 Highly correlated
258 MamGypLTR3 2 * 99.0 Highly correlated
259 SVA_C 2 n.s 15.2 Weakly correlated
260 SVA_D 2 n.s 15.2 Weakly correlated
261 THE1D 2 n.s 43.0 Weakly correlated
262 AluSq4 1 n.s 74.0 Weakly correlated
263 AluYa8 1 * 15.2 Weakly correlated
264 AluYb8 1 n.s 15.2 Weakly correlated
265 AluYb9 1 n.s 15.2 Weakly correlated
266 AluYc3 1 n.s 74.0 Weakly correlated
267 AluYe5 1 n.s 74.0 Weakly correlated
268 AluYh3 1 n.s 15.2 Weakly correlated
269 AluYk4 1 n.s 15.2 Weakly correlated
270 CR1-L3A_Croc 1 * 319.0 Weakly correlated
271 ERV24_Prim-int 1 n.s 74.0 Weakly correlated
272 ERV3-16A3_LTR 1 n.s 99.0 Highly correlated
273 ERVL-int 1 n.s 99.0 Highly correlated
274 HERV-Fc2-int 1 ** 15.2 Weakly correlated
275 HERV16-int 1 n.s 99.0 Highly correlated
276 HERV9N-int 1 n.s 19.6 Weakly correlated
277 HERVIP10F-int 1 n.s 28.9 Weakly correlated
278 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
279 Harlequin-int 1 n.s 74.0 Weakly correlated
280 L1M 1 n.s 74.0 Weakly correlated
281 L1M2a 1 n.s 87.0 Weakly correlated
282 L1M3d 1 n.s 99.0 Highly correlated
283 L1M4a2 1 n.s 99.0 Highly correlated
284 L1M6 1 n.s 99.0 Highly correlated
285 L1M7 1 n.s 99.0 Highly correlated
286 L1M8 1 n.s 99.0 Highly correlated
287 L1MCc 1 n.s 99.0 Highly correlated
288 L1ME5 1 n.s 99.0 Highly correlated
289 L2-1_AMi 1 n.s 319.0 Weakly correlated
290 L4_A_Mam 1 n.s 99.0 Highly correlated
291 L4_C_Mam 1 n.s 99.0 Highly correlated
292 L5 1 n.s 99.0 Highly correlated
293 LFSINE_Vert 1 n.s 319.0 Weakly correlated
294 LOR1a 1 n.s 74.0 Weakly correlated
295 LTR10B 1 * 28.9 Weakly correlated
296 LTR10G 1 * 28.9 Weakly correlated
297 LTR12C 1 n.s 19.6 Weakly correlated
298 LTR12D 1 n.s 19.6 Weakly correlated
299 LTR12F 1 n.s 28.9 Weakly correlated
300 LTR16B 1 n.s 99.0 Highly correlated
301 LTR16D1 1 * 99.0 Highly correlated
302 LTR16E2 1 n.s 99.0 Highly correlated
303 LTR19B 1 n.s 43.0 Weakly correlated
304 LTR22A 1 n.s 43.0 Weakly correlated
305 LTR23 1 n.s 74.0 Weakly correlated
306 LTR25 1 n.s 43.0 Weakly correlated
307 LTR28C 1 n.s 43.0 Weakly correlated
308 LTR33A_ 1 n.s 99.0 Highly correlated
309 LTR33B 1 n.s 99.0 Highly correlated
310 LTR35A 1 * 43.0 Weakly correlated
311 LTR35B 1 * 43.0 Weakly correlated
312 LTR37-int 1 n.s 99.0 Highly correlated
313 LTR39-int 1 * 43.0 Weakly correlated
314 LTR3B 1 * 28.9 Weakly correlated
315 LTR3B_ 1 n.s 28.9 Weakly correlated
316 LTR40b 1 n.s 99.0 Highly correlated
317 LTR40c 1 n.s 99.0 Highly correlated
318 LTR45B 1 n.s 74.0 Weakly correlated
319 LTR47A2 1 n.s 74.0 Weakly correlated
320 LTR48 1 n.s 74.0 Weakly correlated
321 LTR49-int 1 n.s 74.0 Weakly correlated
322 LTR56 1 n.s 74.0 Weakly correlated
323 LTR5A 1 n.s 19.6 Weakly correlated
324 LTR65 1 n.s 99.0 Highly correlated
325 LTR7 1 n.s 19.6 Weakly correlated
326 LTR78 1 n.s 99.0 Highly correlated
327 LTR78B 1 n.s 99.0 Highly correlated
328 LTR79 1 n.s 99.0 Highly correlated
329 LTR81 1 n.s 99.0 Highly correlated
330 LTR82B 1 n.s 99.0 Highly correlated
331 LTR84a 1 n.s 99.0 Highly correlated
332 LTR85c 1 n.s 99.0 Highly correlated
333 LTR86A2 1 n.s 99.0 Highly correlated
334 LTR9 1 n.s 43.0 Weakly correlated
335 LTR9D 1 n.s 43.0 Weakly correlated
336 MER11B 1 n.s 19.6 Weakly correlated
337 MER21-int 1 n.s 99.0 Highly correlated
338 MER21A 1 n.s 74.0 Weakly correlated
339 MER34B 1 n.s 87.0 Weakly correlated
340 MER34D 1 n.s 74.0 Weakly correlated
341 MER39 1 n.s 74.0 Weakly correlated
342 MER41B 1 n.s 74.0 Weakly correlated
343 MER41D 1 n.s 74.0 Weakly correlated
344 MER4A 1 n.s 74.0 Weakly correlated
345 MER4A1 1 n.s 74.0 Weakly correlated
346 MER4B 1 n.s 74.0 Weakly correlated
347 MER4C 1 n.s 74.0 Weakly correlated
348 MER51-int 1 n.s 43.0 Weakly correlated
349 MER52-int 1 n.s 99.0 Highly correlated
350 MER52D 1 n.s 74.0 Weakly correlated
351 MER54A 1 n.s 87.0 Weakly correlated
352 MER57A-int 1 n.s 43.0 Weakly correlated
353 MER61-int 1 n.s 43.0 Weakly correlated
354 MER61D 1 n.s 43.0 Weakly correlated
355 MER65C 1 n.s 74.0 Weakly correlated
356 MER67C 1 n.s 99.0 Highly correlated
357 MER70A 1 n.s 87.0 Weakly correlated
358 MER76 1 n.s 99.0 Highly correlated
359 MER77 1 n.s 99.0 Highly correlated
360 MER83B-int 1 n.s 99.0 Highly correlated
361 MLT1E1A 1 n.s 99.0 Highly correlated
362 MLT1H1 1 n.s 99.0 Highly correlated
363 MLT1J1 1 n.s 99.0 Highly correlated
364 MLT1J2-int 1 n.s 99.0 Highly correlated
365 MLT1M 1 n.s 99.0 Highly correlated
366 MLT1O 1 n.s 99.0 Highly correlated
367 MLT2A2 1 n.s 74.0 Weakly correlated
368 MLT2E 1 n.s 99.0 Highly correlated
369 MLT2F 1 n.s 99.0 Highly correlated
370 MSTA-int 1 n.s 43.0 Weakly correlated
371 MSTA1 1 n.s 74.0 Weakly correlated
372 MamGypLTR2b 1 n.s 99.0 Highly correlated
373 MamGypsy2-I 1 n.s 99.0 Highly correlated
374 MamGypsy2-LTR 1 n.s 99.0 Highly correlated
375 MamSINE1 1 n.s 99.0 Highly correlated
376 PABL_A-int 1 n.s 74.0 Weakly correlated
377 SVA_E 1 n.s 0.0 Weakly correlated
378 SVA_F 1 n.s 0.0 Weakly correlated
379 THE1B-int 1 n.s 43.0 Weakly correlated
380 THE1C-int 1 n.s 43.0 Weakly correlated
381 THE1D-int 1 n.s 28.9 Weakly correlated
382 X6B_LINE 1 n.s 99.0 Highly correlated
383 X7A_LINE 1 n.s 319.0 Weakly correlated
384 X7B_LINE 1 n.s 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1MB7 449 **** 99.0 Highly correlated
2 L1ME1 375 **** 99.0 Highly correlated
3 L1MB8 247 **** 99.0 Highly correlated
4 L1MB5 190 **** 99.0 Highly correlated
5 L1PA16 123 **** 74.0 Weakly correlated
6 L1PA13 123 **** 74.0 Weakly correlated
7 L1MC1 120 **** 99.0 Highly correlated
8 L1MD2 113 **** 99.0 Highly correlated
9 L1MB3 112 **** 99.0 Highly correlated
10 L1PA15 99 **** 74.0 Weakly correlated
11 L1MA3 97 **** 74.0 Weakly correlated
12 L1PREC2 93 **** 43.0 Weakly correlated
13 L1PB1 82 n.s 74.0 Weakly correlated
14 L1PA10 79 **** 74.0 Weakly correlated
15 L1MA2 74 **** 74.0 Weakly correlated
16 L1MB4 69 **** 99.0 Highly correlated
17 L1MB2 62 **** 99.0 Highly correlated
18 L1MC2 60 **** 99.0 Highly correlated
19 L1MD1 60 **** 99.0 Highly correlated
20 L1PA14 59 **** 74.0 Weakly correlated
21 L1MA1 57 **** 74.0 Weakly correlated
22 L1ME2 53 *** 99.0 Highly correlated
23 L1PA11 51 **** 74.0 Weakly correlated
24 L1MA4 49 * 87.0 Weakly correlated
25 L1ME4b 47 ** 99.0 Highly correlated
26 L1MC3 40 n.s 99.0 Highly correlated
27 L1PA17 38 **** 74.0 Weakly correlated
28 L1PA7 37 n.s 74.0 Weakly correlated
29 L1PA8 32 n.s 74.0 Weakly correlated
30 L1PB4 29 n.s 99.0 Highly correlated
31 L1PA8A 27 * 74.0 Weakly correlated
32 L1PA12 26 **** 74.0 Weakly correlated
33 L1MA8 23 n.s 87.0 Weakly correlated
34 L1MA7 21 n.s 87.0 Weakly correlated
35 L1MA4A 21 n.s 87.0 Weakly correlated
36 L1MC4a 20 n.s 99.0 Highly correlated
37 L1ME3 20 n.s 99.0 Highly correlated
38 L1MA9 19 n.s 99.0 Highly correlated
39 L1ME4a 17 n.s 99.0 Highly correlated
40 L1PB3 17 n.s 74.0 Weakly correlated
41 L1ME3A 15 n.s 99.0 Highly correlated
42 L1ME3G 14 n.s 99.0 Highly correlated
43 L1MB1 13 n.s 99.0 Highly correlated
44 L1ME2z 13 n.s 99.0 Highly correlated
45 L1PA6 13 n.s 28.9 Weakly correlated
46 L1MA5 12 n.s 87.0 Weakly correlated
47 L1MA5A 11 n.s 87.0 Weakly correlated
48 L1MC5a 11 n.s 99.0 Highly correlated
49 L1MA6 11 n.s 87.0 Weakly correlated
50 L1PB2 11 n.s 74.0 Weakly correlated
51 L1M5 11 n.s 99.0 Highly correlated
52 L1MD3 10 n.s 99.0 Highly correlated
53 AluSx 10 n.s 74.0 Weakly correlated
54 L1MC4 9 n.s 99.0 Highly correlated
55 L1PA5 6 n.s 19.6 Weakly correlated
56 L1M3 6 n.s 99.0 Highly correlated
57 L1ME3F 6 n.s 99.0 Highly correlated
58 L1ME3E 5 n.s 99.0 Highly correlated
59 AluSz 5 n.s 74.0 Weakly correlated
60 L2a 5 n.s 99.0 Highly correlated
61 AluSx1 5 n.s 74.0 Weakly correlated
62 AluSp 4 n.s 74.0 Weakly correlated
63 L1ME3B 4 n.s 99.0 Highly correlated
64 L1ME3C 4 n.s 99.0 Highly correlated
65 AluJb 4 n.s 74.0 Weakly correlated
66 MIRb 4 n.s 99.0 Highly correlated
67 L2b 4 n.s 99.0 Highly correlated
68 L1MA10 4 n.s 99.0 Highly correlated
69 L1MC5 4 n.s 99.0 Highly correlated
70 L1ME4c 4 n.s 99.0 Highly correlated
71 AluY 3 n.s 74.0 Weakly correlated
72 AluSc 3 n.s 74.0 Weakly correlated
73 L2c 3 n.s 99.0 Highly correlated
74 L1M4 3 n.s 99.0 Highly correlated
75 L1MD 3 n.s 99.0 Highly correlated
76 L1MEc 3 n.s 99.0 Highly correlated
77 L1PA4 3 n.s 19.6 Weakly correlated
78 L1ME3Cz 2 n.s 99.0 Highly correlated
79 AluJr 2 n.s 74.0 Weakly correlated
80 L1HS 2 n.s 8.6 Weakly correlated
81 L1MC 2 n.s 99.0 Highly correlated
82 AluJo 2 n.s 74.0 Weakly correlated
83 AluSq2 2 n.s 74.0 Weakly correlated
84 MIR 2 n.s 99.0 Highly correlated
85 MIR3 2 n.s 99.0 Highly correlated
86 AluSz6 2 n.s 74.0 Weakly correlated
87 L1M4a1 2 n.s 99.0 Highly correlated
88 AluSq 2 n.s 74.0 Weakly correlated
89 MLT1I 2 n.s 99.0 Highly correlated
90 MLT1J2 2 n.s 99.0 Highly correlated
91 L1MCc 1 n.s 99.0 Highly correlated
92 L1ME3D 1 n.s 99.0 Highly correlated
93 MLT2C1 1 n.s 99.0 Highly correlated
94 L1MCb 1 n.s 99.0 Highly correlated
95 AluJr4 1 n.s 74.0 Weakly correlated
96 L1M2 1 n.s 99.0 Highly correlated
97 L1MEg 1 n.s 99.0 Highly correlated
98 LTR2752 1 n.s 43.0 Weakly correlated
99 MER77B 1 n.s 99.0 Highly correlated
100 AluSc5 1 n.s 74.0 Weakly correlated
101 L1MEd 1 n.s 99.0 Highly correlated
102 L1PB 1 n.s 74.0 Weakly correlated
103 MLT1D 1 n.s 99.0 Highly correlated
104 MLT1N2 1 n.s 99.0 Highly correlated
105 AluSg 1 n.s 74.0 Weakly correlated
106 L1M4b 1 n.s 99.0 Highly correlated
107 L1MEf 1 n.s 99.0 Highly correlated
108 L1P3 1 n.s 74.0 Weakly correlated
109 L1PA2 1 n.s 15.2 Weakly correlated
110 LTR88b 1 n.s 99.0 Highly correlated
111 MER4-int 1 n.s 74.0 Weakly correlated
112 MER83B-int 1 n.s 99.0 Highly correlated
113 L2 1 n.s 99.0 Highly correlated
114 LOR1-int 1 n.s 74.0 Weakly correlated
115 LTR27E 1 n.s 43.0 Weakly correlated
116 MLT1J2-int 1 n.s 99.0 Highly correlated
117 MLT2B4 1 n.s 99.0 Highly correlated
118 L1M7 1 n.s 99.0 Highly correlated
119 ERVL-B4-int 1 n.s 99.0 Highly correlated
120 HUERS-P3-int 1 n.s 43.0 Weakly correlated
121 MSTB1 1 n.s 74.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 L1M3 99.0 Highly correlated
2 L1MA4 87.0 Weakly correlated
3 L1MA4A 87.0 Weakly correlated
4 L1MA5 87.0 Weakly correlated
5 L1MA5A 87.0 Weakly correlated
6 L1MA6 87.0 Weakly correlated
7 L1MA7 87.0 Weakly correlated
8 L1MA8 87.0 Weakly correlated
9 L1ME3G 99.0 Highly correlated
10 L1PA17 74.0 Weakly correlated
11 L1PB4 99.0 Highly correlated