ZRdb KZFP & Repeats
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Human_ZNF585B

  • Protein
    Zinc finger protein 585B
  • Length
    769
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    Q52M93
  • NCBI_ID
    92285
Sequence:
MPASWTSPQKSSALAPEDHGSSYEGSVSFRDVAIDFSREEWRHLDLSQRNLYRDVMLETYSHLLSVGYQVPKPEVVMLEQGKEPWALQGERPRHSCPGEKLWDHNQHRKIIGYKPASSQDQKIYSGEKSYECAEFGKSFTWKSQFKVHLKVPTGEKLYVCIECGRAFVQKPEFITHQKTHMREKPYKCNECGKSFFQVSSLFRHHRIHTGEKLYECSECGKGFPYNSDLSIHEKIHTGERHHECTDCGKAFTQKSTLKIHQKIHTGERSYICIECGQAFIQKTQLIAHRRIHSGEKPYECNNCGKSFISKSQLQVHQRVHTRVKPYICTEYGKVFSNNSNLITHEKIQSREKSSICTECGKAFTYRSELIIHQRIHTGEKPYECSDCGRAFTQKSALTVHQRIHTGEKSYICMKCGLAFIRKAHLITHQIIHTGEKPYKCGHCGKLFTSKSQLHVHKRIHTGEKPYVCNKCGKAFTNRSNLITHQKTHTGEKSYICSKCGKAFTQRSDLITHQRIHTGEKPYECNTCGKAFTQKSNLNIHQKIHTGERQYECHECGKAFNQKSILIVHQKIHTGEKPYVCTECGRAFIRKSNFITHQRIHTGEKPYECSDCGKSFTSKSQLLVHQPVHTGEKPYVCAECGKAFSGRSNLSKHQKTHTGEKPYICSECGKTFRQKSELITHHRIHTGEKPYECSDCGKSFTKKSQLQVHQRIHTGEKPYVCAECGKAFSNRSNLNKHQTTHTGDKPYKCGICGKGFVQKSVFSVHQSSHA
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 27..97
2 C2h2 158..180
3 C2h2 186..208
4 C2h2 214..236
5 C2h2 242..264
6 C2h2 270..292
7 C2h2 298..320
8 C2h2 354..376
9 C2h2 382..404
10 C2h2 410..432
11 C2h2 438..460
12 C2h2 466..488
13 C2h2 494..516
14 C2h2 522..544
15 C2h2 550..572
16 C2h2 578..600
17 C2h2 606..628
18 C2h2 634..656
19 C2h2 662..684
20 C2h2 690..712
21 C2h2 718..740
22 C2h2 746..768
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription activator activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 THE1B-int 2349 **** 43.0 Weakly correlated
2 MSTA-int 1121 **** 43.0 Weakly correlated
3 THE1C-int 994 **** 43.0 Weakly correlated
4 THE1D-int 993 **** 28.9 Weakly correlated
5 THE1A-int 838 **** 43.0 Weakly correlated
6 MSTB-int 296 **** 43.0 Weakly correlated
7 AluSx1 225 n.s 74.0 Weakly correlated
8 AluSx 223 * 74.0 Weakly correlated
9 AluJb 216 * 74.0 Weakly correlated
10 MIRb 211 n.s 99.0 Highly correlated
11 L2a 185 n.s 99.0 Highly correlated
12 AluY 171 n.s 74.0 Weakly correlated
13 L2b 147 **** 99.0 Highly correlated
14 AluSz 146 n.s 74.0 Weakly correlated
15 L2c 132 n.s 99.0 Highly correlated
16 AluJo 120 n.s 74.0 Weakly correlated
17 MIR 118 n.s 99.0 Highly correlated
18 AluJr 76 n.s 74.0 Weakly correlated
19 L2 75 n.s 99.0 Highly correlated
20 MIRc 72 n.s 99.0 Highly correlated
21 AluSp 71 n.s 74.0 Weakly correlated
22 AluSz6 70 n.s 74.0 Weakly correlated
23 AluSg 64 n.s 74.0 Weakly correlated
24 MSTB1-int 60 **** 74.0 Weakly correlated
25 MIR3 56 n.s 99.0 Highly correlated
26 AluSx3 53 n.s 74.0 Weakly correlated
27 AluSq2 52 n.s 74.0 Weakly correlated
28 THE1-int 51 **** 43.0 Weakly correlated
29 MSTC-int 47 **** 74.0 Weakly correlated
30 THE1B 47 n.s 43.0 Weakly correlated
31 MSTD-int 43 **** 74.0 Weakly correlated
32 L1MC4 41 n.s 99.0 Highly correlated
33 AluSc8 40 n.s 74.0 Weakly correlated
34 L1MEd 40 n.s 99.0 Highly correlated
35 MST-int 39 **** 74.0 Weakly correlated
36 AluSc 38 n.s 74.0 Weakly correlated
37 LTR18A 36 **** 43.0 Weakly correlated
38 L3 32 n.s 99.0 Highly correlated
39 L1M5 29 n.s 99.0 Highly correlated
40 L1MEc 28 n.s 99.0 Highly correlated
41 MSTA 28 n.s 43.0 Weakly correlated
42 LTR8 27 **** 43.0 Weakly correlated
43 L1M4 26 n.s 99.0 Highly correlated
44 L1ME1 25 n.s 99.0 Highly correlated
45 AluJr4 24 n.s 74.0 Weakly correlated
46 L1MEg 23 n.s 99.0 Highly correlated
47 AluSx4 22 n.s 74.0 Weakly correlated
48 L1PA2 22 n.s 15.2 Weakly correlated
49 FLAM_C 21 n.s 74.0 Weakly correlated
50 HAL1 21 n.s 99.0 Highly correlated
51 L1M2 21 n.s 99.0 Highly correlated
52 L1ME2 21 n.s 99.0 Highly correlated
53 L1ME4b 21 n.s 99.0 Highly correlated
54 AluSq 19 n.s 74.0 Weakly correlated
55 L1MB3 19 n.s 99.0 Highly correlated
56 L1PA3 19 n.s 19.6 Weakly correlated
57 AluSg7 18 n.s 74.0 Weakly correlated
58 L1PB1 18 n.s 74.0 Weakly correlated
59 MLT1L 18 n.s 99.0 Highly correlated
60 THE1C 18 n.s 43.0 Weakly correlated
61 MLT1B 17 n.s 99.0 Highly correlated
62 MLT1K 17 n.s 99.0 Highly correlated
63 AluYj4 16 **** 0.0 Weakly correlated
64 L1ME4a 16 n.s 99.0 Highly correlated
65 L1PA4 16 n.s 19.6 Weakly correlated
66 MLT1D 16 n.s 99.0 Highly correlated
67 L1MA9 15 n.s 99.0 Highly correlated
68 MER4-int 15 n.s 74.0 Weakly correlated
69 HERVL18-int 14 **** 43.0 Weakly correlated
70 L1M1 14 n.s 74.0 Weakly correlated
71 L1MB7 14 n.s 99.0 Highly correlated
72 L1MC5a 14 n.s 99.0 Highly correlated
73 MSTB2-int 14 **** 74.0 Weakly correlated
74 L1MB8 13 n.s 99.0 Highly correlated
75 L1MC3 13 n.s 99.0 Highly correlated
76 L1MEf 13 n.s 99.0 Highly correlated
77 MLT1A 13 n.s 99.0 Highly correlated
78 PRIMA4-int 13 **** 74.0 Weakly correlated
79 HERVIP10FH-int 12 **** 28.9 Weakly correlated
80 MIR1_Amn 12 * 319.0 Weakly correlated
81 MLT1F2 12 n.s 99.0 Highly correlated
82 THE1D 12 n.s 43.0 Weakly correlated
83 L1M4b 11 n.s 99.0 Highly correlated
84 L1MC2 11 n.s 99.0 Highly correlated
85 L1MD2 11 n.s 99.0 Highly correlated
86 LTR10F 11 **** 28.9 Weakly correlated
87 FRAM 10 n.s 74.0 Weakly correlated
88 HERVH-int 10 n.s 28.9 Weakly correlated
89 L1MA7 10 n.s 87.0 Weakly correlated
90 L1ME3Cz 10 n.s 99.0 Highly correlated
91 L1MEi 10 n.s 99.0 Highly correlated
92 THE1A 10 n.s 43.0 Weakly correlated
93 AluYc 9 n.s 74.0 Weakly correlated
94 AluYm1 9 n.s 19.6 Weakly correlated
95 HAL1b 9 n.s 99.0 Highly correlated
96 L1MA4 9 n.s 87.0 Weakly correlated
97 L1MB5 9 n.s 99.0 Highly correlated
98 L1MD 9 n.s 99.0 Highly correlated
99 L1P4 9 n.s 74.0 Weakly correlated
100 L1PA16 9 n.s 74.0 Weakly correlated
101 L1PA5 9 n.s 19.6 Weakly correlated
102 L1PA6 9 n.s 28.9 Weakly correlated
103 LTR10A 9 **** 28.9 Weakly correlated
104 MLT1F 9 n.s 99.0 Highly correlated
105 AluSc5 8 n.s 74.0 Weakly correlated
106 FLAM_A 8 n.s 74.0 Weakly correlated
107 L1MA2 8 n.s 74.0 Weakly correlated
108 L1MA6 8 n.s 87.0 Weakly correlated
109 LTR12C 8 n.s 19.6 Weakly correlated
110 LTR13 8 ** 19.6 Weakly correlated
111 LTR33 8 n.s 99.0 Highly correlated
112 MER52D 8 * 74.0 Weakly correlated
113 MLT1A0 8 n.s 99.0 Highly correlated
114 MLT1I 8 n.s 99.0 Highly correlated
115 MLT2B3 8 n.s 99.0 Highly correlated
116 AluYh3 7 * 15.2 Weakly correlated
117 L1ME3 7 n.s 99.0 Highly correlated
118 L1ME3G 7 n.s 99.0 Highly correlated
119 L1PA7 7 n.s 74.0 Weakly correlated
120 L1PREC2 7 n.s 43.0 Weakly correlated
121 L3b 7 n.s 99.0 Highly correlated
122 LTR88a 7 **** 99.0 Highly correlated
123 MER50 7 n.s 43.0 Weakly correlated
124 MLT1J 7 n.s 99.0 Highly correlated
125 MLT1N2 7 n.s 99.0 Highly correlated
126 L1HS 6 n.s 8.6 Weakly correlated
127 L1M3 6 n.s 99.0 Highly correlated
128 L1M4c 6 n.s 99.0 Highly correlated
129 L1M7 6 n.s 99.0 Highly correlated
130 L1MA3 6 n.s 74.0 Weakly correlated
131 L1MA4A 6 n.s 87.0 Weakly correlated
132 L1MA5 6 n.s 87.0 Weakly correlated
133 L1MC 6 n.s 99.0 Highly correlated
134 L1MCa 6 n.s 99.0 Highly correlated
135 L1MD1 6 n.s 99.0 Highly correlated
136 L1MDa 6 n.s 99.0 Highly correlated
137 L1ME2z 6 n.s 99.0 Highly correlated
138 L1ME3A 6 n.s 99.0 Highly correlated
139 L1PA15 6 n.s 74.0 Weakly correlated
140 L1PB 6 n.s 74.0 Weakly correlated
141 LTR1A1 6 *** 43.0 Weakly correlated
142 LTR41B 6 *** 99.0 Highly correlated
143 LTR7C 6 **** 28.9 Weakly correlated
144 MER52A 6 n.s 74.0 Weakly correlated
145 MER66B 6 * 43.0 Weakly correlated
146 MLT-int 6 **** 99.0 Highly correlated
147 MLT2B4 6 n.s 99.0 Highly correlated
148 MSTA1-int 6 **** 74.0 Weakly correlated
149 MSTC 6 n.s 74.0 Weakly correlated
150 MamRTE1 6 n.s 99.0 Highly correlated
151 Alu 5 ** 74.0 Weakly correlated
152 HERVL40-int 5 n.s 99.0 Highly correlated
153 L1M2a 5 n.s 87.0 Weakly correlated
154 L1MC1 5 n.s 99.0 Highly correlated
155 L1MC5 5 n.s 99.0 Highly correlated
156 L1MCc 5 n.s 99.0 Highly correlated
157 L1ME3B 5 n.s 99.0 Highly correlated
158 L1PA8 5 n.s 74.0 Weakly correlated
159 L2-3_Crp 5 * 431.0 Weakly correlated
160 L4_B_Mam 5 n.s 99.0 Highly correlated
161 LTR16A 5 n.s 99.0 Highly correlated
162 LTR16C 5 n.s 99.0 Highly correlated
163 MER41A 5 n.s 74.0 Weakly correlated
164 MLT1H 5 n.s 99.0 Highly correlated
165 MSTB 5 n.s 43.0 Weakly correlated
166 MSTD 5 n.s 74.0 Weakly correlated
167 AluSg4 4 n.s 74.0 Weakly correlated
168 AluYa5 4 n.s 15.2 Weakly correlated
169 AluYh3a3 4 **** 15.2 Weakly correlated
170 AmnSINE1 4 * 319.0 Weakly correlated
171 HAL1M8 4 n.s 99.0 Highly correlated
172 HERV17-int 4 n.s 28.9 Weakly correlated
173 HERVH48-int 4 ** 28.9 Weakly correlated
174 L1M4a1 4 n.s 99.0 Highly correlated
175 L1MA1 4 n.s 74.0 Weakly correlated
176 L1MB2 4 n.s 99.0 Highly correlated
177 L1P1 4 n.s 19.6 Weakly correlated
178 L1P3 4 n.s 74.0 Weakly correlated
179 LTR13_ 4 **** 28.9 Weakly correlated
180 LTR26 4 * 74.0 Weakly correlated
181 LTR40a 4 n.s 99.0 Highly correlated
182 LTR67B 4 n.s 99.0 Highly correlated
183 LTR76 4 *** 74.0 Weakly correlated
184 LTR78 4 n.s 99.0 Highly correlated
185 MER11A 4 n.s 28.9 Weakly correlated
186 MER21B 4 n.s 99.0 Highly correlated
187 MER83B 4 **** 43.0 Weakly correlated
188 MER90 4 * 99.0 Highly correlated
189 MLT1C 4 n.s 94.0 Weakly correlated
190 MLT1F1 4 n.s 99.0 Highly correlated
191 MLT1G 4 n.s 99.0 Highly correlated
192 MLT1M 4 n.s 99.0 Highly correlated
193 MLT2A2 4 n.s 74.0 Weakly correlated
194 MSTA1 4 ** 74.0 Weakly correlated
195 MamGypLTR1d 4 ** 99.0 Highly correlated
196 AluYb8 3 n.s 15.2 Weakly correlated
197 AluYg6 3 * 15.2 Weakly correlated
198 ERV3-16A3_I-int 3 n.s 99.0 Highly correlated
199 ERVL-B4-int 3 n.s 99.0 Highly correlated
200 ERVL-E-int 3 n.s 99.0 Highly correlated
201 FAM 3 n.s 87.0 Weakly correlated
202 HUERS-P3b-int 3 n.s 43.0 Weakly correlated
203 L1M3c 3 n.s 99.0 Highly correlated
204 L1M3f 3 n.s 87.0 Weakly correlated
205 L1M6 3 n.s 99.0 Highly correlated
206 L1MA10 3 n.s 99.0 Highly correlated
207 L1MA8 3 n.s 87.0 Weakly correlated
208 L1ME3C 3 n.s 99.0 Highly correlated
209 L1ME3D 3 n.s 99.0 Highly correlated
210 L1ME5 3 n.s 99.0 Highly correlated
211 L1PA14 3 n.s 74.0 Weakly correlated
212 LOR1a 3 n.s 74.0 Weakly correlated
213 LTR19A 3 * 43.0 Weakly correlated
214 LTR1B 3 * 43.0 Weakly correlated
215 LTR4 3 *** 28.9 Weakly correlated
216 LTR8A 3 n.s 43.0 Weakly correlated
217 LTR8B 3 n.s 43.0 Weakly correlated
218 MER101-int 3 n.s 74.0 Weakly correlated
219 MER21C 3 n.s 99.0 Highly correlated
220 MER39 3 n.s 74.0 Weakly correlated
221 MER4A 3 n.s 74.0 Weakly correlated
222 MER74C 3 *** 99.0 Highly correlated
223 MLT1A1 3 n.s 87.0 Weakly correlated
224 MLT1E1 3 n.s 99.0 Highly correlated
225 MLT1J1 3 n.s 99.0 Highly correlated
226 MamSINE1 3 n.s 99.0 Highly correlated
227 Plat_L3 3 n.s 99.0 Highly correlated
228 AluYe5 2 n.s 74.0 Weakly correlated
229 AluYk2 2 n.s 19.6 Weakly correlated
230 CR1_Mam 2 n.s 99.0 Highly correlated
231 ERV3-16A3_LTR 2 n.s 99.0 Highly correlated
232 HAL1ME 2 n.s 99.0 Highly correlated
233 HERV16-int 2 n.s 99.0 Highly correlated
234 HERVIP10F-int 2 n.s 28.9 Weakly correlated
235 HERVK13-int 2 * 19.6 Weakly correlated
236 Harlequin-int 2 n.s 74.0 Weakly correlated
237 L1M3de 2 n.s 99.0 Highly correlated
238 L1M8 2 n.s 99.0 Highly correlated
239 L1MA5A 2 n.s 87.0 Weakly correlated
240 L1MC4a 2 n.s 99.0 Highly correlated
241 L1MDb 2 n.s 99.0 Highly correlated
242 L1ME3F 2 n.s 99.0 Highly correlated
243 L1ME4c 2 n.s 99.0 Highly correlated
244 L1MEb 2 n.s 99.0 Highly correlated
245 L1MEg2 2 n.s 99.0 Highly correlated
246 L1MEh 2 n.s 99.0 Highly correlated
247 L1PA10 2 n.s 74.0 Weakly correlated
248 L1PA11 2 n.s 74.0 Weakly correlated
249 L1PA13 2 n.s 74.0 Weakly correlated
250 L1PA8A 2 n.s 74.0 Weakly correlated
251 L1PB4 2 n.s 99.0 Highly correlated
252 L1PBa 2 n.s 74.0 Weakly correlated
253 L4_A_Mam 2 n.s 99.0 Highly correlated
254 L5 2 n.s 99.0 Highly correlated
255 LTR10C 2 n.s 28.9 Weakly correlated
256 LTR12D 2 n.s 19.6 Weakly correlated
257 LTR12_ 2 n.s 28.9 Weakly correlated
258 LTR14B 2 n.s 28.9 Weakly correlated
259 LTR16A1 2 n.s 99.0 Highly correlated
260 LTR16B2 2 n.s 99.0 Highly correlated
261 LTR16E1 2 n.s 99.0 Highly correlated
262 LTR17 2 n.s 28.9 Weakly correlated
263 LTR1A2 2 n.s 43.0 Weakly correlated
264 LTR1F1 2 * 43.0 Weakly correlated
265 LTR24B 2 * 74.0 Weakly correlated
266 LTR33A 2 n.s 99.0 Highly correlated
267 LTR35A 2 *** 43.0 Weakly correlated
268 LTR39 2 n.s 43.0 Weakly correlated
269 LTR40b 2 n.s 99.0 Highly correlated
270 LTR41 2 n.s 99.0 Highly correlated
271 LTR49 2 n.s 74.0 Weakly correlated
272 LTR50 2 n.s 99.0 Highly correlated
273 LTR54 2 n.s 74.0 Weakly correlated
274 LTR6A 2 n.s 28.9 Weakly correlated
275 LTR81B 2 n.s 99.0 Highly correlated
276 LTR82A 2 n.s 99.0 Highly correlated
277 MER11C 2 n.s 19.6 Weakly correlated
278 MER39B 2 n.s 74.0 Weakly correlated
279 MER41B 2 n.s 74.0 Weakly correlated
280 MER41D 2 n.s 74.0 Weakly correlated
281 MER48 2 ** 28.9 Weakly correlated
282 MER4A1 2 n.s 74.0 Weakly correlated
283 MER50-int 2 n.s 43.0 Weakly correlated
284 MER51B 2 n.s 43.0 Weakly correlated
285 MER52-int 2 n.s 99.0 Highly correlated
286 MER61-int 2 n.s 43.0 Weakly correlated
287 MER61C 2 * 43.0 Weakly correlated
288 MER67C 2 n.s 99.0 Highly correlated
289 MER83C 2 ** 43.0 Weakly correlated
290 MER92B 2 n.s 99.0 Highly correlated
291 MLT1A0-int 2 n.s 99.0 Highly correlated
292 MLT1B-int 2 n.s 99.0 Highly correlated
293 MLT1D-int 2 n.s 99.0 Highly correlated
294 MLT1G1 2 n.s 99.0 Highly correlated
295 MLT1J2 2 n.s 99.0 Highly correlated
296 MLT2A1 2 n.s 74.0 Weakly correlated
297 MLT2C1 2 n.s 99.0 Highly correlated
298 MLT2D 2 n.s 99.0 Highly correlated
299 MLT2F 2 n.s 99.0 Highly correlated
300 MSTB1 2 n.s 74.0 Weakly correlated
301 MSTB2 2 n.s 74.0 Weakly correlated
302 MamGypLTR2b 2 n.s 99.0 Highly correlated
303 SVA_F 2 n.s 0.0 Weakly correlated
304 X7A_LINE 2 * 319.0 Weakly correlated
305 X7C_LINE 2 ** 319.0 Weakly correlated
306 AluSq10 1 n.s 74.0 Weakly correlated
307 AluYc3 1 n.s 74.0 Weakly correlated
308 AluYd8 1 * 15.2 Weakly correlated
309 AluYh9 1 ** 15.2 Weakly correlated
310 AluYk4 1 n.s 15.2 Weakly correlated
311 CR1-3_Croc 1 n.s 319.0 Weakly correlated
312 CR1-L3A_Croc 1 * 319.0 Weakly correlated
313 ERV24_Prim-int 1 n.s 74.0 Weakly correlated
314 HERV3-int 1 n.s 28.9 Weakly correlated
315 HERV35I-int 1 n.s 43.0 Weakly correlated
316 HERVE-int 1 n.s 19.6 Weakly correlated
317 HERVK-int 1 n.s 28.9 Weakly correlated
318 HUERS-P2-int 1 n.s 43.0 Weakly correlated
319 L1M2c 1 n.s 87.0 Weakly correlated
320 L1M3b 1 n.s 99.0 Highly correlated
321 L1M4a2 1 n.s 99.0 Highly correlated
322 L1MB1 1 n.s 99.0 Highly correlated
323 L1MB4 1 n.s 99.0 Highly correlated
324 L1MCb 1 n.s 99.0 Highly correlated
325 L1MD3 1 n.s 99.0 Highly correlated
326 L1ME3E 1 n.s 99.0 Highly correlated
327 L1P4a 1 n.s 74.0 Weakly correlated
328 L1PA12 1 n.s 74.0 Weakly correlated
329 L1PA15-16 1 n.s 74.0 Weakly correlated
330 L1PA17 1 n.s 74.0 Weakly correlated
331 L1PB2 1 n.s 74.0 Weakly correlated
332 L2-1_AMi 1 n.s 319.0 Weakly correlated
333 L4_C_Mam 1 n.s 99.0 Highly correlated
334 LTR10E 1 n.s 28.9 Weakly correlated
335 LTR12 1 n.s 28.9 Weakly correlated
336 LTR16 1 n.s 99.0 Highly correlated
337 LTR16A2 1 n.s 99.0 Highly correlated
338 LTR1B1 1 n.s 43.0 Weakly correlated
339 LTR1F 1 n.s 43.0 Weakly correlated
340 LTR2 1 n.s 28.9 Weakly correlated
341 LTR25 1 n.s 43.0 Weakly correlated
342 LTR25-int 1 n.s 43.0 Weakly correlated
343 LTR27E 1 n.s 43.0 Weakly correlated
344 LTR37-int 1 n.s 99.0 Highly correlated
345 LTR3B_ 1 n.s 28.9 Weakly correlated
346 LTR41C 1 n.s 99.0 Highly correlated
347 LTR42 1 n.s 74.0 Weakly correlated
348 LTR46 1 n.s 43.0 Weakly correlated
349 LTR47A 1 n.s 74.0 Weakly correlated
350 LTR51 1 n.s 74.0 Weakly correlated
351 LTR53 1 n.s 99.0 Highly correlated
352 LTR57-int 1 n.s 74.0 Weakly correlated
353 LTR60B 1 n.s 74.0 Weakly correlated
354 LTR61 1 n.s 43.0 Weakly correlated
355 LTR73 1 n.s 99.0 Highly correlated
356 LTR75_1 1 * 99.0 Highly correlated
357 LTR81A 1 n.s 99.0 Highly correlated
358 LTR83 1 n.s 99.0 Highly correlated
359 LTR85b 1 n.s 99.0 Highly correlated
360 LTR85c 1 n.s 99.0 Highly correlated
361 LTR88b 1 n.s 99.0 Highly correlated
362 LTR88c 1 n.s 99.0 Highly correlated
363 LTR89 1 n.s 99.0 Highly correlated
364 LTR9B 1 n.s 43.0 Weakly correlated
365 MER11B 1 n.s 19.6 Weakly correlated
366 MER21A 1 n.s 74.0 Weakly correlated
367 MER31A 1 n.s 87.0 Weakly correlated
368 MER34A 1 n.s 99.0 Highly correlated
369 MER41G 1 * 74.0 Weakly correlated
370 MER49 1 n.s 43.0 Weakly correlated
371 MER4B-int 1 n.s 99.0 Highly correlated
372 MER4C 1 n.s 74.0 Weakly correlated
373 MER4CL34 1 n.s 43.0 Weakly correlated
374 MER4E 1 n.s 74.0 Weakly correlated
375 MER50B 1 n.s 43.0 Weakly correlated
376 MER51A 1 n.s 43.0 Weakly correlated
377 MER57B2 1 n.s 43.0 Weakly correlated
378 MER70B 1 n.s 87.0 Weakly correlated
379 MER74A 1 n.s 99.0 Highly correlated
380 MER83 1 n.s 43.0 Weakly correlated
381 MER87B 1 n.s 74.0 Weakly correlated
382 MLT1E 1 n.s 99.0 Highly correlated
383 MLT1E3 1 n.s 99.0 Highly correlated
384 MLT1G1-int 1 n.s 99.0 Highly correlated
385 MLT1G3 1 n.s 99.0 Highly correlated
386 MLT1O 1 n.s 99.0 Highly correlated
387 MLT2B2 1 n.s 99.0 Highly correlated
388 MamGypLTR3 1 n.s 99.0 Highly correlated
389 MamGypsy2-LTR 1 n.s 99.0 Highly correlated
390 SVA_D 1 n.s 15.2 Weakly correlated
391 SVA_E 1 n.s 0.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 THE1B-int 1244 **** 43.0 Weakly correlated
2 MSTA-int 588 **** 43.0 Weakly correlated
3 THE1C-int 522 **** 43.0 Weakly correlated
4 THE1D-int 519 **** 28.9 Weakly correlated
5 THE1A-int 442 **** 43.0 Weakly correlated
6 MSTB-int 154 **** 43.0 Weakly correlated
7 MSTB1-int 30 **** 74.0 Weakly correlated
8 THE1-int 24 **** 43.0 Weakly correlated
9 MIR 24 n.s 99.0 Highly correlated
10 MSTC-int 23 **** 74.0 Weakly correlated
11 MSTD-int 23 **** 74.0 Weakly correlated
12 MIRb 22 n.s 99.0 Highly correlated
13 MST-int 21 **** 74.0 Weakly correlated
14 AluJb 21 n.s 74.0 Weakly correlated
15 L2a 20 n.s 99.0 Highly correlated
16 L2c 15 n.s 99.0 Highly correlated
17 AluSx 12 n.s 74.0 Weakly correlated
18 AluJo 11 n.s 74.0 Weakly correlated
19 L2b 10 n.s 99.0 Highly correlated
20 MSTB2-int 9 **** 74.0 Weakly correlated
21 L2 9 n.s 99.0 Highly correlated
22 L1M5 8 n.s 99.0 Highly correlated
23 L1MEd 8 n.s 99.0 Highly correlated
24 AluSx1 8 n.s 74.0 Weakly correlated
25 AluSz 8 n.s 74.0 Weakly correlated
26 AluY 7 n.s 74.0 Weakly correlated
27 MIRc 7 n.s 99.0 Highly correlated
28 L1ME4b 7 n.s 99.0 Highly correlated
29 AluJr 7 n.s 74.0 Weakly correlated
30 L1ME2 6 n.s 99.0 Highly correlated
31 L1MC2 6 n.s 99.0 Highly correlated
32 L1MEc 6 n.s 99.0 Highly correlated
33 L1MB3 6 n.s 99.0 Highly correlated
34 THE1B 5 n.s 43.0 Weakly correlated
35 L1MA9 4 n.s 99.0 Highly correlated
36 LTR10F 4 ** 28.9 Weakly correlated
37 AluSz6 4 n.s 74.0 Weakly correlated
38 L1MEi 4 n.s 99.0 Highly correlated
39 L1MEg 4 n.s 99.0 Highly correlated
40 HAL1 4 n.s 99.0 Highly correlated
41 L1MA6 4 n.s 87.0 Weakly correlated
42 MLT1A 3 n.s 99.0 Highly correlated
43 MLT1I 3 n.s 99.0 Highly correlated
44 L1PB1 3 n.s 74.0 Weakly correlated
45 L1MB7 3 n.s 99.0 Highly correlated
46 AluSx3 3 n.s 74.0 Weakly correlated
47 HAL1b 3 n.s 99.0 Highly correlated
48 L1MB8 3 n.s 99.0 Highly correlated
49 L3 3 n.s 99.0 Highly correlated
50 MSTA1-int 3 **** 74.0 Weakly correlated
51 FLAM_A 3 n.s 74.0 Weakly correlated
52 L1ME1 3 n.s 99.0 Highly correlated
53 MLT-int 3 ** 99.0 Highly correlated
54 MLT1D 3 n.s 99.0 Highly correlated
55 FRAM 2 n.s 74.0 Weakly correlated
56 HERVH48-int 2 n.s 28.9 Weakly correlated
57 L1M4b 2 n.s 99.0 Highly correlated
58 L1M6 2 n.s 99.0 Highly correlated
59 L1MA4A 2 n.s 87.0 Weakly correlated
60 AluSp 2 n.s 74.0 Weakly correlated
61 L1MA2 2 n.s 74.0 Weakly correlated
62 L1MA7 2 n.s 87.0 Weakly correlated
63 L1ME4a 2 n.s 99.0 Highly correlated
64 L1MEf 2 n.s 99.0 Highly correlated
65 L1PA6 2 n.s 28.9 Weakly correlated
66 MamRTE1 2 n.s 99.0 Highly correlated
67 L1M2 2 n.s 99.0 Highly correlated
68 L1MC5a 2 n.s 99.0 Highly correlated
69 L1PA4 2 n.s 19.6 Weakly correlated
70 LTR16C 2 n.s 99.0 Highly correlated
71 MER39 2 n.s 74.0 Weakly correlated
72 MLT2B4 2 n.s 99.0 Highly correlated
73 MSTA 2 n.s 43.0 Weakly correlated
74 L1MA5 2 n.s 87.0 Weakly correlated
75 L1MCa 2 n.s 99.0 Highly correlated
76 LTR1A1 2 n.s 43.0 Weakly correlated
77 L1ME3A 2 n.s 99.0 Highly correlated
78 MIR3 2 n.s 99.0 Highly correlated
79 MLT1B 2 n.s 99.0 Highly correlated
80 L1M3 2 n.s 99.0 Highly correlated
81 L1MC3 2 n.s 99.0 Highly correlated
82 L1ME3Cz 2 n.s 99.0 Highly correlated
83 L1MB5 2 n.s 99.0 Highly correlated
84 L1MC4 2 n.s 99.0 Highly correlated
85 LTR13_ 2 ** 28.9 Weakly correlated
86 MLT1L 2 n.s 99.0 Highly correlated
87 L1MA4 2 n.s 87.0 Weakly correlated
88 L1PA2 2 n.s 15.2 Weakly correlated
89 L2-3_Crp 2 n.s 431.0 Weakly correlated
90 LTR33 2 n.s 99.0 Highly correlated
91 L1M8 1 n.s 99.0 Highly correlated
92 L1MC4a 1 n.s 99.0 Highly correlated
93 L1ME2z 1 n.s 99.0 Highly correlated
94 L1ME3G 1 n.s 99.0 Highly correlated
95 L1ME4c 1 n.s 99.0 Highly correlated
96 L1PA15 1 n.s 74.0 Weakly correlated
97 L5 1 n.s 99.0 Highly correlated
98 LTR1B1 1 n.s 43.0 Weakly correlated
99 LTR42 1 n.s 74.0 Weakly correlated
100 LTR8 1 n.s 43.0 Weakly correlated
101 MER11B 1 n.s 19.6 Weakly correlated
102 MLT1F1 1 n.s 99.0 Highly correlated
103 MLT1M 1 n.s 99.0 Highly correlated
104 THE1C 1 n.s 43.0 Weakly correlated
105 FLAM_C 1 n.s 74.0 Weakly correlated
106 HERV35I-int 1 n.s 43.0 Weakly correlated
107 L1M7 1 n.s 99.0 Highly correlated
108 L1ME3 1 n.s 99.0 Highly correlated
109 L1P1 1 n.s 19.6 Weakly correlated
110 L1PA16 1 n.s 74.0 Weakly correlated
111 L1PA7 1 n.s 74.0 Weakly correlated
112 LTR13 1 n.s 19.6 Weakly correlated
113 LTR78 1 n.s 99.0 Highly correlated
114 MER21C 1 n.s 99.0 Highly correlated
115 MER31A 1 n.s 87.0 Weakly correlated
116 MER52A 1 n.s 74.0 Weakly correlated
117 MER87B 1 n.s 74.0 Weakly correlated
118 MLT1A0-int 1 n.s 99.0 Highly correlated
119 MLT1F 1 n.s 99.0 Highly correlated
120 HERV16-int 1 n.s 99.0 Highly correlated
121 L1M4a1 1 n.s 99.0 Highly correlated
122 L1MD 1 n.s 99.0 Highly correlated
123 L1MD2 1 n.s 99.0 Highly correlated
124 L1P4 1 n.s 74.0 Weakly correlated
125 L1PA15-16 1 n.s 74.0 Weakly correlated
126 L2-1_AMi 1 n.s 319.0 Weakly correlated
127 L4_A_Mam 1 n.s 99.0 Highly correlated
128 LTR8A 1 n.s 43.0 Weakly correlated
129 MER67C 1 n.s 99.0 Highly correlated
130 MIR1_Amn 1 n.s 319.0 Weakly correlated
131 AluJr4 1 n.s 74.0 Weakly correlated
132 AluSq2 1 n.s 74.0 Weakly correlated
133 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
134 L1M2a 1 n.s 87.0 Weakly correlated
135 L1MA8 1 n.s 87.0 Weakly correlated
136 L1MC1 1 n.s 99.0 Highly correlated
137 L1MC5 1 n.s 99.0 Highly correlated
138 L1MCb 1 n.s 99.0 Highly correlated
139 LTR12 1 n.s 28.9 Weakly correlated
140 MER4C 1 n.s 74.0 Weakly correlated
141 MER90 1 n.s 99.0 Highly correlated
142 ERVL-E-int 1 n.s 99.0 Highly correlated
143 L1MA5A 1 n.s 87.0 Weakly correlated
144 L1ME3B 1 n.s 99.0 Highly correlated
145 LTR18A 1 * 43.0 Weakly correlated
146 LTR1F 1 n.s 43.0 Weakly correlated
147 LTR24B 1 n.s 74.0 Weakly correlated
148 LTR40a 1 n.s 99.0 Highly correlated
149 MER83C 1 * 43.0 Weakly correlated
150 MLT1G 1 n.s 99.0 Highly correlated
151 MLT1K 1 n.s 99.0 Highly correlated
152 MSTD 1 n.s 74.0 Weakly correlated
153 MamGypLTR1d 1 n.s 99.0 Highly correlated
154 THE1A 1 n.s 43.0 Weakly correlated
155 AluSc 1 n.s 74.0 Weakly correlated
156 L1MCc 1 n.s 99.0 Highly correlated
157 L1MD1 1 n.s 99.0 Highly correlated
158 L1MEh 1 n.s 99.0 Highly correlated
159 L1PA5 1 n.s 19.6 Weakly correlated
160 L1PA8A 1 n.s 74.0 Weakly correlated
161 LTR81B 1 n.s 99.0 Highly correlated
162 LTR85b 1 n.s 99.0 Highly correlated
163 MLT1D-int 1 n.s 99.0 Highly correlated
164 AluYc 1 n.s 74.0 Weakly correlated
165 L1MB2 1 n.s 99.0 Highly correlated
166 L1MB4 1 n.s 99.0 Highly correlated
167 L1PB4 1 n.s 99.0 Highly correlated
168 LTR19A 1 n.s 43.0 Weakly correlated
169 LTR41C 1 n.s 99.0 Highly correlated
170 MLT1A0 1 n.s 99.0 Highly correlated
171 MLT1O 1 n.s 99.0 Highly correlated
172 MSTC 1 n.s 74.0 Weakly correlated
173 SVA_E 1 n.s 0.0 Weakly correlated
174 AluYj4 1 n.s 0.0 Weakly correlated
175 HUERS-P2-int 1 n.s 43.0 Weakly correlated
176 MER70B 1 n.s 87.0 Weakly correlated
177 MLT1F2 1 n.s 99.0 Highly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 L1MC2 99.0 Highly correlated
2 L1ME2 99.0 Highly correlated
3 MIR 99.0 Highly correlated
4 MIRB 99.0 Highly correlated
5 MIRC 99.0 Highly correlated
6 MST-INT 74.0 Weakly correlated
7 THE1-INT 43.0 Weakly correlated
8 THE1D-INT 28.9 Weakly correlated