ZRdb KZFP & Repeats
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Human_ZNF641

  • Protein
    Zinc finger protein 641
  • Length
    438
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
  • NCBI_ID
Sequence:
MQAEDRSQFGSAAEMLSEQTAALGTGWESMNVQLDGAEPQVERGSQEERPWRTVPGPLEHLCCDLEEEPQSLQEKAQSAPWVPAIPQEGNTGDWEMAAALLAAGSQGLVTIKDVSLCFSQEEWRSLDPSQTDFYGEYVMQENCGIVVSLRFPIPKLDMLSQLEGGEEQWVPDPQDLEERDILRVTYTGDGSEHEGDTPELEAEPPRMLSSVSEDTVLWNPEHDESWDSMPSSSRGMLLGPPFLQEDSFSNLLCSTEMDSLLRPHTCPQCGKQFVWGSHLARHQQTHTGERPYSCLKCEKTFGRRHHLIRHQKTHLHDKTSRCSECGKNFRCNSHLASHQRVHAEGKSCKGQEVGESPGTRKRQRAPPVPKCHVCTECGKSFGRRHHLVRHWLTHTGEKPFQCPRCEKSFGRKHHLDRHLLTHQGQSPRNSWDRGTSVF
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
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# Domain name Pos
1 KRAB 109..181
2 C2h2 264..286
3 C2h2 292..314
4 C2h2 320..342
5 C2h2 372..394
6 C2h2 400..422
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component cytosol
2 Cellular Component nucleoplasm
3 Cellular Component nucleus
4 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
5 Molecular Function metal ion binding
6 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
7 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluSx 186 **** 74.0 Weakly correlated
2 AluSx1 174 **** 74.0 Weakly correlated
3 AluSz 147 **** 74.0 Weakly correlated
4 L2a 144 n.s 99.0 Highly correlated
5 MIRb 143 *** 99.0 Highly correlated
6 AluJb 126 * 74.0 Weakly correlated
7 MIR 122 *** 99.0 Highly correlated
8 AluY 118 n.s 74.0 Weakly correlated
9 L2c 92 n.s 99.0 Highly correlated
10 AluSq2 87 *** 74.0 Weakly correlated
11 L2b 85 *** 99.0 Highly correlated
12 AluSp 82 **** 74.0 Weakly correlated
13 L2 79 **** 99.0 Highly correlated
14 AluJo 76 ** 74.0 Weakly correlated
15 AluJr 75 n.s 74.0 Weakly correlated
16 AluSx3 71 **** 74.0 Weakly correlated
17 L1MC4 68 **** 99.0 Highly correlated
18 AluSg 63 **** 74.0 Weakly correlated
19 MIRc 62 ** 99.0 Highly correlated
20 MIR3 61 **** 99.0 Highly correlated
21 AluSc 47 ** 74.0 Weakly correlated
22 SVA_D 40 **** 15.2 Weakly correlated
23 AluSq 37 **** 74.0 Weakly correlated
24 LTR8 34 **** 43.0 Weakly correlated
25 AluSc8 31 * 74.0 Weakly correlated
26 AluSz6 28 n.s 74.0 Weakly correlated
27 HAL1 22 n.s 99.0 Highly correlated
28 SVA_F 20 **** 0.0 Weakly correlated
29 AluYj4 19 **** 0.0 Weakly correlated
30 HERVIP10FH-int 18 **** 28.9 Weakly correlated
31 L3 18 n.s 99.0 Highly correlated
32 AluSg7 17 ** 74.0 Weakly correlated
33 L1MEd 17 n.s 99.0 Highly correlated
34 L1MEg 17 n.s 99.0 Highly correlated
35 L1PA2 16 n.s 15.2 Weakly correlated
36 FLAM_C 15 * 74.0 Weakly correlated
37 L1MB3 15 n.s 99.0 Highly correlated
38 LTR13 15 **** 19.6 Weakly correlated
39 FRAM 14 **** 74.0 Weakly correlated
40 PRIMA4-int 14 **** 74.0 Weakly correlated
41 AluJr4 13 n.s 74.0 Weakly correlated
42 L1ME4a 13 n.s 99.0 Highly correlated
43 LTR12C 13 n.s 19.6 Weakly correlated
44 MIR1_Amn 13 **** 319.0 Weakly correlated
45 AluSg4 12 * 74.0 Weakly correlated
46 AluSx4 12 n.s 74.0 Weakly correlated
47 L1MA9 12 n.s 99.0 Highly correlated
48 L1MC5a 12 n.s 99.0 Highly correlated
49 LTR10A 12 **** 28.9 Weakly correlated
50 SVA_B 12 **** 15.2 Weakly correlated
51 SVA_E 12 **** 0.0 Weakly correlated
52 AluSc5 11 * 74.0 Weakly correlated
53 L1M4 11 n.s 99.0 Highly correlated
54 MLT1B 11 n.s 99.0 Highly correlated
55 AluYc 10 *** 74.0 Weakly correlated
56 L1ME3G 10 n.s 99.0 Highly correlated
57 L1MEc 10 n.s 99.0 Highly correlated
58 L1PA3 10 n.s 19.6 Weakly correlated
59 MamGypLTR3 10 **** 99.0 Highly correlated
60 Alu 9 **** 74.0 Weakly correlated
61 L1MB2 9 n.s 99.0 Highly correlated
62 L1ME1 9 n.s 99.0 Highly correlated
63 L1PB1 9 n.s 74.0 Weakly correlated
64 HERV17-int 8 ** 28.9 Weakly correlated
65 HERVK-int 8 *** 28.9 Weakly correlated
66 L1M1 8 n.s 74.0 Weakly correlated
67 L1M3f 8 *** 87.0 Weakly correlated
68 L1MA4 8 n.s 87.0 Weakly correlated
69 L1ME4b 8 n.s 99.0 Highly correlated
70 L1P1 8 n.s 19.6 Weakly correlated
71 LTR41B 8 **** 99.0 Highly correlated
72 MER4-int 8 n.s 74.0 Weakly correlated
73 MER50 8 * 43.0 Weakly correlated
74 AluYa5 7 * 15.2 Weakly correlated
75 HUERS-P3-int 7 ** 43.0 Weakly correlated
76 L1M2 7 n.s 99.0 Highly correlated
77 L1M5 7 n.s 99.0 Highly correlated
78 L1MB7 7 n.s 99.0 Highly correlated
79 AluSq10 6 ** 74.0 Weakly correlated
80 AluYm1 6 n.s 19.6 Weakly correlated
81 FLAM_A 6 n.s 74.0 Weakly correlated
82 HUERS-P3b-int 6 *** 43.0 Weakly correlated
83 L1ME3Cz 6 n.s 99.0 Highly correlated
84 L1P4 6 n.s 74.0 Weakly correlated
85 L1PA4 6 n.s 19.6 Weakly correlated
86 LTR9 6 *** 43.0 Weakly correlated
87 MLT1D 6 n.s 99.0 Highly correlated
88 MLT1H 6 n.s 99.0 Highly correlated
89 MSTD 6 n.s 74.0 Weakly correlated
90 HERVH48-int 5 **** 28.9 Weakly correlated
91 L1MB8 5 n.s 99.0 Highly correlated
92 L1MC4a 5 n.s 99.0 Highly correlated
93 L1MD2 5 n.s 99.0 Highly correlated
94 L1ME3B 5 n.s 99.0 Highly correlated
95 L1P3 5 n.s 74.0 Weakly correlated
96 L1PA5 5 n.s 19.6 Weakly correlated
97 LTR41 5 ** 99.0 Highly correlated
98 MLT1A 5 n.s 99.0 Highly correlated
99 MLT1E2 5 n.s 99.0 Highly correlated
100 MamRTE1 5 n.s 99.0 Highly correlated
101 SVA_A 5 ** 19.6 Weakly correlated
102 SVA_C 5 ** 15.2 Weakly correlated
103 AluSq4 4 * 74.0 Weakly correlated
104 ERV24_Prim-int 4 ** 74.0 Weakly correlated
105 HAL1b 4 n.s 99.0 Highly correlated
106 L1MA3 4 n.s 74.0 Weakly correlated
107 L1MA5 4 n.s 87.0 Weakly correlated
108 L1MA7 4 n.s 87.0 Weakly correlated
109 L1MA8 4 n.s 87.0 Weakly correlated
110 L1MB5 4 n.s 99.0 Highly correlated
111 L1MC1 4 n.s 99.0 Highly correlated
112 L1ME2z 4 n.s 99.0 Highly correlated
113 L1ME3A 4 n.s 99.0 Highly correlated
114 L1ME4c 4 n.s 99.0 Highly correlated
115 L1PA16 4 n.s 74.0 Weakly correlated
116 LTR33 4 n.s 99.0 Highly correlated
117 MER66B 4 * 43.0 Weakly correlated
118 MLT1K 4 n.s 99.0 Highly correlated
119 MLT2B4 4 n.s 99.0 Highly correlated
120 AluYk4 3 * 15.2 Weakly correlated
121 AmnSINE1 3 * 319.0 Weakly correlated
122 HAL1ME 3 n.s 99.0 Highly correlated
123 L1HS 3 n.s 8.6 Weakly correlated
124 L1M3 3 n.s 99.0 Highly correlated
125 L1M4c 3 n.s 99.0 Highly correlated
126 L1M6 3 n.s 99.0 Highly correlated
127 L1MB1 3 n.s 99.0 Highly correlated
128 L1MC5 3 n.s 99.0 Highly correlated
129 L1MD1 3 n.s 99.0 Highly correlated
130 L1ME2 3 n.s 99.0 Highly correlated
131 L1ME3F 3 n.s 99.0 Highly correlated
132 L1MEf 3 n.s 99.0 Highly correlated
133 L1MEi 3 n.s 99.0 Highly correlated
134 L1PA13 3 n.s 74.0 Weakly correlated
135 L1PA17 3 n.s 74.0 Weakly correlated
136 L1PB4 3 n.s 99.0 Highly correlated
137 L1PREC2 3 n.s 43.0 Weakly correlated
138 LTR10F 3 ** 28.9 Weakly correlated
139 LTR12E 3 *** 19.6 Weakly correlated
140 LTR12F 3 * 28.9 Weakly correlated
141 LTR16 3 n.s 99.0 Highly correlated
142 LTR18A 3 **** 43.0 Weakly correlated
143 LTR35A 3 **** 43.0 Weakly correlated
144 LTR71B 3 *** 43.0 Weakly correlated
145 MER39B 3 n.s 74.0 Weakly correlated
146 MER41B 3 n.s 74.0 Weakly correlated
147 MER57E3 3 **** 74.0 Weakly correlated
148 MER65-int 3 n.s 87.0 Weakly correlated
149 MLT1A0 3 n.s 99.0 Highly correlated
150 MLT1C 3 n.s 94.0 Weakly correlated
151 MLT1F 3 n.s 99.0 Highly correlated
152 MLT1F1 3 n.s 99.0 Highly correlated
153 MLT1J 3 n.s 99.0 Highly correlated
154 MSTC 3 n.s 74.0 Weakly correlated
155 AluYb8 2 n.s 15.2 Weakly correlated
156 AluYf1 2 n.s 19.6 Weakly correlated
157 AluYk2 2 n.s 19.6 Weakly correlated
158 ERV3-16A3_LTR 2 n.s 99.0 Highly correlated
159 HERV9-int 2 n.s 28.9 Weakly correlated
160 L1MA4A 2 n.s 87.0 Weakly correlated
161 L1MC 2 n.s 99.0 Highly correlated
162 L1MC3 2 n.s 99.0 Highly correlated
163 L1MCc 2 n.s 99.0 Highly correlated
164 L1MD 2 n.s 99.0 Highly correlated
165 L1MDa 2 n.s 99.0 Highly correlated
166 L1MEg2 2 * 99.0 Highly correlated
167 L1P4a 2 n.s 74.0 Weakly correlated
168 L1PA14 2 n.s 74.0 Weakly correlated
169 L1PA15-16 2 n.s 74.0 Weakly correlated
170 L2-3_Crp 2 n.s 431.0 Weakly correlated
171 L3b 2 n.s 99.0 Highly correlated
172 LTR10C 2 * 28.9 Weakly correlated
173 LTR12D 2 n.s 19.6 Weakly correlated
174 LTR13_ 2 *** 28.9 Weakly correlated
175 LTR16C 2 n.s 99.0 Highly correlated
176 LTR26 2 n.s 74.0 Weakly correlated
177 LTR33A 2 n.s 99.0 Highly correlated
178 LTR40b 2 n.s 99.0 Highly correlated
179 LTR41C 2 * 99.0 Highly correlated
180 LTR43-int 2 ** 74.0 Weakly correlated
181 LTR46 2 ** 43.0 Weakly correlated
182 LTR57 2 ** 74.0 Weakly correlated
183 LTR64 2 ** 74.0 Weakly correlated
184 LTR65 2 ** 99.0 Highly correlated
185 LTR85b 2 * 99.0 Highly correlated
186 LTR85c 2 * 99.0 Highly correlated
187 LTR88c 2 * 99.0 Highly correlated
188 LTR91 2 *** 99.0 Highly correlated
189 LTR9A1 2 * 43.0 Weakly correlated
190 MER4A 2 n.s 74.0 Weakly correlated
191 MER4B-int 2 n.s 99.0 Highly correlated
192 MER4C 2 * 74.0 Weakly correlated
193 MER4CL34 2 n.s 43.0 Weakly correlated
194 MER50-int 2 n.s 43.0 Weakly correlated
195 MER52-int 2 n.s 99.0 Highly correlated
196 MER61B 2 * 43.0 Weakly correlated
197 MER61D 2 ** 43.0 Weakly correlated
198 MLT1A1 2 n.s 87.0 Weakly correlated
199 MLT1H2 2 n.s 99.0 Highly correlated
200 MLT1I 2 n.s 99.0 Highly correlated
201 MLT1L-int 2 **** 99.0 Highly correlated
202 MLT1O 2 n.s 99.0 Highly correlated
203 MLT2A2 2 n.s 74.0 Weakly correlated
204 MLT2C1 2 n.s 99.0 Highly correlated
205 X7A_LINE 2 ** 319.0 Weakly correlated
206 AluYc3 1 n.s 74.0 Weakly correlated
207 AluYg6 1 n.s 15.2 Weakly correlated
208 AluYh3 1 n.s 15.2 Weakly correlated
209 AluYh3a3 1 * 15.2 Weakly correlated
210 AluYh9 1 *** 15.2 Weakly correlated
211 AluYi6 1 * 15.2 Weakly correlated
212 CR1-3_Croc 1 n.s 319.0 Weakly correlated
213 CR1-L3A_Croc 1 ** 319.0 Weakly correlated
214 CR1_Mam 1 n.s 99.0 Highly correlated
215 ERVL-B4-int 1 n.s 99.0 Highly correlated
216 FAM 1 n.s 87.0 Weakly correlated
217 HAL1M8 1 n.s 99.0 Highly correlated
218 HERV9N-int 1 n.s 19.6 Weakly correlated
219 HERV9NC-int 1 n.s 19.6 Weakly correlated
220 HERVFH21-int 1 n.s 28.9 Weakly correlated
221 HERVH-int 1 n.s 28.9 Weakly correlated
222 HERVI-int 1 n.s 28.9 Weakly correlated
223 HERVK11D-int 1 * 19.6 Weakly correlated
224 HERVKC4-int 1 * 28.9 Weakly correlated
225 HERVL40-int 1 n.s 99.0 Highly correlated
226 HERVS71-int 1 n.s 28.9 Weakly correlated
227 L1M2c 1 n.s 87.0 Weakly correlated
228 L1M3e 1 n.s 99.0 Highly correlated
229 L1M4a1 1 n.s 99.0 Highly correlated
230 L1M8 1 n.s 99.0 Highly correlated
231 L1MA2 1 n.s 74.0 Weakly correlated
232 L1MA5A 1 n.s 87.0 Weakly correlated
233 L1MCa 1 n.s 99.0 Highly correlated
234 L1MD3 1 n.s 99.0 Highly correlated
235 L1ME3 1 n.s 99.0 Highly correlated
236 L1ME3E 1 n.s 99.0 Highly correlated
237 L1ME5 1 n.s 99.0 Highly correlated
238 L1MEb 1 n.s 99.0 Highly correlated
239 L1MEh 1 n.s 99.0 Highly correlated
240 L1P2 1 n.s 28.9 Weakly correlated
241 L1PA11 1 n.s 74.0 Weakly correlated
242 L1PA12 1 n.s 74.0 Weakly correlated
243 L1PA15 1 n.s 74.0 Weakly correlated
244 L1PA6 1 n.s 28.9 Weakly correlated
245 L1PA7 1 n.s 74.0 Weakly correlated
246 L1PB 1 n.s 74.0 Weakly correlated
247 L1PB3 1 n.s 74.0 Weakly correlated
248 L4_B_Mam 1 n.s 99.0 Highly correlated
249 LOR1-int 1 n.s 74.0 Weakly correlated
250 LOR1a 1 n.s 74.0 Weakly correlated
251 LTR1 1 n.s 43.0 Weakly correlated
252 LTR16A 1 n.s 99.0 Highly correlated
253 LTR16A2 1 n.s 99.0 Highly correlated
254 LTR16E2 1 n.s 99.0 Highly correlated
255 LTR19A 1 n.s 43.0 Weakly correlated
256 LTR2 1 n.s 28.9 Weakly correlated
257 LTR23 1 n.s 74.0 Weakly correlated
258 LTR26C 1 n.s 0.0 Weakly correlated
259 LTR31 1 * 74.0 Weakly correlated
260 LTR33C 1 n.s 99.0 Highly correlated
261 LTR37-int 1 n.s 99.0 Highly correlated
262 LTR3B_ 1 * 28.9 Weakly correlated
263 LTR4 1 * 28.9 Weakly correlated
264 LTR40c 1 n.s 99.0 Highly correlated
265 LTR43 1 n.s 74.0 Weakly correlated
266 LTR50 1 n.s 99.0 Highly correlated
267 LTR51 1 n.s 74.0 Weakly correlated
268 LTR54B 1 n.s 74.0 Weakly correlated
269 LTR55 1 n.s 99.0 Highly correlated
270 LTR5B 1 n.s 28.9 Weakly correlated
271 LTR61 1 * 43.0 Weakly correlated
272 LTR66 1 n.s 43.0 Weakly correlated
273 LTR6A 1 n.s 28.9 Weakly correlated
274 LTR7 1 n.s 19.6 Weakly correlated
275 LTR75 1 * 99.0 Highly correlated
276 LTR79 1 n.s 99.0 Highly correlated
277 LTR7B 1 n.s 28.9 Weakly correlated
278 LTR86A2 1 * 99.0 Highly correlated
279 LTR88b 1 n.s 99.0 Highly correlated
280 MER101-int 1 n.s 74.0 Weakly correlated
281 MER11C 1 n.s 19.6 Weakly correlated
282 MER21A 1 n.s 74.0 Weakly correlated
283 MER21C 1 n.s 99.0 Highly correlated
284 MER31B 1 n.s 99.0 Highly correlated
285 MER34-int 1 n.s 99.0 Highly correlated
286 MER34C2 1 n.s 74.0 Weakly correlated
287 MER41A 1 n.s 74.0 Weakly correlated
288 MER41C 1 n.s 74.0 Weakly correlated
289 MER41G 1 * 74.0 Weakly correlated
290 MER49 1 n.s 43.0 Weakly correlated
291 MER4A1 1 n.s 74.0 Weakly correlated
292 MER4D 1 n.s 74.0 Weakly correlated
293 MER4D1 1 n.s 74.0 Weakly correlated
294 MER51A 1 n.s 43.0 Weakly correlated
295 MER52C 1 n.s 74.0 Weakly correlated
296 MER54B 1 n.s 87.0 Weakly correlated
297 MER57A-int 1 n.s 43.0 Weakly correlated
298 MER57A1 1 n.s 43.0 Weakly correlated
299 MER61F 1 * 43.0 Weakly correlated
300 MER66C 1 n.s 43.0 Weakly correlated
301 MER67A 1 n.s 99.0 Highly correlated
302 MER68B 1 n.s 99.0 Highly correlated
303 MER90 1 n.s 99.0 Highly correlated
304 MER92B 1 n.s 99.0 Highly correlated
305 MLT1F2 1 n.s 99.0 Highly correlated
306 MLT1G1 1 n.s 99.0 Highly correlated
307 MLT1G3 1 n.s 99.0 Highly correlated
308 MLT1H1 1 n.s 99.0 Highly correlated
309 MLT1J2 1 n.s 99.0 Highly correlated
310 MLT1L 1 n.s 99.0 Highly correlated
311 MLT1M 1 n.s 99.0 Highly correlated
312 MLT1N2 1 n.s 99.0 Highly correlated
313 MLT2D 1 n.s 99.0 Highly correlated
314 MSTA 1 n.s 43.0 Weakly correlated
315 MamGypLTR2b 1 n.s 99.0 Highly correlated
316 MamGypLTR3a 1 n.s 99.0 Highly correlated
317 MamGypsy2-I 1 n.s 99.0 Highly correlated
318 MamGypsy2-LTR 1 * 99.0 Highly correlated
319 MamRep1151 1 n.s 99.0 Highly correlated
320 MamSINE1 1 n.s 99.0 Highly correlated
321 Plat_L3 1 n.s 99.0 Highly correlated
322 THE1A 1 n.s 43.0 Weakly correlated
323 THE1B 1 n.s 43.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluSx 110 n.s 74.0 Weakly correlated
2 AluSx1 103 n.s 74.0 Weakly correlated
3 AluSz 92 n.s 74.0 Weakly correlated
4 AluY 73 n.s 74.0 Weakly correlated
5 AluJb 59 n.s 74.0 Weakly correlated
6 AluSp 53 n.s 74.0 Weakly correlated
7 AluSq2 52 n.s 74.0 Weakly correlated
8 AluSx3 47 *** 74.0 Weakly correlated
9 AluSg 43 n.s 74.0 Weakly correlated
10 L1MC4 42 ** 99.0 Highly correlated
11 AluJr 31 n.s 74.0 Weakly correlated
12 AluJo 29 n.s 74.0 Weakly correlated
13 AluSc 27 n.s 74.0 Weakly correlated
14 AluSq 21 n.s 74.0 Weakly correlated
15 AluSz6 17 n.s 74.0 Weakly correlated
16 AluSc8 15 n.s 74.0 Weakly correlated
17 L2a 14 n.s 99.0 Highly correlated
18 AluSg7 13 * 74.0 Weakly correlated
19 L2c 13 n.s 99.0 Highly correlated
20 HERVIP10FH-int 12 **** 28.9 Weakly correlated
21 HAL1 11 n.s 99.0 Highly correlated
22 L1MEd 9 n.s 99.0 Highly correlated
23 L1MEg 9 n.s 99.0 Highly correlated
24 AluYc 9 ** 74.0 Weakly correlated
25 L1ME4a 8 n.s 99.0 Highly correlated
26 MIRb 8 n.s 99.0 Highly correlated
27 AluSx4 8 n.s 74.0 Weakly correlated
28 PRIMA4-int 8 **** 74.0 Weakly correlated
29 AluJr4 7 n.s 74.0 Weakly correlated
30 L1PB1 7 n.s 74.0 Weakly correlated
31 L1MEc 7 n.s 99.0 Highly correlated
32 MLT1B 6 n.s 99.0 Highly correlated
33 L2 6 n.s 99.0 Highly correlated
34 AluSc5 6 n.s 74.0 Weakly correlated
35 AluSg4 6 n.s 74.0 Weakly correlated
36 L1MA9 5 n.s 99.0 Highly correlated
37 L1M2 5 n.s 99.0 Highly correlated
38 MER4-int 5 n.s 74.0 Weakly correlated
39 AluYj4 4 n.s 0.0 Weakly correlated
40 L1MB3 4 n.s 99.0 Highly correlated
41 MIR 4 n.s 99.0 Highly correlated
42 MIRc 4 n.s 99.0 Highly correlated
43 AluYm1 4 n.s 19.6 Weakly correlated
44 L1ME3Cz 4 n.s 99.0 Highly correlated
45 FLAM_C 4 n.s 74.0 Weakly correlated
46 AluSq4 4 * 74.0 Weakly correlated
47 L1M4 3 n.s 99.0 Highly correlated
48 L1P4 3 n.s 74.0 Weakly correlated
49 L1M1 3 n.s 74.0 Weakly correlated
50 L1MA4 3 n.s 87.0 Weakly correlated
51 L1MB2 3 n.s 99.0 Highly correlated
52 L1M4c 3 n.s 99.0 Highly correlated
53 L1ME3G 3 n.s 99.0 Highly correlated
54 FLAM_A 3 n.s 74.0 Weakly correlated
55 FRAM 3 n.s 74.0 Weakly correlated
56 SVA_A 2 n.s 19.6 Weakly correlated
57 AluYf1 2 n.s 19.6 Weakly correlated
58 L1PA2 2 n.s 15.2 Weakly correlated
59 HAL1b 2 n.s 99.0 Highly correlated
60 L1ME3F 2 n.s 99.0 Highly correlated
61 L2b 2 n.s 99.0 Highly correlated
62 MLT2C1 2 n.s 99.0 Highly correlated
63 HERV9-int 2 n.s 28.9 Weakly correlated
64 L1MA3 2 n.s 74.0 Weakly correlated
65 L1MB5 2 n.s 99.0 Highly correlated
66 MIR3 2 n.s 99.0 Highly correlated
67 Alu 2 n.s 74.0 Weakly correlated
68 HERV17-int 2 n.s 28.9 Weakly correlated
69 HERVK-int 2 n.s 28.9 Weakly correlated
70 L1MA5 2 n.s 87.0 Weakly correlated
71 L3 2 n.s 99.0 Highly correlated
72 L1MD 2 n.s 99.0 Highly correlated
73 L1MD2 2 n.s 99.0 Highly correlated
74 L1ME2 2 n.s 99.0 Highly correlated
75 L1PA17 2 n.s 74.0 Weakly correlated
76 AluSq10 2 n.s 74.0 Weakly correlated
77 AluYk4 2 n.s 15.2 Weakly correlated
78 L1P1 2 n.s 19.6 Weakly correlated
79 L1PB4 2 n.s 99.0 Highly correlated
80 L1MA8 1 n.s 87.0 Weakly correlated
81 L1MCa 1 n.s 99.0 Highly correlated
82 L1MCc 1 n.s 99.0 Highly correlated
83 L1PA4 1 n.s 19.6 Weakly correlated
84 LTR37-int 1 n.s 99.0 Highly correlated
85 LTR41B 1 n.s 99.0 Highly correlated
86 MLT1C 1 n.s 94.0 Weakly correlated
87 AluYh3a3 1 * 15.2 Weakly correlated
88 AluYi6 1 * 15.2 Weakly correlated
89 HERVH48-int 1 n.s 28.9 Weakly correlated
90 L1MEf 1 n.s 99.0 Highly correlated
91 L1PA14 1 n.s 74.0 Weakly correlated
92 LTR43 1 n.s 74.0 Weakly correlated
93 MER68B 1 n.s 99.0 Highly correlated
94 AluYb8 1 n.s 15.2 Weakly correlated
95 AluYk2 1 n.s 19.6 Weakly correlated
96 HAL1M8 1 n.s 99.0 Highly correlated
97 HAL1ME 1 n.s 99.0 Highly correlated
98 L1MDa 1 n.s 99.0 Highly correlated
99 L1ME3B 1 n.s 99.0 Highly correlated
100 L1ME3E 1 n.s 99.0 Highly correlated
101 L1PA5 1 n.s 19.6 Weakly correlated
102 LTR13_ 1 ** 28.9 Weakly correlated
103 LTR16 1 n.s 99.0 Highly correlated
104 LTR16C 1 n.s 99.0 Highly correlated
105 LTR31 1 * 74.0 Weakly correlated
106 MLT1H2 1 n.s 99.0 Highly correlated
107 MamGypLTR3 1 n.s 99.0 Highly correlated
108 MamGypsy2-I 1 n.s 99.0 Highly correlated
109 AluYh3 1 n.s 15.2 Weakly correlated
110 AluYh9 1 *** 15.2 Weakly correlated
111 L1MA2 1 n.s 74.0 Weakly correlated
112 L1MA4A 1 n.s 87.0 Weakly correlated
113 L1MA5A 1 n.s 87.0 Weakly correlated
114 L1MB8 1 n.s 99.0 Highly correlated
115 L1MD1 1 n.s 99.0 Highly correlated
116 L1ME1 1 n.s 99.0 Highly correlated
117 L1PA11 1 n.s 74.0 Weakly correlated
118 LTR55 1 n.s 99.0 Highly correlated
119 AluYc3 1 n.s 74.0 Weakly correlated
120 FAM 1 n.s 87.0 Weakly correlated
121 L1M3f 1 n.s 87.0 Weakly correlated
122 L1MC5a 1 n.s 99.0 Highly correlated
123 L1MEi 1 n.s 99.0 Highly correlated
124 L1PA15-16 1 n.s 74.0 Weakly correlated
125 L1PREC2 1 n.s 43.0 Weakly correlated
126 LTR57 1 * 74.0 Weakly correlated
127 MER41B 1 n.s 74.0 Weakly correlated
128 MER66C 1 n.s 43.0 Weakly correlated
129 MLT1I 1 n.s 99.0 Highly correlated
130 MamSINE1 1 n.s 99.0 Highly correlated
131 CR1-3_Croc 1 n.s 319.0 Weakly correlated
132 L1M8 1 n.s 99.0 Highly correlated
133 L1MC3 1 n.s 99.0 Highly correlated
134 L1P4a 1 n.s 74.0 Weakly correlated
135 L1PA6 1 n.s 28.9 Weakly correlated
136 MER41C 1 n.s 74.0 Weakly correlated
137 MER61F 1 * 43.0 Weakly correlated
138 MLT1F 1 n.s 99.0 Highly correlated
139 HERV9N-int 1 n.s 19.6 Weakly correlated
140 L1MC 1 n.s 99.0 Highly correlated
141 L1MD3 1 n.s 99.0 Highly correlated
142 L1ME4b 1 n.s 99.0 Highly correlated
143 L1PA12 1 n.s 74.0 Weakly correlated
144 LTR9A1 1 n.s 43.0 Weakly correlated
145 MER11C 1 n.s 19.6 Weakly correlated
146 MER39B 1 n.s 74.0 Weakly correlated
147 MLT1J 1 n.s 99.0 Highly correlated
148 SVA_B 1 n.s 15.2 Weakly correlated
149 AluYg6 1 n.s 15.2 Weakly correlated
150 ERV24_Prim-int 1 n.s 74.0 Weakly correlated
151 L1ME5 1 n.s 99.0 Highly correlated
152 L1PA16 1 n.s 74.0 Weakly correlated
153 L1PA3 1 n.s 19.6 Weakly correlated
154 LTR16A2 1 n.s 99.0 Highly correlated
155 LTR88c 1 n.s 99.0 Highly correlated
156 MLT1D 1 n.s 99.0 Highly correlated
157 MLT1N2 1 n.s 99.0 Highly correlated
158 MSTD 1 n.s 74.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 HAL1 99.0 Highly correlated
2 HERVIP10FH-INT 28.9 Weakly correlated
3 L1ME4A 99.0 Highly correlated
4 L1MEC 99.0 Highly correlated
5 L2A 99.0 Highly correlated
6 L2C 99.0 Highly correlated
7 PRIMA4-INT 74.0 Weakly correlated