ZRdb KZFP & Repeats
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Human_ZNF586

  • Protein
    Zinc finger protein 586
  • Length
    402
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    69.0 Mya
  • Time of Changing in binding specificity
    43.0 Mya
  • Uniprot_ID
  • NCBI_ID
Sequence:
MAAAAALRAPAQSSVTFEDVAVNFSLEEWSLLNEAQRCLYRDVMLETLTLISSLGCWHGGEDEAAPSKQSTCIHIYKDQGGHSGERPYECGEYRKLFKNKSCLTEPRRDHKHRNVRTGERPYECSKYGKLFHQKPTLHIHERFHTGQKTYECSECGKSFHQSSSLLQRQTLHTRERPYECIECGKAFAEKSSLINHRKVHSGAKRYECNECGKSFAYTSSLIKHRRIHTGERPYECSECGRSFAENSSLIKHLRVHTGERPYECVECGKSFRRSSSLLQHQRVHTRERPYECSECGKSFSLRSNLIHHQRVHTGERHECGQCGKSFSRKSSLIIHLRVHTGERPYECSDCGKSFAENSSLIKHLRVHTGERPYECIDCGKSFRHSSSFRRHQRVHTGMRPYK
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
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# Domain name Pos
1 KRAB 15..87
2 dec2h2 88..116
3 dec2h2 122..144
4 dec2h2 150..172
5 C2h2 178..200
6 C2h2 206..228
7 C2h2 234..256
8 C2h2 262..284
9 C2h2 290..312
10 C2h2 317..339
11 C2h2 345..367
12 C2h2 373..395
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 THE1B-int 1156 **** 43.0 Highly correlated
2 MSTA-int 559 **** 43.0 Highly correlated
3 THE1C-int 512 **** 43.0 Highly correlated
4 THE1D-int 484 **** 28.9 Weakly correlated
5 THE1A-int 402 **** 43.0 Highly correlated
6 MSTB-int 142 **** 43.0 Highly correlated
7 MSTB1-int 28 **** 74.0 Weakly correlated
8 THE1-int 27 **** 43.0 Highly correlated
9 MSTC-int 19 **** 74.0 Weakly correlated
10 MSTD-int 18 **** 74.0 Weakly correlated
11 MST-int 17 **** 74.0 Weakly correlated
12 L2a 14 n.s 99.0 Weakly correlated
13 L2b 14 n.s 99.0 Weakly correlated
14 MIRb 14 n.s 99.0 Weakly correlated
15 AluJo 12 n.s 74.0 Weakly correlated
16 AluJb 11 n.s 74.0 Weakly correlated
17 MSTA 10 n.s 43.0 Highly correlated
18 THE1B 10 n.s 43.0 Highly correlated
19 AluSx 9 n.s 74.0 Weakly correlated
20 AluSx1 8 n.s 74.0 Weakly correlated
21 MIR 7 n.s 99.0 Weakly correlated
22 AluJr 6 n.s 74.0 Weakly correlated
23 AluY 6 n.s 74.0 Weakly correlated
24 MIRc 6 n.s 99.0 Weakly correlated
25 MSTB2-int 6 **** 74.0 Weakly correlated
26 AluSz 5 n.s 74.0 Weakly correlated
27 L2 5 n.s 99.0 Weakly correlated
28 L2c 5 n.s 99.0 Weakly correlated
29 LTR18A 5 **** 43.0 Highly correlated
30 MLT1L 5 n.s 99.0 Weakly correlated
31 AluSp 4 n.s 74.0 Weakly correlated
32 AluSz6 4 n.s 74.0 Weakly correlated
33 L1MA2 4 n.s 74.0 Weakly correlated
34 L1MEg 4 n.s 99.0 Weakly correlated
35 MIR3 4 n.s 99.0 Weakly correlated
36 THE1A 4 * 43.0 Highly correlated
37 THE1C 4 n.s 43.0 Highly correlated
38 AluSc8 3 n.s 74.0 Weakly correlated
39 L1MB8 3 n.s 99.0 Weakly correlated
40 L1MC2 3 n.s 99.0 Weakly correlated
41 L1ME2 3 n.s 99.0 Weakly correlated
42 L1ME3 3 n.s 99.0 Weakly correlated
43 MLT1F2 3 n.s 99.0 Weakly correlated
44 MSTA1-int 3 **** 74.0 Weakly correlated
45 THE1D 3 n.s 43.0 Highly correlated
46 AluSc 2 n.s 74.0 Weakly correlated
47 AluSg 2 n.s 74.0 Weakly correlated
48 AluSg7 2 n.s 74.0 Weakly correlated
49 AluYj4 2 n.s 0.0 Weakly correlated
50 AluYm1 2 n.s 19.6 Weakly correlated
51 FLAM_A 2 n.s 74.0 Weakly correlated
52 FRAM 2 n.s 74.0 Weakly correlated
53 L1M5 2 n.s 99.0 Weakly correlated
54 L1MA4 2 n.s 87.0 Weakly correlated
55 L1MA5 2 n.s 87.0 Weakly correlated
56 L1MA9 2 n.s 99.0 Weakly correlated
57 L1MC4 2 n.s 99.0 Weakly correlated
58 L1ME1 2 n.s 99.0 Weakly correlated
59 L1ME4a 2 n.s 99.0 Weakly correlated
60 L1ME4b 2 n.s 99.0 Weakly correlated
61 L1MEc 2 n.s 99.0 Weakly correlated
62 L1MEd 2 n.s 99.0 Weakly correlated
63 L1PA16 2 n.s 74.0 Weakly correlated
64 L1PA2 2 n.s 15.2 Weakly correlated
65 L1PA4 2 n.s 19.6 Weakly correlated
66 L1PB1 2 n.s 74.0 Weakly correlated
67 L1PB4 2 n.s 99.0 Weakly correlated
68 LTR33 2 n.s 99.0 Weakly correlated
69 LTR76 2 *** 74.0 Weakly correlated
70 MER50-int 2 * 43.0 Highly correlated
71 MER52A 2 n.s 74.0 Weakly correlated
72 MLT-int 2 *** 99.0 Weakly correlated
73 MLT1A 2 n.s 99.0 Weakly correlated
74 MLT1B 2 n.s 99.0 Weakly correlated
75 MLT1D 2 n.s 99.0 Weakly correlated
76 MLT1K 2 n.s 99.0 Weakly correlated
77 MSTB 2 n.s 43.0 Highly correlated
78 MSTC 2 n.s 74.0 Weakly correlated
79 AluJr4 1 n.s 74.0 Weakly correlated
80 AluSq2 1 n.s 74.0 Weakly correlated
81 AluSx3 1 n.s 74.0 Weakly correlated
82 AluYc 1 n.s 74.0 Weakly correlated
83 AluYg6 1 * 15.2 Weakly correlated
84 AluYh3 1 n.s 15.2 Weakly correlated
85 CR1_Mam 1 n.s 99.0 Weakly correlated
86 ERVL-B4-int 1 n.s 99.0 Weakly correlated
87 FLAM_C 1 n.s 74.0 Weakly correlated
88 HAL1 1 n.s 99.0 Weakly correlated
89 HAL1b 1 n.s 99.0 Weakly correlated
90 HERV3-int 1 n.s 28.9 Weakly correlated
91 HERVL18-int 1 n.s 43.0 Highly correlated
92 HUERS-P3b-int 1 n.s 43.0 Highly correlated
93 L1M1 1 n.s 74.0 Weakly correlated
94 L1M2 1 n.s 99.0 Weakly correlated
95 L1M2a 1 n.s 87.0 Weakly correlated
96 L1M4 1 n.s 99.0 Weakly correlated
97 L1M4a2 1 n.s 99.0 Weakly correlated
98 L1M4b 1 n.s 99.0 Weakly correlated
99 L1M7 1 n.s 99.0 Weakly correlated
100 L1MA1 1 n.s 74.0 Weakly correlated
101 L1MA10 1 n.s 99.0 Weakly correlated
102 L1MA5A 1 n.s 87.0 Weakly correlated
103 L1MA6 1 n.s 87.0 Weakly correlated
104 L1MA7 1 n.s 87.0 Weakly correlated
105 L1MA8 1 n.s 87.0 Weakly correlated
106 L1MB7 1 n.s 99.0 Weakly correlated
107 L1MC5 1 n.s 99.0 Weakly correlated
108 L1MC5a 1 n.s 99.0 Weakly correlated
109 L1MCb 1 n.s 99.0 Weakly correlated
110 L1MD1 1 n.s 99.0 Weakly correlated
111 L1MD2 1 n.s 99.0 Weakly correlated
112 L1MDa 1 n.s 99.0 Weakly correlated
113 L1ME2z 1 n.s 99.0 Weakly correlated
114 L1ME3A 1 n.s 99.0 Weakly correlated
115 L1ME3Cz 1 n.s 99.0 Weakly correlated
116 L1ME3G 1 n.s 99.0 Weakly correlated
117 L1MEf 1 n.s 99.0 Weakly correlated
118 L1MEh 1 n.s 99.0 Weakly correlated
119 L1P3 1 n.s 74.0 Weakly correlated
120 L1P4 1 n.s 74.0 Weakly correlated
121 L1PA11 1 n.s 74.0 Weakly correlated
122 L1PA5 1 n.s 19.6 Weakly correlated
123 L1PA6 1 n.s 28.9 Weakly correlated
124 L1PREC2 1 n.s 43.0 Highly correlated
125 L3 1 n.s 99.0 Weakly correlated
126 L3b 1 n.s 99.0 Weakly correlated
127 L4_A_Mam 1 n.s 99.0 Weakly correlated
128 LTR12C 1 n.s 19.6 Weakly correlated
129 LTR12D 1 n.s 19.6 Weakly correlated
130 LTR12_ 1 n.s 28.9 Weakly correlated
131 LTR1A1 1 * 43.0 Highly correlated
132 LTR4 1 ** 28.9 Weakly correlated
133 LTR40b 1 n.s 99.0 Weakly correlated
134 LTR49 1 n.s 74.0 Weakly correlated
135 LTR54 1 n.s 74.0 Weakly correlated
136 LTR82A 1 n.s 99.0 Weakly correlated
137 LTR88a 1 * 99.0 Weakly correlated
138 MER11A 1 n.s 28.9 Weakly correlated
139 MER21B 1 n.s 99.0 Weakly correlated
140 MER39 1 n.s 74.0 Weakly correlated
141 MER4A 1 n.s 74.0 Weakly correlated
142 MER50 1 n.s 43.0 Highly correlated
143 MER51B 1 * 43.0 Highly correlated
144 MER61-int 1 n.s 43.0 Highly correlated
145 MER61C 1 ** 43.0 Highly correlated
146 MER92B 1 * 99.0 Weakly correlated
147 MLT1A1 1 n.s 87.0 Weakly correlated
148 MLT1C 1 n.s 94.0 Weakly correlated
149 MLT1D-int 1 n.s 99.0 Weakly correlated
150 MLT1F 1 n.s 99.0 Weakly correlated
151 MLT1N2 1 n.s 99.0 Weakly correlated
152 MLT2A1 1 n.s 74.0 Weakly correlated
153 MLT2A2 1 n.s 74.0 Weakly correlated
154 MamSINE1 1 n.s 99.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 THE1B-int 1145 **** 43.0 Highly correlated
2 MSTA-int 549 **** 43.0 Highly correlated
3 THE1C-int 506 **** 43.0 Highly correlated
4 THE1D-int 477 **** 28.9 Weakly correlated
5 THE1A-int 400 **** 43.0 Highly correlated
6 MSTB-int 139 **** 43.0 Highly correlated
7 MSTB1-int 27 **** 74.0 Weakly correlated
8 THE1-int 24 **** 43.0 Highly correlated
9 MSTC-int 19 **** 74.0 Weakly correlated
10 MST-int 17 **** 74.0 Weakly correlated
11 MSTD-int 16 **** 74.0 Weakly correlated
12 MSTB2-int 4 **** 74.0 Weakly correlated
13 MSTA1-int 3 **** 74.0 Weakly correlated
14 MLT-int 2 *** 99.0 Weakly correlated
15 MLT1D 1 n.s 99.0 Weakly correlated
16 L1MA5 1 n.s 87.0 Weakly correlated
17 MLT1D-int 1 n.s 99.0 Weakly correlated
18 MER52A 1 n.s 74.0 Weakly correlated
19 THE1B 1 n.s 43.0 Highly correlated
20 L1M1 1 n.s 74.0 Weakly correlated
21 MLT1A 1 n.s 99.0 Weakly correlated
22 LTR12_ 1 n.s 28.9 Weakly correlated
23 L1MEg 1 n.s 99.0 Weakly correlated
24 MSTA 1 n.s 43.0 Highly correlated
25 MLT1C 1 n.s 94.0 Weakly correlated
26 MLT1A1 1 n.s 87.0 Weakly correlated
27 LTR18A 1 ** 43.0 Highly correlated
28 THE1A 1 n.s 43.0 Highly correlated
29 MLT1B 1 n.s 99.0 Weakly correlated
30 L1MA5A 1 n.s 87.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP