ZRdb KZFP & Repeats
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Human_ZNF679

  • Protein
    Zinc finger protein 679
  • Length
    411
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    28.9 Mya
  • Time of Changing in binding specificity
    28.9 Mya
  • Uniprot_ID
    Q8IYX0
  • NCBI_ID
    168417
Sequence:
MAKRPGSPGSREMGLLTFRDVVIEFSLEEWQCLDHAQQNLYRDVMLENYRNLVSLGIAVSKPDLITCLEQNKEPWNIKRNEMVTKHPVMCSHFTQDLPPELGIKDSLQKVIPRRYGKSGHDNLQVKTCKSMGECEVQKGGCNEVNQCLSTTQNKIFQTHKCVKVFGKFSNSNRHKTRHTGKKHFKCKKYGKSFCMVSQLHQHQIIHTRENSYQCEECGKPFNCSSTLSKHKRIHTGEKPYRCEECGKAFTWSSTLTKHRRIHTGEKPYTCEECGQAFSRSSTLANHKRIHTGEKPYTCEECGKAFSLSSSLTYHKRIHTGEKPYTCEECGKAFNCSSTLKKHKIIHTGEKPYKCKECGKAFAFSSTLNTHKRIHTGEEPYKCEECDKAFKWSSSLANHKSMHTGEKPYKCE
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 16..87
2 dec2h2 156..178
3 dec2h2 184..206
4 C2h2 212..234
5 C2h2 240..262
6 C2h2 268..290
7 C2h2 296..318
8 C2h2 324..346
9 C2h2 352..374
10 C2h2 380..402
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of DNA-templated transcription
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 THE1D 5476 **** 43.0 Moderately correlated
2 MSTA 5213 **** 43.0 Moderately correlated
3 THE1C 4424 **** 43.0 Moderately correlated
4 L2a 980 **** 99.0 Weakly correlated
5 MSTB 959 **** 43.0 Moderately correlated
6 L2c 640 **** 99.0 Weakly correlated
7 MIRb 580 **** 99.0 Weakly correlated
8 THE1D-int 539 **** 28.9 Highly correlated
9 THE1C-int 529 **** 43.0 Moderately correlated
10 MIR 505 **** 99.0 Weakly correlated
11 L2b 422 **** 99.0 Weakly correlated
12 MSTA-int 398 **** 43.0 Moderately correlated
13 MLT1A0 317 **** 99.0 Weakly correlated
14 L1PA7 304 **** 74.0 Weakly correlated
15 THE1B 297 **** 43.0 Moderately correlated
16 MIRc 290 **** 99.0 Weakly correlated
17 AluY 259 n.s 74.0 Weakly correlated
18 AluJb 249 n.s 74.0 Weakly correlated
19 L2 247 **** 99.0 Weakly correlated
20 AluSx1 230 n.s 74.0 Weakly correlated
21 AluSx 224 n.s 74.0 Weakly correlated
22 L1PA5 221 * 19.6 Weakly correlated
23 MIR3 215 **** 99.0 Weakly correlated
24 AluSz 204 n.s 74.0 Weakly correlated
25 LTR12C 181 **** 19.6 Weakly correlated
26 L1PA4 169 n.s 19.6 Weakly correlated
27 L1ME1 167 n.s 99.0 Weakly correlated
28 L1PA6 162 ** 28.9 Highly correlated
29 L1PA3 152 n.s 19.6 Weakly correlated
30 MLT1C 151 **** 94.0 Weakly correlated
31 AluJr 150 n.s 74.0 Weakly correlated
32 L3 143 *** 99.0 Weakly correlated
33 MLT1B 134 **** 99.0 Weakly correlated
34 AluSq2 129 n.s 74.0 Weakly correlated
35 L1PA16 127 n.s 74.0 Weakly correlated
36 L1PREC2 127 **** 43.0 Moderately correlated
37 L1PA2 125 n.s 15.2 Weakly correlated
38 MLT1D 122 **** 99.0 Weakly correlated
39 L1PA10 119 **** 74.0 Weakly correlated
40 AluJo 117 n.s 74.0 Weakly correlated
41 L1MEc 116 n.s 99.0 Weakly correlated
42 L1PA15 115 * 74.0 Weakly correlated
43 HAL1 114 * 99.0 Weakly correlated
44 AluSp 113 n.s 74.0 Weakly correlated
45 AluSz6 112 n.s 74.0 Weakly correlated
46 L1PB1 111 n.s 74.0 Weakly correlated
47 L1M5 106 n.s 99.0 Weakly correlated
48 L1PA13 105 n.s 74.0 Weakly correlated
49 L1MB7 103 n.s 99.0 Weakly correlated
50 L1M1 102 n.s 74.0 Weakly correlated
51 L1MC3 101 * 99.0 Weakly correlated
52 AluSx3 98 n.s 74.0 Weakly correlated
53 L1M4 98 n.s 99.0 Weakly correlated
54 L1PA14 97 **** 74.0 Weakly correlated
55 L1MEg 96 ** 99.0 Weakly correlated
56 L1MA3 93 n.s 74.0 Weakly correlated
57 L1MA9 92 n.s 99.0 Weakly correlated
58 L1MB3 88 n.s 99.0 Weakly correlated
59 L1MC4 87 n.s 99.0 Weakly correlated
60 L1MEd 86 n.s 99.0 Weakly correlated
61 L1MB8 85 n.s 99.0 Weakly correlated
62 L1PA11 85 **** 74.0 Weakly correlated
63 L1MC1 84 n.s 99.0 Weakly correlated
64 AluSg 83 n.s 74.0 Weakly correlated
65 HERVH-int 83 * 28.9 Highly correlated
66 LTR33 82 **** 99.0 Weakly correlated
67 MLT1J 82 **** 99.0 Weakly correlated
68 AluSc 80 n.s 74.0 Weakly correlated
69 L1PA8 73 n.s 74.0 Weakly correlated
70 MSTB1 72 **** 74.0 Weakly correlated
71 MLT1A 71 **** 99.0 Weakly correlated
72 ERVL-E-int 70 *** 99.0 Weakly correlated
73 L1M2 70 n.s 99.0 Weakly correlated
74 LTR16C 69 **** 99.0 Weakly correlated
75 L1MA4 68 n.s 87.0 Weakly correlated
76 L1MEf 68 n.s 99.0 Weakly correlated
77 L1MCa 67 ** 99.0 Weakly correlated
78 THE1B-int 66 n.s 43.0 Moderately correlated
79 L1PA8A 65 **** 74.0 Weakly correlated
80 ERV3-16A3_I-int 64 ** 99.0 Weakly correlated
81 L1ME3A 64 n.s 99.0 Weakly correlated
82 L1MA2 63 n.s 74.0 Weakly correlated
83 L1MA8 63 n.s 87.0 Weakly correlated
84 L1MB5 63 * 99.0 Weakly correlated
85 L1MD2 63 n.s 99.0 Weakly correlated
86 L1PBa 62 **** 74.0 Weakly correlated
87 MLT1K 62 * 99.0 Weakly correlated
88 L1ME2 61 n.s 99.0 Weakly correlated
89 L1ME4a 61 n.s 99.0 Weakly correlated
90 L1ME4b 61 n.s 99.0 Weakly correlated
91 MER4E1 60 **** 74.0 Weakly correlated
92 L1MD1 59 * 99.0 Weakly correlated
93 MSTB-int 57 **** 43.0 Moderately correlated
94 MLT1F2 56 **** 99.0 Weakly correlated
95 THE1A 56 **** 43.0 Moderately correlated
96 L1MA4A 55 n.s 87.0 Weakly correlated
97 L1P3 54 *** 74.0 Weakly correlated
98 L1P2 52 **** 28.9 Highly correlated
99 MLT1I 52 **** 99.0 Weakly correlated
100 L1ME3 50 n.s 99.0 Weakly correlated
101 MLT1L 50 *** 99.0 Weakly correlated
102 AluSc8 49 n.s 74.0 Weakly correlated
103 L1PB4 49 n.s 99.0 Weakly correlated
104 AluSq 48 n.s 74.0 Weakly correlated
105 L1MA7 48 n.s 87.0 Weakly correlated
106 L1MC4a 48 n.s 99.0 Weakly correlated
107 L1MC5 48 n.s 99.0 Weakly correlated
108 L1MB1 47 n.s 99.0 Weakly correlated
109 L1HS 46 n.s 8.6 Weakly correlated
110 L1MB2 46 n.s 99.0 Weakly correlated
111 L1ME3G 46 n.s 99.0 Weakly correlated
112 L1ME3Cz 44 n.s 99.0 Weakly correlated
113 L1MA1 43 n.s 74.0 Weakly correlated
114 L1MA5 43 * 87.0 Weakly correlated
115 L1MC5a 43 n.s 99.0 Weakly correlated
116 L1P1 43 n.s 19.6 Weakly correlated
117 L1MDa 41 n.s 99.0 Weakly correlated
118 MLT1E1A 41 **** 99.0 Weakly correlated
119 L1PA17 40 n.s 74.0 Weakly correlated
120 FLAM_C 39 n.s 74.0 Weakly correlated
121 L1MB4 39 n.s 99.0 Weakly correlated
122 MLT1A1 39 ** 87.0 Weakly correlated
123 MSTD 39 ** 74.0 Weakly correlated
124 L1MC 38 * 99.0 Weakly correlated
125 MLT1F 38 **** 99.0 Weakly correlated
126 ERVL-B4-int 36 n.s 99.0 Weakly correlated
127 L1PB2 36 * 74.0 Weakly correlated
128 MER39 36 **** 74.0 Weakly correlated
129 MLT1H 36 n.s 99.0 Weakly correlated
130 L1MC2 35 n.s 99.0 Weakly correlated
131 LTR14B 35 **** 28.9 Highly correlated
132 MLT1G1 34 **** 99.0 Weakly correlated
133 MLT1J2 34 *** 99.0 Weakly correlated
134 AluJr4 33 n.s 74.0 Weakly correlated
135 L4_A_Mam 33 ** 99.0 Weakly correlated
136 MLT1E2 33 *** 99.0 Weakly correlated
137 MLT1F1 33 **** 99.0 Weakly correlated
138 L1M4b 32 n.s 99.0 Weakly correlated
139 L1MA6 32 n.s 87.0 Weakly correlated
140 L1PB3 32 n.s 74.0 Weakly correlated
141 MER11A 32 **** 28.9 Highly correlated
142 HAL1ME 31 n.s 99.0 Weakly correlated
143 L1MA5A 31 * 87.0 Weakly correlated
144 LTR50 31 **** 99.0 Weakly correlated
145 MLT1O 31 **** 99.0 Weakly correlated
146 L3b 30 ** 99.0 Weakly correlated
147 MER21C 30 n.s 99.0 Weakly correlated
148 MamRTE1 30 *** 99.0 Weakly correlated
149 LTR16A 29 *** 99.0 Weakly correlated
150 L1M3 28 n.s 99.0 Weakly correlated
151 MER52A 28 * 74.0 Weakly correlated
152 MER65A 28 **** 74.0 Weakly correlated
153 AluSx4 27 n.s 74.0 Weakly correlated
154 HERVL18-int 27 **** 43.0 Moderately correlated
155 L1M4c 27 n.s 99.0 Weakly correlated
156 L1MD 27 n.s 99.0 Weakly correlated
157 LTR16E1 27 **** 99.0 Weakly correlated
158 FLAM_A 26 n.s 74.0 Weakly correlated
159 L1ME3B 26 n.s 99.0 Weakly correlated
160 MLT1H2 26 *** 99.0 Weakly correlated
161 LTR78 25 ** 99.0 Weakly correlated
162 LTR8 25 n.s 43.0 Moderately correlated
163 MLT2B1 25 * 99.0 Weakly correlated
164 L1MD3 24 n.s 99.0 Weakly correlated
165 L1PA12 24 n.s 74.0 Weakly correlated
166 LTR40a 24 **** 99.0 Weakly correlated
167 AluSg7 23 n.s 74.0 Weakly correlated
168 LTR9D 23 **** 43.0 Moderately correlated
169 L1M6 22 n.s 99.0 Weakly correlated
170 L1MCb 22 * 99.0 Weakly correlated
171 L1P4 22 n.s 74.0 Weakly correlated
172 LTR16 22 *** 99.0 Weakly correlated
173 MLT2D 22 ** 99.0 Weakly correlated
174 MER21B 21 * 99.0 Weakly correlated
175 MER41A 21 ** 74.0 Weakly correlated
176 MLT1J1 21 ** 99.0 Weakly correlated
177 MamRep605 21 *** 99.0 Weakly correlated
178 HERVL-int 20 n.s 74.0 Weakly correlated
179 L1ME3D 20 n.s 99.0 Weakly correlated
180 LTR12E 20 **** 19.6 Weakly correlated
181 LTR49 20 **** 74.0 Weakly correlated
182 LTR78B 20 **** 99.0 Weakly correlated
183 MER4-int 20 n.s 74.0 Weakly correlated
184 MER50 20 * 43.0 Moderately correlated
185 L1ME3E 19 n.s 99.0 Weakly correlated
186 MER4B-int 19 ** 99.0 Weakly correlated
187 MIR1_Amn 19 n.s 319.0 Weakly correlated
188 MLT1E3 19 *** 99.0 Weakly correlated
189 MLT2A2 19 n.s 74.0 Weakly correlated
190 L1MCc 18 n.s 99.0 Weakly correlated
191 MER41-int 18 n.s 74.0 Weakly correlated
192 MER41B 18 n.s 74.0 Weakly correlated
193 MER57A-int 18 * 43.0 Moderately correlated
194 MLT1H1 18 n.s 99.0 Weakly correlated
195 MLT2B3 18 n.s 99.0 Weakly correlated
196 L1ME2z 17 n.s 99.0 Weakly correlated
197 L1ME3F 17 n.s 99.0 Weakly correlated
198 L1ME4c 17 n.s 99.0 Weakly correlated
199 L1MEi 17 n.s 99.0 Weakly correlated
200 HERV16-int 16 * 99.0 Weakly correlated
201 L1PA15-16 16 n.s 74.0 Weakly correlated
202 LTR67B 16 ** 99.0 Weakly correlated
203 LTR8B 16 * 43.0 Moderately correlated
204 MER66D 16 **** 43.0 Moderately correlated
205 MLT1G 16 * 99.0 Weakly correlated
206 MLT2B4 16 n.s 99.0 Weakly correlated
207 HERVK11-int 15 **** 28.9 Highly correlated
208 L1M4a1 15 n.s 99.0 Weakly correlated
209 L4_B_Mam 15 * 99.0 Weakly correlated
210 L4_C_Mam 15 n.s 99.0 Weakly correlated
211 LTR33A 15 *** 99.0 Weakly correlated
212 MER11B 15 *** 19.6 Weakly correlated
213 Alu 14 **** 74.0 Weakly correlated
214 ERV3-16A3_LTR 14 **** 99.0 Weakly correlated
215 HAL1b 14 n.s 99.0 Weakly correlated
216 L1MA10 14 n.s 99.0 Weakly correlated
217 L1PB 14 n.s 74.0 Weakly correlated
218 LTR16E2 14 ** 99.0 Weakly correlated
219 LTR79 14 * 99.0 Weakly correlated
220 LTR82B 14 **** 99.0 Weakly correlated
221 MER4B 14 * 74.0 Weakly correlated
222 MER57B2 14 **** 43.0 Moderately correlated
223 MER76 14 **** 99.0 Weakly correlated
224 MLT1G3 14 n.s 99.0 Weakly correlated
225 MLT1N2 14 n.s 99.0 Weakly correlated
226 MSTC 14 n.s 74.0 Weakly correlated
227 MSTD-int 14 ** 74.0 Weakly correlated
228 AluSc5 13 n.s 74.0 Weakly correlated
229 FRAM 13 n.s 74.0 Weakly correlated
230 L1M2a 13 ** 87.0 Weakly correlated
231 L1P4a 13 * 74.0 Weakly correlated
232 LTR33A_ 13 ** 99.0 Weakly correlated
233 LTR48 13 *** 74.0 Weakly correlated
234 MER31B 13 ** 99.0 Weakly correlated
235 MLT2F 13 * 99.0 Weakly correlated
236 HAL1M8 12 n.s 99.0 Weakly correlated
237 L1M2c 12 *** 87.0 Weakly correlated
238 L1ME5 12 n.s 99.0 Weakly correlated
239 L1PBb 12 *** 74.0 Weakly correlated
240 LTR16A1 12 n.s 99.0 Weakly correlated
241 LTR33B 12 *** 99.0 Weakly correlated
242 LTR37-int 12 ** 99.0 Weakly correlated
243 LTR49-int 12 n.s 74.0 Weakly correlated
244 LTR8A 12 n.s 43.0 Moderately correlated
245 MamSINE1 12 n.s 99.0 Weakly correlated
246 SVA_F 12 n.s 0.0 Weakly correlated
247 L1M3b 11 ** 99.0 Weakly correlated
248 L1M4a2 11 n.s 99.0 Weakly correlated
249 L1MEh 11 n.s 99.0 Weakly correlated
250 LTR16A2 11 * 99.0 Weakly correlated
251 MER4D 11 * 74.0 Weakly correlated
252 MSTB2 11 * 74.0 Weakly correlated
253 Plat_L3 11 * 99.0 Weakly correlated
254 THE1A-int 11 n.s 43.0 Moderately correlated
255 AluSg4 10 n.s 74.0 Weakly correlated
256 AluYm1 10 n.s 19.6 Weakly correlated
257 HERV35I-int 10 ** 43.0 Moderately correlated
258 HERVE_a-int 10 ** 28.9 Highly correlated
259 L1M8 10 n.s 99.0 Weakly correlated
260 L1MEb 10 n.s 99.0 Weakly correlated
261 LTR17 10 * 28.9 Highly correlated
262 LTR40b 10 ** 99.0 Weakly correlated
263 LTR40c 10 **** 99.0 Weakly correlated
264 LTR41 10 ** 99.0 Weakly correlated
265 LTR41B 10 *** 99.0 Weakly correlated
266 MER31A 10 * 87.0 Weakly correlated
267 MER34C2 10 **** 74.0 Weakly correlated
268 MER49 10 n.s 43.0 Moderately correlated
269 MER4A 10 ** 74.0 Weakly correlated
270 MER4D1 10 n.s 74.0 Weakly correlated
271 MER4E 10 ** 74.0 Weakly correlated
272 MER57A1 10 ** 43.0 Moderately correlated
273 MER57C2 10 **** 87.0 Weakly correlated
274 MER68 10 n.s 99.0 Weakly correlated
275 MER74A 10 n.s 99.0 Weakly correlated
276 MER77B 10 * 99.0 Weakly correlated
277 MLT1E1 10 ** 99.0 Weakly correlated
278 MLT1J-int 10 * 99.0 Weakly correlated
279 MLT1M 10 ** 99.0 Weakly correlated
280 MLT2A1 10 n.s 74.0 Weakly correlated
281 MLT2C1 10 n.s 99.0 Weakly correlated
282 AluYc 9 n.s 74.0 Weakly correlated
283 AluYj4 9 n.s 0.0 Weakly correlated
284 AluYk3 9 * 19.6 Weakly correlated
285 L1M3e 9 n.s 99.0 Weakly correlated
286 L1M3f 9 n.s 87.0 Weakly correlated
287 L1M7 9 n.s 99.0 Weakly correlated
288 LTR16B1 9 * 99.0 Weakly correlated
289 LTR16D 9 ** 99.0 Weakly correlated
290 LTR2 9 * 28.9 Highly correlated
291 LTR33C 9 *** 99.0 Weakly correlated
292 LTR39 9 n.s 43.0 Moderately correlated
293 LTR81B 9 ** 99.0 Weakly correlated
294 LTR9 9 * 43.0 Moderately correlated
295 MER11C 9 n.s 19.6 Weakly correlated
296 MER34 9 * 87.0 Weakly correlated
297 MER39B 9 * 74.0 Weakly correlated
298 MER65C 9 *** 74.0 Weakly correlated
299 MamGypLTR3 9 **** 99.0 Weakly correlated
300 AluYa5 8 n.s 15.2 Weakly correlated
301 ERV24_Prim-int 8 ** 74.0 Weakly correlated
302 L1M3de 8 * 99.0 Weakly correlated
303 L1PBa1 8 n.s 74.0 Weakly correlated
304 LTR16B2 8 n.s 99.0 Weakly correlated
305 LTR37A 8 n.s 99.0 Weakly correlated
306 LTR43 8 *** 74.0 Weakly correlated
307 LTR82A 8 * 99.0 Weakly correlated
308 MER21-int 8 n.s 99.0 Weakly correlated
309 MER54A 8 * 87.0 Weakly correlated
310 MER66-int 8 n.s 43.0 Moderately correlated
311 SVA_D 8 n.s 15.2 Weakly correlated
312 AmnSINE1 7 * 319.0 Weakly correlated
313 HERV17-int 7 n.s 28.9 Highly correlated
314 HERV9NC-int 7 n.s 19.6 Weakly correlated
315 HERVL40-int 7 n.s 99.0 Weakly correlated
316 HUERS-P3-int 7 n.s 43.0 Moderately correlated
317 L1M2b 7 *** 87.0 Weakly correlated
318 L1MDb 7 n.s 99.0 Weakly correlated
319 L1ME3C 7 n.s 99.0 Weakly correlated
320 LTR12D 7 n.s 19.6 Weakly correlated
321 LTR18B 7 *** 43.0 Moderately correlated
322 LTR23 7 ** 74.0 Weakly correlated
323 LTR29 7 ** 43.0 Moderately correlated
324 LTR48B 7 n.s 74.0 Weakly correlated
325 LTR55 7 *** 99.0 Weakly correlated
326 LTR7 7 n.s 19.6 Weakly correlated
327 LTR80A 7 *** 99.0 Weakly correlated
328 LTR85a 7 n.s 99.0 Weakly correlated
329 LTR87 7 ** 99.0 Weakly correlated
330 MER101-int 7 n.s 74.0 Weakly correlated
331 MER52D 7 n.s 74.0 Weakly correlated
332 MER65-int 7 n.s 87.0 Weakly correlated
333 MER66C 7 *** 43.0 Moderately correlated
334 MER84-int 7 **** 74.0 Weakly correlated
335 MER90a 7 n.s 99.0 Weakly correlated
336 MLT1A0-int 7 n.s 99.0 Weakly correlated
337 MLT1F-int 7 ** 99.0 Weakly correlated
338 MamRep1527 7 * 99.0 Weakly correlated
339 THE1-int 7 **** 43.0 Moderately correlated
340 X7B_LINE 7 **** 319.0 Weakly correlated
341 ERV24B_Prim-int 6 * 74.0 Weakly correlated
342 FAM 6 n.s 87.0 Weakly correlated
343 HERVK14-int 6 n.s 28.9 Highly correlated
344 L1M3c 6 n.s 99.0 Weakly correlated
345 L1MEj 6 n.s 99.0 Weakly correlated
346 L2-3_Crp 6 n.s 431.0 Weakly correlated
347 LOR1a 6 n.s 74.0 Weakly correlated
348 LTR101_Mam 6 n.s 99.0 Weakly correlated
349 LTR105_Mam 6 ** 99.0 Weakly correlated
350 LTR14A 6 **** 28.9 Highly correlated
351 LTR18A 6 **** 43.0 Moderately correlated
352 LTR1A2 6 n.s 43.0 Moderately correlated
353 LTR27E 6 ** 43.0 Moderately correlated
354 LTR32 6 n.s 43.0 Moderately correlated
355 LTR43-int 6 *** 74.0 Weakly correlated
356 LTR54B 6 * 74.0 Weakly correlated
357 LTR5_Hs 6 n.s 0.0 Weakly correlated
358 LTR89 6 * 99.0 Weakly correlated
359 MER4CL34 6 n.s 43.0 Moderately correlated
360 MER57-int 6 n.s 87.0 Weakly correlated
361 MER77 6 n.s 99.0 Weakly correlated
362 MER89 6 n.s 99.0 Weakly correlated
363 MER92-int 6 n.s 99.0 Weakly correlated
364 MER92B 6 * 99.0 Weakly correlated
365 MamGypLTR2c 6 * 99.0 Weakly correlated
366 MamGypLTR3a 6 n.s 99.0 Weakly correlated
367 MamGypsy2-I 6 n.s 99.0 Weakly correlated
368 AluSq4 5 n.s 74.0 Weakly correlated
369 AluYb8 5 n.s 15.2 Weakly correlated
370 AluYf1 5 n.s 19.6 Weakly correlated
371 HERV9N-int 5 n.s 19.6 Weakly correlated
372 HERVE-int 5 n.s 19.6 Weakly correlated
373 HERVFH21-int 5 ** 28.9 Highly correlated
374 HERVH48-int 5 * 28.9 Highly correlated
375 HERVIP10FH-int 5 n.s 28.9 Highly correlated
376 HERVK22-int 5 n.s 43.0 Moderately correlated
377 HERVP71A-int 5 n.s 43.0 Moderately correlated
378 Harlequin-int 5 n.s 74.0 Weakly correlated
379 L1M3a 5 n.s 99.0 Weakly correlated
380 L1MEg1 5 n.s 99.0 Weakly correlated
381 LOR1-int 5 n.s 74.0 Weakly correlated
382 LOR1b 5 n.s 74.0 Weakly correlated
383 LTR12_ 5 n.s 28.9 Highly correlated
384 LTR1B 5 * 43.0 Moderately correlated
385 LTR3 5 **** 28.9 Highly correlated
386 LTR30 5 *** 28.9 Highly correlated
387 LTR4 5 **** 28.9 Highly correlated
388 LTR52 5 n.s 99.0 Weakly correlated
389 LTR56 5 n.s 74.0 Weakly correlated
390 LTR57-int 5 * 74.0 Weakly correlated
391 LTR85c 5 * 99.0 Weakly correlated
392 LTR88b 5 n.s 99.0 Weakly correlated
393 MER31-int 5 n.s 99.0 Weakly correlated
394 MER4A1 5 n.s 74.0 Weakly correlated
395 MER50-int 5 n.s 43.0 Moderately correlated
396 MER54B 5 * 87.0 Weakly correlated
397 MER57B1 5 n.s 43.0 Moderately correlated
398 MER61-int 5 n.s 43.0 Moderately correlated
399 MER61C 5 ** 43.0 Moderately correlated
400 MER66B 5 n.s 43.0 Moderately correlated
401 MER67C 5 n.s 99.0 Weakly correlated
402 MER68B 5 ** 99.0 Weakly correlated
403 MER70B 5 n.s 87.0 Weakly correlated
404 MER72 5 n.s 43.0 Moderately correlated
405 MER74B 5 n.s 99.0 Weakly correlated
406 MER9a3 5 n.s 28.9 Highly correlated
407 MLT1I-int 5 n.s 99.0 Weakly correlated
408 MSTA1 5 * 74.0 Weakly correlated
409 MamGypLTR1c 5 n.s 99.0 Weakly correlated
410 MamRep1151 5 n.s 99.0 Weakly correlated
411 PABL_B 5 ** 43.0 Moderately correlated
412 SVA_A 5 n.s 19.6 Weakly correlated
413 AluSq10 4 n.s 74.0 Weakly correlated
414 AluYh3 4 n.s 15.2 Weakly correlated
415 ERVL-int 4 n.s 99.0 Weakly correlated
416 HERV9-int 4 n.s 28.9 Highly correlated
417 HERVI-int 4 n.s 28.9 Highly correlated
418 HERVIP10F-int 4 n.s 28.9 Highly correlated
419 HUERS-P1-int 4 n.s 43.0 Moderately correlated
420 HUERS-P2-int 4 n.s 43.0 Moderately correlated
421 L1M3d 4 n.s 99.0 Weakly correlated
422 L1MEg2 4 n.s 99.0 Weakly correlated
423 LTR10A 4 * 28.9 Highly correlated
424 LTR1D 4 n.s 43.0 Moderately correlated
425 LTR1E 4 n.s 43.0 Moderately correlated
426 LTR22B2 4 **** 28.9 Highly correlated
427 LTR26 4 n.s 74.0 Weakly correlated
428 LTR28C 4 n.s 43.0 Moderately correlated
429 LTR64 4 * 74.0 Weakly correlated
430 LTR81A 4 n.s 99.0 Weakly correlated
431 LTR81C 4 * 99.0 Weakly correlated
432 LTR84b 4 n.s 99.0 Weakly correlated
433 LTR85b 4 n.s 99.0 Weakly correlated
434 LTR86A2 4 ** 99.0 Weakly correlated
435 LTR88c 4 * 99.0 Weakly correlated
436 MER110-int 4 n.s 99.0 Weakly correlated
437 MER21A 4 n.s 74.0 Weakly correlated
438 MER34A 4 n.s 99.0 Weakly correlated
439 MER34A1 4 n.s 99.0 Weakly correlated
440 MER34B-int 4 n.s 99.0 Weakly correlated
441 MER34C_ 4 n.s 87.0 Weakly correlated
442 MER34D 4 ** 74.0 Weakly correlated
443 MER4C 4 n.s 74.0 Weakly correlated
444 MER4D0 4 n.s 74.0 Weakly correlated
445 MER50B 4 n.s 43.0 Moderately correlated
446 MER61A 4 n.s 43.0 Moderately correlated
447 MER70-int 4 n.s 99.0 Weakly correlated
448 MER73 4 * 87.0 Weakly correlated
449 MER89-int 4 n.s 99.0 Weakly correlated
450 MER9a1 4 n.s 19.6 Weakly correlated
451 MLT1B-int 4 n.s 99.0 Weakly correlated
452 MLT1G1-int 4 * 99.0 Weakly correlated
453 MLT1H-int 4 n.s 99.0 Weakly correlated
454 MLT1H1-int 4 n.s 99.0 Weakly correlated
455 MLT2B2 4 n.s 99.0 Weakly correlated
456 MamGypLTR1a 4 n.s 99.0 Weakly correlated
457 MamGypsy2-LTR 4 ** 99.0 Weakly correlated
458 PRIMA4-int 4 n.s 74.0 Weakly correlated
459 CR1_Mam 3 n.s 99.0 Weakly correlated
460 HERVIP10B3-int 3 n.s 28.9 Highly correlated
461 HERVK-int 3 n.s 28.9 Highly correlated
462 HERVK3-int 3 n.s 28.9 Highly correlated
463 HERVS71-int 3 n.s 28.9 Highly correlated
464 L1M 3 * 74.0 Weakly correlated
465 L1M6B 3 n.s 99.0 Weakly correlated
466 L1P4e 3 n.s 74.0 Weakly correlated
467 LFSINE_Vert 3 n.s 319.0 Weakly correlated
468 LTR104_Mam 3 n.s 99.0 Weakly correlated
469 LTR16D2 3 * 99.0 Weakly correlated
470 LTR1D1 3 n.s 43.0 Moderately correlated
471 LTR22C2 3 ** 28.9 Highly correlated
472 LTR24C 3 n.s 74.0 Weakly correlated
473 LTR26C 3 * 0.0 Weakly correlated
474 LTR26D 3 * 0.0 Weakly correlated
475 LTR34 3 * 74.0 Weakly correlated
476 LTR36 3 n.s 74.0 Weakly correlated
477 LTR37B 3 n.s 99.0 Weakly correlated
478 LTR40A1 3 n.s 99.0 Weakly correlated
479 LTR41C 3 n.s 99.0 Weakly correlated
480 LTR45B 3 n.s 74.0 Weakly correlated
481 LTR53 3 n.s 99.0 Weakly correlated
482 LTR59 3 ** 43.0 Moderately correlated
483 LTR5A 3 n.s 19.6 Weakly correlated
484 LTR65 3 n.s 99.0 Weakly correlated
485 LTR68 3 * 99.0 Weakly correlated
486 LTR6A 3 n.s 28.9 Highly correlated
487 LTR73 3 * 99.0 Weakly correlated
488 LTR7C 3 n.s 28.9 Highly correlated
489 LTR80B 3 n.s 99.0 Weakly correlated
490 LTR84a 3 n.s 99.0 Weakly correlated
491 LTR9A1 3 n.s 43.0 Moderately correlated
492 MER110 3 n.s 99.0 Weakly correlated
493 MER41D 3 n.s 74.0 Weakly correlated
494 MER41E 3 n.s 74.0 Weakly correlated
495 MER4A1_ 3 n.s 74.0 Weakly correlated
496 MER51C 3 * 43.0 Moderately correlated
497 MER52-int 3 n.s 99.0 Weakly correlated
498 MER57D 3 n.s 87.0 Weakly correlated
499 MER61E 3 n.s 43.0 Moderately correlated
500 MER66A 3 n.s 43.0 Moderately correlated
501 MER67B 3 n.s 99.0 Weakly correlated
502 MER67D 3 n.s 99.0 Weakly correlated
503 MER70A 3 n.s 87.0 Weakly correlated
504 MER72B 3 * 43.0 Moderately correlated
505 MER83 3 n.s 43.0 Moderately correlated
506 MER9a2 3 n.s 19.6 Weakly correlated
507 MLT1A-int 3 n.s 99.0 Weakly correlated
508 MLT1G3-int 3 * 99.0 Weakly correlated
509 MLT1H2-int 3 n.s 99.0 Weakly correlated
510 MLT1J2-int 3 n.s 99.0 Weakly correlated
511 MLT2C2 3 n.s 99.0 Weakly correlated
512 MSTB1-int 3 n.s 74.0 Weakly correlated
513 MamGyp-int 3 n.s 99.0 Weakly correlated
514 MamGypLTR2b 3 n.s 99.0 Weakly correlated
515 PABL_B-int 3 n.s 74.0 Weakly correlated
516 PRIMA41-int 3 n.s 74.0 Weakly correlated
517 Penelope1_Vert 3 * 319.0 Weakly correlated
518 SVA_C 3 n.s 15.2 Weakly correlated
519 SVA_E 3 n.s 0.0 Weakly correlated
520 X6A_LINE 3 n.s 99.0 Weakly correlated
521 AluYb9 2 n.s 15.2 Weakly correlated
522 AluYk4 2 n.s 15.2 Weakly correlated
523 CR1-3_Croc 2 n.s 319.0 Weakly correlated
524 HERV1_I-int 2 n.s 43.0 Moderately correlated
525 HERV30-int 2 n.s 28.9 Highly correlated
526 HERV4_I-int 2 n.s 43.0 Moderately correlated
527 L1P4d 2 n.s 74.0 Weakly correlated
528 L1P5 2 n.s 74.0 Weakly correlated
529 LTR102_Mam 2 n.s 99.0 Weakly correlated
530 LTR108e_Mam 2 * 99.0 Weakly correlated
531 LTR10G 2 * 28.9 Highly correlated
532 LTR12 2 n.s 28.9 Highly correlated
533 LTR18C 2 ** 43.0 Moderately correlated
534 LTR19A 2 n.s 43.0 Moderately correlated
535 LTR1A1 2 n.s 43.0 Moderately correlated
536 LTR21C 2 *** 28.9 Highly correlated
537 LTR22A 2 * 43.0 Moderately correlated
538 LTR23-int 2 * 74.0 Weakly correlated
539 LTR24B 2 n.s 74.0 Weakly correlated
540 LTR25 2 n.s 43.0 Moderately correlated
541 LTR2752 2 n.s 43.0 Moderately correlated
542 LTR27D 2 n.s 43.0 Moderately correlated
543 LTR28 2 n.s 43.0 Moderately correlated
544 LTR35 2 ** 43.0 Moderately correlated
545 LTR38 2 n.s 74.0 Weakly correlated
546 LTR3B 2 ** 28.9 Highly correlated
547 LTR43B 2 n.s 74.0 Weakly correlated
548 LTR45 2 * 99.0 Weakly correlated
549 LTR45C 2 n.s 99.0 Weakly correlated
550 LTR47A 2 n.s 74.0 Weakly correlated
551 LTR47B3 2 ** 74.0 Weakly correlated
552 LTR53-int 2 n.s 99.0 Weakly correlated
553 LTR54 2 n.s 74.0 Weakly correlated
554 LTR57 2 n.s 74.0 Weakly correlated
555 LTR61 2 n.s 43.0 Moderately correlated
556 LTR66 2 n.s 43.0 Moderately correlated
557 LTR6B 2 n.s 19.6 Weakly correlated
558 LTR71B 2 n.s 43.0 Moderately correlated
559 LTR75B 2 * 99.0 Weakly correlated
560 LTR76 2 n.s 74.0 Weakly correlated
561 LTR77 2 * 94.0 Weakly correlated
562 LTR86A1 2 n.s 99.0 Weakly correlated
563 LTR90A 2 * 99.0 Weakly correlated
564 MER101B 2 n.s 87.0 Weakly correlated
565 MER110A 2 n.s 99.0 Weakly correlated
566 MER41C 2 n.s 74.0 Weakly correlated
567 MER48 2 n.s 28.9 Highly correlated
568 MER51A 2 n.s 43.0 Moderately correlated
569 MER51B 2 n.s 43.0 Moderately correlated
570 MER51E 2 n.s 43.0 Moderately correlated
571 MER57E3 2 * 74.0 Weakly correlated
572 MER61D 2 n.s 43.0 Moderately correlated
573 MER68-int 2 n.s 99.0 Weakly correlated
574 MER83B-int 2 n.s 99.0 Weakly correlated
575 MER84 2 n.s 43.0 Moderately correlated
576 MER87B 2 n.s 74.0 Weakly correlated
577 MER92D 2 * 99.0 Weakly correlated
578 MLT-int 2 n.s 99.0 Weakly correlated
579 MLT1-int 2 n.s 99.0 Weakly correlated
580 MLT1C-int 2 n.s 94.0 Weakly correlated
581 MLT1E 2 n.s 99.0 Weakly correlated
582 MLT1E2-int 2 * 99.0 Weakly correlated
583 MLT1E3-int 2 ** 99.0 Weakly correlated
584 MLT1G-int 2 n.s 99.0 Weakly correlated
585 MLT2B5 2 n.s 87.0 Weakly correlated
586 MST-int 2 n.s 74.0 Weakly correlated
587 MSTB2-int 2 n.s 74.0 Weakly correlated
588 MamGypLTR1b 2 n.s 99.0 Weakly correlated
589 MamGypLTR1d 2 n.s 99.0 Weakly correlated
590 Mam_R4 2 n.s 99.0 Weakly correlated
591 PABL_A 2 n.s 43.0 Moderately correlated
592 PABL_A-int 2 n.s 74.0 Weakly correlated
593 PRIMA4_LTR 2 n.s 74.0 Weakly correlated
594 X6B_LINE 2 n.s 99.0 Weakly correlated
595 X7A_LINE 2 n.s 319.0 Weakly correlated
596 AluYa8 1 n.s 15.2 Weakly correlated
597 AluYc3 1 n.s 74.0 Weakly correlated
598 AluYd8 1 n.s 15.2 Weakly correlated
599 AluYe5 1 n.s 74.0 Weakly correlated
600 AluYg6 1 n.s 15.2 Weakly correlated
601 AluYi6_4d 1 n.s 0.0 Weakly correlated
602 AluYk12 1 n.s 15.2 Weakly correlated
603 AluYk2 1 n.s 19.6 Weakly correlated
604 AmnSINE2 1 n.s 319.0 Weakly correlated
605 CR1-L3A_Croc 1 n.s 319.0 Weakly correlated
606 ERVL47-int 1 n.s 74.0 Weakly correlated
607 HERVK13-int 1 n.s 19.6 Weakly correlated
608 HERVK14C-int 1 n.s 28.9 Highly correlated
609 HERVK9-int 1 n.s 28.9 Highly correlated
610 HERVL32-int 1 n.s 43.0 Moderately correlated
611 HERVL66-int 1 n.s 43.0 Moderately correlated
612 HERVL74-int 1 n.s 99.0 Weakly correlated
613 HUERS-P3b-int 1 n.s 43.0 Moderately correlated
614 L1M2a1 1 n.s 79.0 Weakly correlated
615 L1P3b 1 n.s 43.0 Moderately correlated
616 L2-1_AMi 1 n.s 319.0 Weakly correlated
617 L5 1 n.s 99.0 Weakly correlated
618 LTR06 1 * 74.0 Weakly correlated
619 LTR103_Mam 1 n.s 99.0 Weakly correlated
620 LTR103b_Mam 1 n.s 99.0 Weakly correlated
621 LTR10B1 1 n.s 28.9 Highly correlated
622 LTR10F 1 n.s 28.9 Highly correlated
623 LTR12F 1 n.s 28.9 Highly correlated
624 LTR13 1 n.s 19.6 Weakly correlated
625 LTR13A 1 n.s 28.9 Highly correlated
626 LTR14 1 n.s 28.9 Highly correlated
627 LTR15 1 n.s 28.9 Highly correlated
628 LTR16B 1 n.s 99.0 Weakly correlated
629 LTR16D1 1 n.s 99.0 Weakly correlated
630 LTR19B 1 n.s 43.0 Moderately correlated
631 LTR1B1 1 n.s 43.0 Moderately correlated
632 LTR1F 1 n.s 43.0 Moderately correlated
633 LTR21B 1 * 28.9 Highly correlated
634 LTR22 1 n.s 28.9 Highly correlated
635 LTR22B 1 n.s 28.9 Highly correlated
636 LTR24 1 n.s 74.0 Weakly correlated
637 LTR25-int 1 n.s 43.0 Moderately correlated
638 LTR26E 1 n.s 74.0 Weakly correlated
639 LTR27B 1 n.s 43.0 Moderately correlated
640 LTR28B 1 n.s 43.0 Moderately correlated
641 LTR2B 1 n.s 19.6 Weakly correlated
642 LTR31 1 n.s 74.0 Weakly correlated
643 LTR35B 1 n.s 43.0 Moderately correlated
644 LTR38B 1 n.s 74.0 Weakly correlated
645 LTR38C 1 n.s 74.0 Weakly correlated
646 LTR39-int 1 n.s 43.0 Moderately correlated
647 LTR3A 1 n.s 28.9 Highly correlated
648 LTR3B_ 1 n.s 28.9 Highly correlated
649 LTR42 1 n.s 74.0 Weakly correlated
650 LTR44 1 n.s 74.0 Weakly correlated
651 LTR46 1 n.s 43.0 Moderately correlated
652 LTR47A2 1 n.s 74.0 Weakly correlated
653 LTR47B2 1 n.s 74.0 Weakly correlated
654 LTR51 1 n.s 74.0 Weakly correlated
655 LTR52-int 1 n.s 99.0 Weakly correlated
656 LTR53B 1 n.s 99.0 Weakly correlated
657 LTR60 1 ** 43.0 Moderately correlated
658 LTR60B 1 n.s 74.0 Weakly correlated
659 LTR69 1 n.s 99.0 Weakly correlated
660 LTR71A 1 n.s 43.0 Moderately correlated
661 LTR72B 1 n.s 74.0 Weakly correlated
662 LTR7B 1 n.s 28.9 Highly correlated
663 LTR81 1 n.s 99.0 Weakly correlated
664 LTR83 1 n.s 99.0 Weakly correlated
665 LTR86B1 1 n.s 99.0 Weakly correlated
666 LTR86B2 1 n.s 99.0 Weakly correlated
667 LTR86C 1 n.s 99.0 Weakly correlated
668 LTR90B 1 n.s 99.0 Weakly correlated
669 LTR9C 1 n.s 43.0 Moderately correlated
670 MER101 1 n.s 74.0 Weakly correlated
671 MER11D 1 n.s 19.6 Weakly correlated
672 MER129 1 * 319.0 Weakly correlated
673 MER34B 1 n.s 87.0 Weakly correlated
674 MER41G 1 n.s 74.0 Weakly correlated
675 MER57C1 1 n.s 74.0 Weakly correlated
676 MER57E1 1 n.s 87.0 Weakly correlated
677 MER61B 1 n.s 43.0 Moderately correlated
678 MER65B 1 n.s 74.0 Weakly correlated
679 MER65D 1 n.s 87.0 Weakly correlated
680 MER70C 1 n.s 99.0 Weakly correlated
681 MER83B 1 n.s 43.0 Moderately correlated
682 MER87 1 n.s 43.0 Moderately correlated
683 MER92C 1 n.s 99.0 Weakly correlated
684 MLT1A1-int 1 n.s 87.0 Weakly correlated
685 MLT1D-int 1 n.s 99.0 Weakly correlated
686 MLT1E1A-int 1 n.s 99.0 Weakly correlated
687 MLT1J1-int 1 n.s 99.0 Weakly correlated
688 MLT1L-int 1 * 99.0 Weakly correlated
689 MLT2E 1 n.s 99.0 Weakly correlated
690 MSTC-int 1 n.s 74.0 Weakly correlated
691 SVA_B 1 n.s 15.2 Weakly correlated
692 UCON86 1 ** 319.0 Weakly correlated
693 X2_LINE 1 n.s 319.0 Weakly correlated
694 X7C_LINE 1 n.s 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 THE1D 5374 **** 43.0 Moderately correlated
2 MSTA 5071 **** 43.0 Moderately correlated
3 THE1C 4364 **** 43.0 Moderately correlated
4 MSTB 908 **** 43.0 Moderately correlated
5 L2a 325 n.s 99.0 Weakly correlated
6 L2c 180 n.s 99.0 Weakly correlated
7 THE1B 125 **** 43.0 Moderately correlated
8 L2b 110 n.s 99.0 Weakly correlated
9 MIR 58 n.s 99.0 Weakly correlated
10 L1PA7 44 n.s 74.0 Weakly correlated
11 MIRb 44 n.s 99.0 Weakly correlated
12 MLT1A0 42 n.s 99.0 Weakly correlated
13 MSTB1 38 **** 74.0 Weakly correlated
14 MLT1C 33 n.s 94.0 Weakly correlated
15 MIR3 24 n.s 99.0 Weakly correlated
16 MIRc 24 n.s 99.0 Weakly correlated
17 L1PA8 21 n.s 74.0 Weakly correlated
18 L1PA5 20 n.s 19.6 Weakly correlated
19 MLT1D 19 n.s 99.0 Weakly correlated
20 L2 18 n.s 99.0 Weakly correlated
21 AluJb 15 n.s 74.0 Weakly correlated
22 L1PB1 15 n.s 74.0 Weakly correlated
23 THE1A 15 n.s 43.0 Moderately correlated
24 L1PA11 15 n.s 74.0 Weakly correlated
25 L1PA13 15 n.s 74.0 Weakly correlated
26 AluSx1 14 n.s 74.0 Weakly correlated
27 MLT1B 13 n.s 99.0 Weakly correlated
28 AluSx 13 n.s 74.0 Weakly correlated
29 L1PREC2 13 n.s 43.0 Moderately correlated
30 L1ME1 12 n.s 99.0 Weakly correlated
31 L1MEc 12 n.s 99.0 Weakly correlated
32 L3 12 n.s 99.0 Weakly correlated
33 HERVK11-int 12 ** 28.9 Highly correlated
34 L1PA4 12 n.s 19.6 Weakly correlated
35 HAL1 11 n.s 99.0 Weakly correlated
36 L1PA15 11 n.s 74.0 Weakly correlated
37 L1MEd 10 n.s 99.0 Weakly correlated
38 L1PA14 10 n.s 74.0 Weakly correlated
39 L1M1 10 n.s 74.0 Weakly correlated
40 LTR16C 10 n.s 99.0 Weakly correlated
41 L1PA10 9 n.s 74.0 Weakly correlated
42 L1PBa 9 n.s 74.0 Weakly correlated
43 THE1D-int 8 n.s 28.9 Highly correlated
44 MLT1L 8 n.s 99.0 Weakly correlated
45 L1P3 8 n.s 74.0 Weakly correlated
46 AluY 7 n.s 74.0 Weakly correlated
47 ERV3-16A3_I-int 7 n.s 99.0 Weakly correlated
48 LTR33 7 n.s 99.0 Weakly correlated
49 LTR16A 7 n.s 99.0 Weakly correlated
50 HERVE_a-int 7 n.s 28.9 Highly correlated
51 L1M2 7 n.s 99.0 Weakly correlated
52 L1MEg 7 n.s 99.0 Weakly correlated
53 LTR50 7 n.s 99.0 Weakly correlated
54 ERVL-B4-int 6 n.s 99.0 Weakly correlated
55 HERVH-int 6 n.s 28.9 Highly correlated
56 L1PB4 6 n.s 99.0 Weakly correlated
57 L1MA4 6 n.s 87.0 Weakly correlated
58 L1PA3 6 n.s 19.6 Weakly correlated
59 MLT1F2 6 n.s 99.0 Weakly correlated
60 L1MA9 6 n.s 99.0 Weakly correlated
61 L1MC4 6 n.s 99.0 Weakly correlated
62 L1PA6 6 n.s 28.9 Highly correlated
63 L1PA12 6 n.s 74.0 Weakly correlated
64 L1MEf 6 n.s 99.0 Weakly correlated
65 L1PA17 5 n.s 74.0 Weakly correlated
66 L1PA8A 5 n.s 74.0 Weakly correlated
67 LTR49 5 n.s 74.0 Weakly correlated
68 AluSz6 5 n.s 74.0 Weakly correlated
69 AluJo 5 n.s 74.0 Weakly correlated
70 L1PA2 5 n.s 15.2 Weakly correlated
71 ERVL-E-int 5 n.s 99.0 Weakly correlated
72 MER65A 5 n.s 74.0 Weakly correlated
73 AluSq2 5 n.s 74.0 Weakly correlated
74 L1MC4a 5 n.s 99.0 Weakly correlated
75 L1MCa 5 n.s 99.0 Weakly correlated
76 MLT1E2 5 n.s 99.0 Weakly correlated
77 L1M4b 4 n.s 99.0 Weakly correlated
78 LTR12C 4 n.s 19.6 Weakly correlated
79 MLT1E1A 4 n.s 99.0 Weakly correlated
80 THE1B-int 4 n.s 43.0 Moderately correlated
81 HAL1ME 4 n.s 99.0 Weakly correlated
82 MLT1J 4 n.s 99.0 Weakly correlated
83 AluSz 4 n.s 74.0 Weakly correlated
84 L3b 4 n.s 99.0 Weakly correlated
85 MLT1A 4 n.s 99.0 Weakly correlated
86 MLT1H2 4 n.s 99.0 Weakly correlated
87 L1M2a 4 n.s 87.0 Weakly correlated
88 L1MA3 4 n.s 74.0 Weakly correlated
89 L1MA4A 4 n.s 87.0 Weakly correlated
90 LTR16E1 4 n.s 99.0 Weakly correlated
91 MER52A 4 n.s 74.0 Weakly correlated
92 MLT1K 4 n.s 99.0 Weakly correlated
93 L1MB7 4 n.s 99.0 Weakly correlated
94 L1MC1 4 n.s 99.0 Weakly correlated
95 LTR78 4 n.s 99.0 Weakly correlated
96 MLT2D 4 n.s 99.0 Weakly correlated
97 AluJr 4 n.s 74.0 Weakly correlated
98 MER4B-int 4 n.s 99.0 Weakly correlated
99 MER68 4 n.s 99.0 Weakly correlated
100 MLT1I 4 n.s 99.0 Weakly correlated
101 HERVL-int 3 n.s 74.0 Weakly correlated
102 L1M3f 3 n.s 87.0 Weakly correlated
103 L1M4a1 3 n.s 99.0 Weakly correlated
104 L1ME2 3 n.s 99.0 Weakly correlated
105 LTR87 3 n.s 99.0 Weakly correlated
106 MLT1O 3 n.s 99.0 Weakly correlated
107 MSTD-int 3 n.s 74.0 Weakly correlated
108 L1M5 3 n.s 99.0 Weakly correlated
109 L1ME3 3 n.s 99.0 Weakly correlated
110 L1PA16 3 n.s 74.0 Weakly correlated
111 L4_A_Mam 3 n.s 99.0 Weakly correlated
112 LTR33B 3 n.s 99.0 Weakly correlated
113 LTR40b 3 n.s 99.0 Weakly correlated
114 HERVL18-int 3 n.s 43.0 Moderately correlated
115 L1MA2 3 n.s 74.0 Weakly correlated
116 MLT1A1 3 n.s 87.0 Weakly correlated
117 MamRTE1 3 n.s 99.0 Weakly correlated
118 HERVE-int 3 n.s 19.6 Weakly correlated
119 L1M4 3 n.s 99.0 Weakly correlated
120 MER21C 3 n.s 99.0 Weakly correlated
121 MSTD 3 n.s 74.0 Weakly correlated
122 L1MA5A 3 n.s 87.0 Weakly correlated
123 L1MB5 3 n.s 99.0 Weakly correlated
124 L1MC5a 3 n.s 99.0 Weakly correlated
125 LTR16 3 n.s 99.0 Weakly correlated
126 LTR33A_ 3 n.s 99.0 Weakly correlated
127 LTR40a 3 n.s 99.0 Weakly correlated
128 MER39 3 n.s 74.0 Weakly correlated
129 MLT1F 3 n.s 99.0 Weakly correlated
130 L1PB2 3 n.s 74.0 Weakly correlated
131 LTR3 3 ** 28.9 Highly correlated
132 MER49 3 n.s 43.0 Moderately correlated
133 MLT1H 3 n.s 99.0 Weakly correlated
134 L1M2c 3 n.s 87.0 Weakly correlated
135 L1MB3 3 n.s 99.0 Weakly correlated
136 L1ME3A 3 n.s 99.0 Weakly correlated
137 L1HS 2 n.s 8.6 Weakly correlated
138 L1M4a2 2 n.s 99.0 Weakly correlated
139 L1MA1 2 n.s 74.0 Weakly correlated
140 L2-3_Crp 2 n.s 431.0 Weakly correlated
141 LTR1A2 2 n.s 43.0 Moderately correlated
142 LTR36 2 n.s 74.0 Weakly correlated
143 LTR85a 2 n.s 99.0 Weakly correlated
144 MER4D1 2 n.s 74.0 Weakly correlated
145 MER52-int 2 n.s 99.0 Weakly correlated
146 MLT2A2 2 n.s 74.0 Weakly correlated
147 L1M7 2 n.s 99.0 Weakly correlated
148 LTR40c 2 n.s 99.0 Weakly correlated
149 LTR82B 2 n.s 99.0 Weakly correlated
150 MER70B 2 n.s 87.0 Weakly correlated
151 MLT1J1 2 n.s 99.0 Weakly correlated
152 MamGypLTR2c 2 n.s 99.0 Weakly correlated
153 MamRep605 2 n.s 99.0 Weakly correlated
154 FLAM_C 2 n.s 74.0 Weakly correlated
155 L1ME5 2 n.s 99.0 Weakly correlated
156 MER73 2 n.s 87.0 Weakly correlated
157 AluSq 2 n.s 74.0 Weakly correlated
158 HERV17-int 2 n.s 28.9 Highly correlated
159 LTR1D1 2 n.s 43.0 Moderately correlated
160 LTR59 2 * 43.0 Moderately correlated
161 MER41-int 2 n.s 74.0 Weakly correlated
162 MER92B 2 n.s 99.0 Weakly correlated
163 MSTA-int 2 n.s 43.0 Moderately correlated
164 THE1C-int 2 n.s 43.0 Moderately correlated
165 HUERS-P3-int 2 n.s 43.0 Moderately correlated
166 L1MD2 2 n.s 99.0 Weakly correlated
167 L1MD3 2 n.s 99.0 Weakly correlated
168 L1ME3G 2 n.s 99.0 Weakly correlated
169 L1PB3 2 n.s 74.0 Weakly correlated
170 LTR41 2 n.s 99.0 Weakly correlated
171 LTR48 2 n.s 74.0 Weakly correlated
172 LTR80A 2 n.s 99.0 Weakly correlated
173 MER54A 2 n.s 87.0 Weakly correlated
174 MLT1G1 2 n.s 99.0 Weakly correlated
175 HERV35I-int 2 n.s 43.0 Moderately correlated
176 L1MA8 2 n.s 87.0 Weakly correlated
177 L1MC3 2 n.s 99.0 Weakly correlated
178 L1MC5 2 n.s 99.0 Weakly correlated
179 L1PBb 2 n.s 74.0 Weakly correlated
180 MER4A 2 n.s 74.0 Weakly correlated
181 MER66-int 2 n.s 43.0 Moderately correlated
182 AluJr4 2 n.s 74.0 Weakly correlated
183 AluSx3 2 n.s 74.0 Weakly correlated
184 L1ME3Cz 2 n.s 99.0 Weakly correlated
185 L1ME4c 2 n.s 99.0 Weakly correlated
186 L1MEb 2 n.s 99.0 Weakly correlated
187 LTR49-int 2 n.s 74.0 Weakly correlated
188 LTR54B 2 n.s 74.0 Weakly correlated
189 MER50 2 n.s 43.0 Moderately correlated
190 MLT1E3 2 n.s 99.0 Weakly correlated
191 ERV24_Prim-int 2 n.s 74.0 Weakly correlated
192 L1MA5 2 n.s 87.0 Weakly correlated
193 L1MB4 2 n.s 99.0 Weakly correlated
194 L1MC2 2 n.s 99.0 Weakly correlated
195 L1MCc 2 n.s 99.0 Weakly correlated
196 L1MD1 2 n.s 99.0 Weakly correlated
197 L1MDa 2 n.s 99.0 Weakly correlated
198 LTR16E2 2 n.s 99.0 Weakly correlated
199 MER21-int 2 n.s 99.0 Weakly correlated
200 MLT1F-int 2 n.s 99.0 Weakly correlated
201 MLT1G 2 n.s 99.0 Weakly correlated
202 AluSp 1 n.s 74.0 Weakly correlated
203 ERVL47-int 1 n.s 74.0 Weakly correlated
204 L1M3c 1 n.s 99.0 Weakly correlated
205 L1MA7 1 n.s 87.0 Weakly correlated
206 L1MB8 1 n.s 99.0 Weakly correlated
207 L1MC 1 n.s 99.0 Weakly correlated
208 LTR16D 1 n.s 99.0 Weakly correlated
209 LTR26E 1 n.s 74.0 Weakly correlated
210 LTR35 1 n.s 43.0 Moderately correlated
211 LTR43-int 1 n.s 74.0 Weakly correlated
212 LTR79 1 n.s 99.0 Weakly correlated
213 MER31B 1 n.s 99.0 Weakly correlated
214 MER61A 1 n.s 43.0 Moderately correlated
215 MER74A 1 n.s 99.0 Weakly correlated
216 PABL_B 1 n.s 43.0 Moderately correlated
217 HERVK13-int 1 n.s 19.6 Weakly correlated
218 Harlequin-int 1 n.s 74.0 Weakly correlated
219 L1ME3E 1 n.s 99.0 Weakly correlated
220 L1P1 1 n.s 19.6 Weakly correlated
221 L1P2 1 n.s 28.9 Highly correlated
222 L1P4 1 n.s 74.0 Weakly correlated
223 LTR105_Mam 1 n.s 99.0 Weakly correlated
224 LTR30 1 n.s 28.9 Highly correlated
225 LTR71A 1 n.s 43.0 Moderately correlated
226 LTR76 1 n.s 74.0 Weakly correlated
227 LTR81B 1 n.s 99.0 Weakly correlated
228 LTR84a 1 n.s 99.0 Weakly correlated
229 MER57A1 1 n.s 43.0 Moderately correlated
230 MER57B2 1 n.s 43.0 Moderately correlated
231 MER65D 1 n.s 87.0 Weakly correlated
232 MLT1E2-int 1 n.s 99.0 Weakly correlated
233 MLT1J2 1 n.s 99.0 Weakly correlated
234 MLT1N2 1 n.s 99.0 Weakly correlated
235 Plat_L3 1 n.s 99.0 Weakly correlated
236 AluSg7 1 n.s 74.0 Weakly correlated
237 FRAM 1 n.s 74.0 Weakly correlated
238 HERVL74-int 1 n.s 99.0 Weakly correlated
239 L1MB1 1 n.s 99.0 Weakly correlated
240 L1MB2 1 n.s 99.0 Weakly correlated
241 L1MEg1 1 n.s 99.0 Weakly correlated
242 LTR108e_Mam 1 n.s 99.0 Weakly correlated
243 LTR16B2 1 n.s 99.0 Weakly correlated
244 LTR23 1 n.s 74.0 Weakly correlated
245 LTR28B 1 n.s 43.0 Moderately correlated
246 MER31-int 1 n.s 99.0 Weakly correlated
247 MER76 1 n.s 99.0 Weakly correlated
248 MER77B 1 n.s 99.0 Weakly correlated
249 MamGypLTR1a 1 n.s 99.0 Weakly correlated
250 MamRep1151 1 n.s 99.0 Weakly correlated
251 HERV16-int 1 n.s 99.0 Weakly correlated
252 L1M6 1 n.s 99.0 Weakly correlated
253 L1MA6 1 n.s 87.0 Weakly correlated
254 L1ME2z 1 n.s 99.0 Weakly correlated
255 L1ME3D 1 n.s 99.0 Weakly correlated
256 LTR06 1 * 74.0 Weakly correlated
257 LTR101_Mam 1 n.s 99.0 Weakly correlated
258 LTR1A1 1 n.s 43.0 Moderately correlated
259 LTR3A 1 n.s 28.9 Highly correlated
260 LTR51 1 n.s 74.0 Weakly correlated
261 LTR78B 1 n.s 99.0 Weakly correlated
262 LTR8 1 n.s 43.0 Moderately correlated
263 MER4-int 1 n.s 74.0 Weakly correlated
264 MER54B 1 n.s 87.0 Weakly correlated
265 MIR1_Amn 1 n.s 319.0 Weakly correlated
266 MLT1G3-int 1 n.s 99.0 Weakly correlated
267 MLT1H-int 1 n.s 99.0 Weakly correlated
268 MamSINE1 1 n.s 99.0 Weakly correlated
269 PABL_A 1 n.s 43.0 Moderately correlated
270 AluSg 1 n.s 74.0 Weakly correlated
271 FLAM_A 1 n.s 74.0 Weakly correlated
272 HERVFH21-int 1 n.s 28.9 Highly correlated
273 HERVH48-int 1 n.s 28.9 Highly correlated
274 HERVL32-int 1 n.s 43.0 Moderately correlated
275 L1M3 1 n.s 99.0 Weakly correlated
276 L1M4c 1 n.s 99.0 Weakly correlated
277 L1MA10 1 n.s 99.0 Weakly correlated
278 L1ME3F 1 n.s 99.0 Weakly correlated
279 L1ME4b 1 n.s 99.0 Weakly correlated
280 LOR1a 1 n.s 74.0 Weakly correlated
281 LTR102_Mam 1 n.s 99.0 Weakly correlated
282 LTR12D 1 n.s 19.6 Weakly correlated
283 LTR12_ 1 n.s 28.9 Highly correlated
284 LTR1F 1 n.s 43.0 Moderately correlated
285 LTR22B2 1 * 28.9 Highly correlated
286 LTR2752 1 n.s 43.0 Moderately correlated
287 LTR32 1 n.s 43.0 Moderately correlated
288 LTR4 1 n.s 28.9 Highly correlated
289 LTR53-int 1 n.s 99.0 Weakly correlated
290 LTR67B 1 n.s 99.0 Weakly correlated
291 LTR8B 1 n.s 43.0 Moderately correlated
292 LTR9D 1 n.s 43.0 Moderately correlated
293 MER34C2 1 n.s 74.0 Weakly correlated
294 MER50-int 1 n.s 43.0 Moderately correlated
295 MER61-int 1 n.s 43.0 Moderately correlated
296 MER74B 1 n.s 99.0 Weakly correlated
297 MLT1J-int 1 n.s 99.0 Weakly correlated
298 Mam_R4 1 n.s 99.0 Weakly correlated
299 HAL1M8 1 n.s 99.0 Weakly correlated
300 HERVK3-int 1 n.s 28.9 Highly correlated
301 L1M3de 1 n.s 99.0 Weakly correlated
302 L1P4a 1 n.s 74.0 Weakly correlated
303 LTR26C 1 n.s 0.0 Weakly correlated
304 LTR27D 1 n.s 43.0 Moderately correlated
305 LTR41B 1 n.s 99.0 Weakly correlated
306 LTR48B 1 n.s 74.0 Weakly correlated
307 LTR52 1 n.s 99.0 Weakly correlated
308 LTR82A 1 n.s 99.0 Weakly correlated
309 LTR88b 1 n.s 99.0 Weakly correlated
310 MER11B 1 n.s 19.6 Weakly correlated
311 MER4E 1 n.s 74.0 Weakly correlated
312 MLT1E1 1 n.s 99.0 Weakly correlated
313 MLT1M 1 n.s 99.0 Weakly correlated
314 MamGypsy2-I 1 n.s 99.0 Weakly correlated
315 MamGypsy2-LTR 1 n.s 99.0 Weakly correlated
316 Penelope1_Vert 1 n.s 319.0 Weakly correlated
317 THE1A-int 1 n.s 43.0 Moderately correlated
318 HAL1b 1 n.s 99.0 Weakly correlated
319 HERVL40-int 1 n.s 99.0 Weakly correlated
320 L1ME4a 1 n.s 99.0 Weakly correlated
321 LTR16A1 1 n.s 99.0 Weakly correlated
322 LTR2 1 n.s 28.9 Highly correlated
323 LTR33A 1 n.s 99.0 Weakly correlated
324 MER11A 1 n.s 28.9 Highly correlated
325 MER21B 1 n.s 99.0 Weakly correlated
326 MER41B 1 n.s 74.0 Weakly correlated
327 MER57E3 1 n.s 74.0 Weakly correlated
328 MER61D 1 n.s 43.0 Moderately correlated
329 MER70A 1 n.s 87.0 Weakly correlated
330 MLT1G-int 1 n.s 99.0 Weakly correlated
331 MLT1H1 1 n.s 99.0 Weakly correlated
332 MSTA1 1 n.s 74.0 Weakly correlated
333 MSTC 1 n.s 74.0 Weakly correlated
334 AluYc 1 n.s 74.0 Weakly correlated
335 L1ME3B 1 n.s 99.0 Weakly correlated
336 L1MEi 1 n.s 99.0 Weakly correlated
337 L1PA15-16 1 n.s 74.0 Weakly correlated
338 L4_B_Mam 1 n.s 99.0 Weakly correlated
339 LTR25 1 n.s 43.0 Moderately correlated
340 LTR3B 1 n.s 28.9 Highly correlated
341 LTR57-int 1 n.s 74.0 Weakly correlated
342 LTR90A 1 n.s 99.0 Weakly correlated
343 MER52D 1 n.s 74.0 Weakly correlated
344 MER70-int 1 n.s 99.0 Weakly correlated
345 MER89 1 n.s 99.0 Weakly correlated
346 MSTB-int 1 n.s 43.0 Moderately correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ERV3-16A3_I-INT 99.0 Weakly correlated
2 HERVE_A-INT 28.9 Highly correlated
3 HERVK11-INT 28.9 Highly correlated
4 L2A 99.0 Weakly correlated
5 L2B 99.0 Weakly correlated
6 L2C 99.0 Weakly correlated
7 LTR50 99.0 Weakly correlated
8 MLT1L 99.0 Weakly correlated
9 MSTA 43.0 Moderately correlated
10 MSTB 43.0 Moderately correlated
11 THE1A 43.0 Moderately correlated
12 THE1B 43.0 Moderately correlated
13 THE1C 43.0 Moderately correlated
14 THE1D 43.0 Moderately correlated