ZRdb KZFP & Repeats
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Human_ZNF584

  • Protein
    Zinc finger protein 584
  • Length
    421
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    Q8IVC4
  • NCBI_ID
    201514
Sequence:
MAGEAEAQLDPSLQGLVMFEDVTVYFSREEWGLLNVTQKGLYRDVMLENFALVSSLGLAPSRSPVFTQLEDDEQSWVPSWVDVTPVSRAEARRGFGLDGLCRVEDERAHPEHLKSYRVIQHQDTHSEGKPRRHTEHGAAFPPGSSCGQQQEVHVAEKLFKCSDCGKVFLKAFALLDHLITHSEERPFRCPTGRSAFKKSAHINPRKIHTGETAHVCNECGKAFSYPSKLRKHQKVHTGIKPFKCSDCGKTFNRKDALVLHQRIHTGERPYECSKCGKTFSVLSTLIRHRKVHIGERPYECTECGKFFKYNNSFILHQRVHTGERPFECKQCGKGYVTRSGLYQHWKVHTGERPYECSLCGKTFTTRSYRNRHQQFHTEERSYECTECGKAFKHSSTLLQHKKVHTPERRQEDRAHGKVVSC
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 17..88
2 C2h2 159..181
3 C2h2 214..236
4 C2h2 242..264
5 C2h2 270..292
6 C2h2 298..320
7 C2h2 326..348
8 C2h2 354..376
9 C2h2 382..404
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MIRb 914 **** 99.0 Highly correlated
2 L2a 719 **** 99.0 Highly correlated
3 MIR 607 **** 99.0 Highly correlated
4 MER41B 594 **** 74.0 Weakly correlated
5 L2c 583 **** 99.0 Highly correlated
6 MIRc 481 **** 99.0 Highly correlated
7 MIR3 470 **** 99.0 Highly correlated
8 L2b 446 **** 99.0 Highly correlated
9 MER41A 343 **** 74.0 Weakly correlated
10 AluJb 311 n.s 74.0 Weakly correlated
11 L2 305 **** 99.0 Highly correlated
12 AluSx1 225 n.s 74.0 Weakly correlated
13 AluSx 210 n.s 74.0 Weakly correlated
14 AluJr 196 n.s 74.0 Weakly correlated
15 AluJo 192 n.s 74.0 Weakly correlated
16 L3 187 **** 99.0 Highly correlated
17 LTR8 175 **** 43.0 Weakly correlated
18 AluSz 170 n.s 74.0 Weakly correlated
19 MLT1J 145 **** 99.0 Highly correlated
20 MLT1C 127 **** 94.0 Weakly correlated
21 MLT1K 113 **** 99.0 Highly correlated
22 L1MB7 98 n.s 99.0 Highly correlated
23 MIR1_Amn 95 **** 319.0 Weakly correlated
24 AluY 94 n.s 74.0 Weakly correlated
25 MLT1B 94 **** 99.0 Highly correlated
26 MLT1L 92 **** 99.0 Highly correlated
27 LTR54 90 **** 74.0 Weakly correlated
28 MLT1H 88 **** 99.0 Highly correlated
29 AluSq2 87 n.s 74.0 Weakly correlated
30 MLT1I 82 **** 99.0 Highly correlated
31 MLT1D 78 n.s 99.0 Highly correlated
32 LTR62 74 **** 74.0 Weakly correlated
33 FLAM_C 72 **** 74.0 Weakly correlated
34 MLT1H-int 71 **** 99.0 Highly correlated
35 AluSx3 69 n.s 74.0 Weakly correlated
36 LTR18B 69 **** 43.0 Weakly correlated
37 MLT1F 66 **** 99.0 Highly correlated
38 MLT1F-int 66 **** 99.0 Highly correlated
39 AluSp 65 n.s 74.0 Weakly correlated
40 L3b 64 **** 99.0 Highly correlated
41 MamRTE1 60 **** 99.0 Highly correlated
42 AluSg 59 n.s 74.0 Weakly correlated
43 AluSz6 59 n.s 74.0 Weakly correlated
44 L1M5 59 n.s 99.0 Highly correlated
45 LTR8B 59 **** 43.0 Weakly correlated
46 MER61E 58 **** 43.0 Weakly correlated
47 MLT1J2 54 **** 99.0 Highly correlated
48 LTR33 52 **** 99.0 Highly correlated
49 L1MC4 51 n.s 99.0 Highly correlated
50 LTR5_Hs 51 **** 0.0 Weakly correlated
51 MLT1H2 49 **** 99.0 Highly correlated
52 L1MC5a 48 n.s 99.0 Highly correlated
53 MLT1H2-int 48 **** 99.0 Highly correlated
54 HAL1 47 n.s 99.0 Highly correlated
55 L1ME1 47 n.s 99.0 Highly correlated
56 MER41-int 47 **** 74.0 Weakly correlated
57 MLT1A0 47 n.s 99.0 Highly correlated
58 AluSc 46 n.s 74.0 Weakly correlated
59 AluSq 45 n.s 74.0 Weakly correlated
60 ERVL-E-int 43 n.s 99.0 Highly correlated
61 L1ME4a 43 n.s 99.0 Highly correlated
62 MLT1F2-int 43 **** 99.0 Highly correlated
63 LTR9 42 **** 43.0 Weakly correlated
64 MSTA 41 n.s 43.0 Weakly correlated
65 LTR54B 40 **** 74.0 Weakly correlated
66 MER41C 40 **** 74.0 Weakly correlated
67 MLT1F1 40 **** 99.0 Highly correlated
68 MLT1J1 40 **** 99.0 Highly correlated
69 L1MB3 38 n.s 99.0 Highly correlated
70 L1MC3 37 n.s 99.0 Highly correlated
71 ERV3-16A3_I-int 36 n.s 99.0 Highly correlated
72 LTR16C 36 *** 99.0 Highly correlated
73 MLT1F2 36 * 99.0 Highly correlated
74 MER72 35 **** 43.0 Weakly correlated
75 L1M4 34 n.s 99.0 Highly correlated
76 MLT1A 34 n.s 99.0 Highly correlated
77 L1MC4a 33 n.s 99.0 Highly correlated
78 L1MEc 33 n.s 99.0 Highly correlated
79 LTR15 33 **** 28.9 Weakly correlated
80 MER41E 33 **** 74.0 Weakly correlated
81 MLT1O 33 **** 99.0 Highly correlated
82 L1MC5 32 n.s 99.0 Highly correlated
83 LTR13 32 **** 19.6 Weakly correlated
84 MLT1F1-int 32 **** 99.0 Highly correlated
85 THE1B 32 n.s 43.0 Weakly correlated
86 AmnSINE1 31 **** 319.0 Weakly correlated
87 L1ME3G 31 n.s 99.0 Highly correlated
88 LTR53 31 **** 99.0 Highly correlated
89 LTR8A 31 **** 43.0 Weakly correlated
90 MER50 31 **** 43.0 Weakly correlated
91 MLT1G1-int 31 **** 99.0 Highly correlated
92 LTR19B 30 **** 43.0 Weakly correlated
93 MER48 30 **** 28.9 Weakly correlated
94 AluJr4 29 n.s 74.0 Weakly correlated
95 FRAM 29 **** 74.0 Weakly correlated
96 L1ME3A 29 n.s 99.0 Highly correlated
97 LTR19C 29 **** 43.0 Weakly correlated
98 L1MB8 28 n.s 99.0 Highly correlated
99 L1ME3Cz 28 n.s 99.0 Highly correlated
100 L1MEd 28 n.s 99.0 Highly correlated
101 L1MEg 28 n.s 99.0 Highly correlated
102 L4_A_Mam 28 * 99.0 Highly correlated
103 MER49 28 **** 43.0 Weakly correlated
104 MER65A 28 **** 74.0 Weakly correlated
105 MLT1I-int 28 **** 99.0 Highly correlated
106 L1PA7 27 n.s 74.0 Weakly correlated
107 LTR50 27 **** 99.0 Highly correlated
108 LTR10A 26 **** 28.9 Weakly correlated
109 LTR67B 26 **** 99.0 Highly correlated
110 MLT1G3-int 26 **** 99.0 Highly correlated
111 LTR47A 25 **** 74.0 Weakly correlated
112 LTR2 24 **** 28.9 Weakly correlated
113 MER21C 24 n.s 99.0 Highly correlated
114 MLT1H1 24 ** 99.0 Highly correlated
115 MLT1N2 24 *** 99.0 Highly correlated
116 L1MD2 23 n.s 99.0 Highly correlated
117 L1ME4b 23 n.s 99.0 Highly correlated
118 MER66C 23 **** 43.0 Weakly correlated
119 MLT1H1-int 23 **** 99.0 Highly correlated
120 MLT1M 23 **** 99.0 Highly correlated
121 MamSINE1 23 **** 99.0 Highly correlated
122 AluSc8 22 n.s 74.0 Weakly correlated
123 L1MD3 22 n.s 99.0 Highly correlated
124 LTR6A 22 **** 28.9 Weakly correlated
125 LTR73 22 **** 99.0 Highly correlated
126 MER54A 22 **** 87.0 Weakly correlated
127 MER54B 22 **** 87.0 Weakly correlated
128 MLT1G3 22 *** 99.0 Highly correlated
129 MLT1J-int 22 **** 99.0 Highly correlated
130 ERVL-B4-int 21 n.s 99.0 Highly correlated
131 L1MB4 21 n.s 99.0 Highly correlated
132 L1MB5 21 n.s 99.0 Highly correlated
133 L1PB1 21 n.s 74.0 Weakly correlated
134 LTR45C 21 **** 99.0 Highly correlated
135 LTR6B 21 **** 19.6 Weakly correlated
136 MER21B 21 * 99.0 Highly correlated
137 MLT1G-int 21 **** 99.0 Highly correlated
138 THE1D 21 n.s 43.0 Weakly correlated
139 FLAM_A 20 n.s 74.0 Weakly correlated
140 L1MB2 20 n.s 99.0 Highly correlated
141 LFSINE_Vert 20 **** 319.0 Weakly correlated
142 LTR41B 20 **** 99.0 Highly correlated
143 LTR55 20 **** 99.0 Highly correlated
144 LTR76 20 **** 74.0 Weakly correlated
145 MER65D 20 **** 87.0 Weakly correlated
146 MER77B 20 **** 99.0 Highly correlated
147 MLT1G1 20 * 99.0 Highly correlated
148 MLT2F 20 **** 99.0 Highly correlated
149 Plat_L3 20 **** 99.0 Highly correlated
150 L1MC1 19 n.s 99.0 Highly correlated
151 L4_C_Mam 19 * 99.0 Highly correlated
152 LTR41C 19 **** 99.0 Highly correlated
153 LTR46 19 **** 43.0 Weakly correlated
154 MLT1D-int 19 **** 99.0 Highly correlated
155 Alu 18 **** 74.0 Weakly correlated
156 LTR13A 18 **** 28.9 Weakly correlated
157 LTR5B 18 **** 28.9 Weakly correlated
158 LTR78 18 n.s 99.0 Highly correlated
159 MER21A 18 ** 74.0 Weakly correlated
160 MER89 18 **** 99.0 Highly correlated
161 AluSg4 17 n.s 74.0 Weakly correlated
162 L1MA7 17 n.s 87.0 Weakly correlated
163 L1MA9 17 n.s 99.0 Highly correlated
164 LTR16E1 17 *** 99.0 Highly correlated
165 LTR78B 17 ** 99.0 Highly correlated
166 MER83 17 **** 43.0 Weakly correlated
167 MLT2B4 17 n.s 99.0 Highly correlated
168 MSTD 17 n.s 74.0 Weakly correlated
169 AluSc5 16 n.s 74.0 Weakly correlated
170 L1ME4c 16 n.s 99.0 Highly correlated
171 L1MEf 16 n.s 99.0 Highly correlated
172 L1PA2 16 n.s 15.2 Weakly correlated
173 LTR21A 16 **** 28.9 Weakly correlated
174 MER61F 16 **** 43.0 Weakly correlated
175 MLT1J2-int 16 **** 99.0 Highly correlated
176 HAL1ME 15 n.s 99.0 Highly correlated
177 L1M4b 15 n.s 99.0 Highly correlated
178 L1MCc 15 n.s 99.0 Highly correlated
179 L1MD 15 n.s 99.0 Highly correlated
180 L1PA16 15 n.s 74.0 Weakly correlated
181 LTR33A 15 *** 99.0 Highly correlated
182 LTR4 15 **** 28.9 Weakly correlated
183 LTR52 15 **** 99.0 Highly correlated
184 LTR7C 15 **** 28.9 Weakly correlated
185 MER39 15 n.s 74.0 Weakly correlated
186 MER57A-int 15 n.s 43.0 Weakly correlated
187 MLT1E2-int 15 **** 99.0 Highly correlated
188 HUERS-P3-int 14 * 43.0 Weakly correlated
189 L1M1 14 n.s 74.0 Weakly correlated
190 L1MA8 14 n.s 87.0 Weakly correlated
191 LTR18A 14 **** 43.0 Weakly correlated
192 LTR44 14 **** 74.0 Weakly correlated
193 LTR82A 14 **** 99.0 Highly correlated
194 MER4-int 14 n.s 74.0 Weakly correlated
195 MER41D 14 **** 74.0 Weakly correlated
196 MLT1J1-int 14 **** 99.0 Highly correlated
197 MSTB 14 n.s 43.0 Weakly correlated
198 MSTB1 14 n.s 74.0 Weakly correlated
199 AluSx4 13 n.s 74.0 Weakly correlated
200 CR1-3_Croc 13 **** 319.0 Weakly correlated
201 L1M4c 13 n.s 99.0 Highly correlated
202 L1ME2 13 n.s 99.0 Highly correlated
203 L1ME3 13 n.s 99.0 Highly correlated
204 L1PA13 13 n.s 74.0 Weakly correlated
205 L1PA6 13 n.s 28.9 Weakly correlated
206 L1PBa 13 n.s 74.0 Weakly correlated
207 L2-3_Crp 13 *** 431.0 Weakly correlated
208 LTR18C 13 **** 43.0 Weakly correlated
209 LTR19A 13 **** 43.0 Weakly correlated
210 LTR25 13 **** 43.0 Weakly correlated
211 LTR37A 13 ** 99.0 Highly correlated
212 LTR39 13 ** 43.0 Weakly correlated
213 LTR49-int 13 n.s 74.0 Weakly correlated
214 MER4D1 13 n.s 74.0 Weakly correlated
215 MLT2D 13 n.s 99.0 Highly correlated
216 MamRep605 13 n.s 99.0 Highly correlated
217 THE1C 13 n.s 43.0 Weakly correlated
218 HERVL-int 12 n.s 74.0 Weakly correlated
219 L1MDa 12 n.s 99.0 Highly correlated
220 L1ME2z 12 n.s 99.0 Highly correlated
221 LTR26 12 **** 74.0 Weakly correlated
222 LTR56 12 **** 74.0 Weakly correlated
223 LTR71B 12 **** 43.0 Weakly correlated
224 MER51A 12 ** 43.0 Weakly correlated
225 MER74A 12 * 99.0 Highly correlated
226 MER77 12 * 99.0 Highly correlated
227 MLT1A1 12 n.s 87.0 Weakly correlated
228 MLT1E2 12 n.s 99.0 Highly correlated
229 MLT1G 12 n.s 99.0 Highly correlated
230 THE1A 12 n.s 43.0 Weakly correlated
231 HERVK-int 11 * 28.9 Weakly correlated
232 HERVK22-int 11 n.s 43.0 Weakly correlated
233 L1MA3 11 n.s 74.0 Weakly correlated
234 L1MA4A 11 n.s 87.0 Weakly correlated
235 L1P2 11 n.s 28.9 Weakly correlated
236 LTR104_Mam 11 ** 99.0 Highly correlated
237 LTR16A1 11 n.s 99.0 Highly correlated
238 LTR17 11 * 28.9 Weakly correlated
239 MER34 11 ** 87.0 Weakly correlated
240 MER39B 11 * 74.0 Weakly correlated
241 MER57B1 11 *** 43.0 Weakly correlated
242 MER65B 11 **** 74.0 Weakly correlated
243 MER87 11 **** 43.0 Weakly correlated
244 MER90a 11 ** 99.0 Highly correlated
245 HERVE-int 10 n.s 19.6 Weakly correlated
246 HERVH-int 10 n.s 28.9 Weakly correlated
247 HUERS-P1-int 10 * 43.0 Weakly correlated
248 L1MC2 10 n.s 99.0 Highly correlated
249 L1MCa 10 n.s 99.0 Highly correlated
250 L1ME3D 10 n.s 99.0 Highly correlated
251 L1ME5 10 n.s 99.0 Highly correlated
252 L1PREC2 10 n.s 43.0 Weakly correlated
253 LTR16 10 n.s 99.0 Highly correlated
254 LTR24 10 **** 74.0 Weakly correlated
255 LTR2C 10 **** 19.6 Weakly correlated
256 LTR3 10 **** 28.9 Weakly correlated
257 LTR71A 10 **** 43.0 Weakly correlated
258 LTR79 10 n.s 99.0 Highly correlated
259 MLT2B2 10 n.s 99.0 Highly correlated
260 MamRep1527 10 ** 99.0 Highly correlated
261 PRIMA41-int 10 ** 74.0 Weakly correlated
262 AluSg7 9 n.s 74.0 Weakly correlated
263 ERVL-int 9 n.s 99.0 Highly correlated
264 HERV1_LTRc 9 **** 28.9 Weakly correlated
265 HERV1_LTRe 9 **** 43.0 Weakly correlated
266 HERVS71-int 9 * 28.9 Weakly correlated
267 L1M6 9 n.s 99.0 Highly correlated
268 L1MC 9 n.s 99.0 Highly correlated
269 L1ME3E 9 n.s 99.0 Highly correlated
270 L1PA5 9 n.s 19.6 Weakly correlated
271 L1PB4 9 n.s 99.0 Highly correlated
272 LTR16A 9 n.s 99.0 Highly correlated
273 LTR33A_ 9 n.s 99.0 Highly correlated
274 LTR36 9 *** 74.0 Weakly correlated
275 LTR40a 9 n.s 99.0 Highly correlated
276 LTR41 9 * 99.0 Highly correlated
277 LTR81A 9 *** 99.0 Highly correlated
278 LTR85b 9 *** 99.0 Highly correlated
279 LTR9D 9 ** 43.0 Weakly correlated
280 MER4C 9 *** 74.0 Weakly correlated
281 MER68 9 n.s 99.0 Highly correlated
282 MLT1E1A 9 n.s 99.0 Highly correlated
283 MamGypLTR2c 9 *** 99.0 Highly correlated
284 AluYc 8 n.s 74.0 Weakly correlated
285 AmnSINE2 8 **** 319.0 Weakly correlated
286 HAL1b 8 n.s 99.0 Highly correlated
287 HERVH48-int 8 ** 28.9 Weakly correlated
288 HERVL18-int 8 * 43.0 Weakly correlated
289 L1MA4 8 n.s 87.0 Weakly correlated
290 L1ME3F 8 n.s 99.0 Highly correlated
291 L2-1_AMi 8 *** 319.0 Weakly correlated
292 L4_B_Mam 8 n.s 99.0 Highly correlated
293 LTR13_ 8 **** 28.9 Weakly correlated
294 LTR47A2 8 **** 74.0 Weakly correlated
295 LTR75_1 8 **** 99.0 Highly correlated
296 MER41G 8 **** 74.0 Weakly correlated
297 MER4B 8 n.s 74.0 Weakly correlated
298 MER4CL34 8 * 43.0 Weakly correlated
299 MER74B 8 * 99.0 Highly correlated
300 MLT2B1 8 n.s 99.0 Highly correlated
301 MamGypLTR3a 8 ** 99.0 Highly correlated
302 MamGypsy2-I 8 n.s 99.0 Highly correlated
303 HERV15-int 7 ** 28.9 Weakly correlated
304 HERV1_LTRa 7 **** 28.9 Weakly correlated
305 L1MA10 7 n.s 99.0 Highly correlated
306 L1ME3B 7 n.s 99.0 Highly correlated
307 L1MEi 7 n.s 99.0 Highly correlated
308 L1PA10 7 n.s 74.0 Weakly correlated
309 L1PA11 7 n.s 74.0 Weakly correlated
310 L1PA3 7 n.s 19.6 Weakly correlated
311 LTR16B2 7 n.s 99.0 Highly correlated
312 LTR16E2 7 n.s 99.0 Highly correlated
313 LTR23 7 ** 74.0 Weakly correlated
314 LTR29 7 ** 43.0 Weakly correlated
315 LTR43 7 ** 74.0 Weakly correlated
316 LTR47B2 7 **** 74.0 Weakly correlated
317 LTR64 7 **** 74.0 Weakly correlated
318 LTR65 7 *** 99.0 Highly correlated
319 LTR9B 7 * 43.0 Weakly correlated
320 MER34A 7 n.s 99.0 Highly correlated
321 MER4A 7 n.s 74.0 Weakly correlated
322 MER51B 7 ** 43.0 Weakly correlated
323 MER51D 7 **** 43.0 Weakly correlated
324 MER65C 7 ** 74.0 Weakly correlated
325 MER66D 7 **** 43.0 Weakly correlated
326 MER73 7 **** 87.0 Weakly correlated
327 MLT1A0-int 7 n.s 99.0 Highly correlated
328 MLT1B-int 7 ** 99.0 Highly correlated
329 MLT2B3 7 n.s 99.0 Highly correlated
330 HERVK3-int 6 n.s 28.9 Weakly correlated
331 HERVP71A-int 6 * 43.0 Weakly correlated
332 HUERS-P3b-int 6 n.s 43.0 Weakly correlated
333 L1MA2 6 n.s 74.0 Weakly correlated
334 L1MB1 6 n.s 99.0 Highly correlated
335 L1MD1 6 n.s 99.0 Highly correlated
336 L1MEh 6 n.s 99.0 Highly correlated
337 L1PA4 6 n.s 19.6 Weakly correlated
338 LTR10C 6 * 28.9 Weakly correlated
339 LTR12C 6 n.s 19.6 Weakly correlated
340 LTR12F 6 * 28.9 Weakly correlated
341 LTR16A2 6 n.s 99.0 Highly correlated
342 LTR33B 6 n.s 99.0 Highly correlated
343 LTR51 6 ** 74.0 Weakly correlated
344 LTR85a 6 n.s 99.0 Highly correlated
345 LTR87 6 * 99.0 Highly correlated
346 MER31-int 6 n.s 99.0 Highly correlated
347 MER51E 6 **** 43.0 Weakly correlated
348 MER57-int 6 n.s 87.0 Weakly correlated
349 MER57B2 6 n.s 43.0 Weakly correlated
350 MER57C2 6 ** 87.0 Weakly correlated
351 MER61B 6 ** 43.0 Weakly correlated
352 MER61D 6 *** 43.0 Weakly correlated
353 MER67C 6 n.s 99.0 Highly correlated
354 MLT1E3-int 6 **** 99.0 Highly correlated
355 MLT2C1 6 n.s 99.0 Highly correlated
356 Penelope1_Vert 6 *** 319.0 Weakly correlated
357 X6A_LINE 6 *** 99.0 Highly correlated
358 X6B_LINE 6 *** 99.0 Highly correlated
359 AluYh3 5 n.s 15.2 Weakly correlated
360 AluYm1 5 n.s 19.6 Weakly correlated
361 ERV24B_Prim-int 5 * 74.0 Weakly correlated
362 FAM 5 n.s 87.0 Weakly correlated
363 HERV16-int 5 n.s 99.0 Highly correlated
364 HERV9NC-int 5 n.s 19.6 Weakly correlated
365 HERVL66-int 5 ** 43.0 Weakly correlated
366 L1M4a1 5 n.s 99.0 Highly correlated
367 L1MA5A 5 n.s 87.0 Weakly correlated
368 L1ME3C 5 n.s 99.0 Highly correlated
369 L1PA15 5 n.s 74.0 Weakly correlated
370 L1PBa1 5 n.s 74.0 Weakly correlated
371 LTR101_Mam 5 n.s 99.0 Highly correlated
372 LTR102_Mam 5 * 99.0 Highly correlated
373 LTR10F 5 * 28.9 Weakly correlated
374 LTR12E 5 ** 19.6 Weakly correlated
375 LTR14 5 **** 28.9 Weakly correlated
376 LTR16D 5 n.s 99.0 Highly correlated
377 LTR1A2 5 n.s 43.0 Weakly correlated
378 LTR2B 5 * 19.6 Weakly correlated
379 LTR31 5 ** 74.0 Weakly correlated
380 LTR40b 5 n.s 99.0 Highly correlated
381 LTR40c 5 * 99.0 Highly correlated
382 LTR53B 5 *** 99.0 Highly correlated
383 LTR7 5 n.s 19.6 Weakly correlated
384 LTR77 5 **** 94.0 Weakly correlated
385 MER110 5 * 99.0 Highly correlated
386 MER21-int 5 n.s 99.0 Highly correlated
387 MER34C2 5 * 74.0 Weakly correlated
388 MER4D 5 n.s 74.0 Weakly correlated
389 MER65-int 5 n.s 87.0 Weakly correlated
390 MER67A 5 ** 99.0 Highly correlated
391 MER67B 5 * 99.0 Highly correlated
392 MER68B 5 * 99.0 Highly correlated
393 MER74C 5 *** 99.0 Highly correlated
394 MER90 5 n.s 99.0 Highly correlated
395 MER92C 5 **** 99.0 Highly correlated
396 MLT1C-int 5 * 94.0 Weakly correlated
397 MLT1E3 5 n.s 99.0 Highly correlated
398 ERV24_Prim-int 4 n.s 74.0 Weakly correlated
399 HERVIP10FH-int 4 n.s 28.9 Weakly correlated
400 HERVK14-int 4 n.s 28.9 Weakly correlated
401 L1M2 4 n.s 99.0 Highly correlated
402 L1P3 4 n.s 74.0 Weakly correlated
403 L1PA15-16 4 n.s 74.0 Weakly correlated
404 LOR1-int 4 n.s 74.0 Weakly correlated
405 LTR10D 4 ** 28.9 Weakly correlated
406 LTR10E 4 * 28.9 Weakly correlated
407 LTR32 4 n.s 43.0 Weakly correlated
408 LTR33C 4 n.s 99.0 Highly correlated
409 LTR35A 4 **** 43.0 Weakly correlated
410 LTR40A1 4 * 99.0 Highly correlated
411 LTR45B 4 * 74.0 Weakly correlated
412 LTR69 4 *** 99.0 Highly correlated
413 LTR81B 4 n.s 99.0 Highly correlated
414 LTR85c 4 n.s 99.0 Highly correlated
415 LTR88a 4 * 99.0 Highly correlated
416 LTR91 4 *** 99.0 Highly correlated
417 MER31A 4 n.s 87.0 Weakly correlated
418 MER31B 4 n.s 99.0 Highly correlated
419 MER34-int 4 n.s 99.0 Highly correlated
420 MER57E1 4 * 87.0 Weakly correlated
421 MER61C 4 * 43.0 Weakly correlated
422 MER72B 4 ** 43.0 Weakly correlated
423 MER76 4 n.s 99.0 Highly correlated
424 MER92A 4 *** 99.0 Highly correlated
425 MLT1-int 4 ** 99.0 Highly correlated
426 MLT1E-int 4 **** 99.0 Highly correlated
427 MLT1E1A-int 4 *** 99.0 Highly correlated
428 MLT2A1 4 n.s 74.0 Weakly correlated
429 MLT2C2 4 n.s 99.0 Highly correlated
430 MLT2E 4 ** 99.0 Highly correlated
431 MSTA-int 4 n.s 43.0 Weakly correlated
432 MSTB-int 4 n.s 43.0 Weakly correlated
433 MamGypLTR1a 4 n.s 99.0 Highly correlated
434 PABL_A-int 4 n.s 74.0 Weakly correlated
435 SVA_A 4 n.s 19.6 Weakly correlated
436 X7A_LINE 4 * 319.0 Weakly correlated
437 X7C_LINE 4 ** 319.0 Weakly correlated
438 AluYa5 3 n.s 15.2 Weakly correlated
439 AluYj4 3 n.s 0.0 Weakly correlated
440 CR1_Mam 3 n.s 99.0 Highly correlated
441 ERV3-16A3_LTR 3 n.s 99.0 Highly correlated
442 HERV1_I-int 3 * 43.0 Weakly correlated
443 HERV35I-int 3 n.s 43.0 Weakly correlated
444 HERV9-int 3 n.s 28.9 Weakly correlated
445 HERVFH19-int 3 n.s 43.0 Weakly correlated
446 HERVK13-int 3 * 19.6 Weakly correlated
447 HERVL40-int 3 n.s 99.0 Highly correlated
448 HERVL74-int 3 n.s 99.0 Highly correlated
449 L1M2c 3 n.s 87.0 Weakly correlated
450 L1M3 3 n.s 99.0 Highly correlated
451 L1M3e 3 n.s 99.0 Highly correlated
452 L1M3f 3 n.s 87.0 Weakly correlated
453 L1M4a2 3 n.s 99.0 Highly correlated
454 L1M7 3 n.s 99.0 Highly correlated
455 L1M8 3 n.s 99.0 Highly correlated
456 L1MA6 3 n.s 87.0 Weakly correlated
457 L1MEb 3 n.s 99.0 Highly correlated
458 L1MEg2 3 n.s 99.0 Highly correlated
459 L1P4a 3 n.s 74.0 Weakly correlated
460 L1PA17 3 n.s 74.0 Weakly correlated
461 L1PA8 3 n.s 74.0 Weakly correlated
462 LTR107_Mam 3 * 99.0 Highly correlated
463 LTR14B 3 n.s 28.9 Weakly correlated
464 LTR14C 3 * 28.9 Weakly correlated
465 LTR16D1 3 ** 99.0 Highly correlated
466 LTR16D2 3 * 99.0 Highly correlated
467 LTR25-int 3 n.s 43.0 Weakly correlated
468 LTR26E 3 ** 74.0 Weakly correlated
469 LTR27D 3 * 43.0 Weakly correlated
470 LTR37-int 3 n.s 99.0 Highly correlated
471 LTR38 3 * 74.0 Weakly correlated
472 LTR3B_ 3 * 28.9 Weakly correlated
473 LTR42 3 * 74.0 Weakly correlated
474 LTR49 3 n.s 74.0 Weakly correlated
475 LTR75 3 * 99.0 Highly correlated
476 LTR82B 3 n.s 99.0 Highly correlated
477 LTR83 3 n.s 99.0 Highly correlated
478 LTR84a 3 n.s 99.0 Highly correlated
479 LTR88c 3 n.s 99.0 Highly correlated
480 LTR89 3 n.s 99.0 Highly correlated
481 LTR9A1 3 n.s 43.0 Weakly correlated
482 MER110A 3 n.s 99.0 Highly correlated
483 MER11A 3 n.s 28.9 Weakly correlated
484 MER11B 3 n.s 19.6 Weakly correlated
485 MER11D 3 n.s 19.6 Weakly correlated
486 MER34B 3 n.s 87.0 Weakly correlated
487 MER4B-int 3 n.s 99.0 Highly correlated
488 MER4E 3 n.s 74.0 Weakly correlated
489 MER61-int 3 n.s 43.0 Weakly correlated
490 MER61A 3 n.s 43.0 Weakly correlated
491 MER70B 3 n.s 87.0 Weakly correlated
492 MER70C 3 * 99.0 Highly correlated
493 MER87B 3 * 74.0 Weakly correlated
494 MER88 3 ** 99.0 Highly correlated
495 MLT1A-int 3 n.s 99.0 Highly correlated
496 MLT1E 3 n.s 99.0 Highly correlated
497 MLT1K-int 3 ** 99.0 Highly correlated
498 MLT2A2 3 n.s 74.0 Weakly correlated
499 MSTA1 3 n.s 74.0 Weakly correlated
500 MSTB2-int 3 * 74.0 Weakly correlated
501 MamGypLTR1c 3 n.s 99.0 Highly correlated
502 PABL_A 3 n.s 43.0 Weakly correlated
503 THE1C-int 3 n.s 43.0 Weakly correlated
504 X7B_LINE 3 * 319.0 Weakly correlated
505 AluSq10 2 n.s 74.0 Weakly correlated
506 AluYk3 2 n.s 19.6 Weakly correlated
507 CR1-L3A_Croc 2 ** 319.0 Weakly correlated
508 HAL1M8 2 n.s 99.0 Highly correlated
509 HERV-Fc1-int 2 ** 8.6 Weakly correlated
510 HERV17-int 2 n.s 28.9 Weakly correlated
511 HERV3-int 2 n.s 28.9 Weakly correlated
512 HERV9N-int 2 n.s 19.6 Weakly correlated
513 HERVFH21-int 2 n.s 28.9 Weakly correlated
514 HERVIP10F-int 2 n.s 28.9 Weakly correlated
515 HERVK9-int 2 n.s 28.9 Weakly correlated
516 L1HS 2 n.s 8.6 Weakly correlated
517 L1M3a 2 n.s 99.0 Highly correlated
518 L1M3c 2 n.s 99.0 Highly correlated
519 L1M6B 2 n.s 99.0 Highly correlated
520 L1MA5 2 n.s 87.0 Weakly correlated
521 L1MEg1 2 n.s 99.0 Highly correlated
522 L1MEj 2 n.s 99.0 Highly correlated
523 L1P1 2 n.s 19.6 Weakly correlated
524 L1P4 2 n.s 74.0 Weakly correlated
525 L1PB 2 n.s 74.0 Weakly correlated
526 L1PB2 2 n.s 74.0 Weakly correlated
527 L1PB3 2 n.s 74.0 Weakly correlated
528 LTR103b_Mam 2 n.s 99.0 Highly correlated
529 LTR106_Mam 2 n.s 99.0 Highly correlated
530 LTR108e_Mam 2 * 99.0 Highly correlated
531 LTR10B1 2 * 28.9 Weakly correlated
532 LTR12 2 n.s 28.9 Weakly correlated
533 LTR16B 2 n.s 99.0 Highly correlated
534 LTR16B1 2 n.s 99.0 Highly correlated
535 LTR1A1 2 n.s 43.0 Weakly correlated
536 LTR23-int 2 * 74.0 Weakly correlated
537 LTR24B 2 n.s 74.0 Weakly correlated
538 LTR2752 2 n.s 43.0 Weakly correlated
539 LTR28B 2 n.s 43.0 Weakly correlated
540 LTR30 2 n.s 28.9 Weakly correlated
541 LTR35 2 ** 43.0 Weakly correlated
542 LTR37B 2 n.s 99.0 Highly correlated
543 LTR38B 2 n.s 74.0 Weakly correlated
544 LTR3A 2 n.s 28.9 Weakly correlated
545 LTR3B 2 ** 28.9 Weakly correlated
546 LTR47B 2 *** 74.0 Weakly correlated
547 LTR47B4 2 * 74.0 Weakly correlated
548 LTR57 2 n.s 74.0 Weakly correlated
549 LTR58 2 ** 99.0 Highly correlated
550 LTR5A 2 n.s 19.6 Weakly correlated
551 LTR81 2 * 99.0 Highly correlated
552 LTR81C 2 n.s 99.0 Highly correlated
553 LTR84b 2 n.s 99.0 Highly correlated
554 LTR86B2 2 * 99.0 Highly correlated
555 LTR88b 2 n.s 99.0 Highly correlated
556 LTR90B 2 n.s 99.0 Highly correlated
557 MER101 2 n.s 74.0 Weakly correlated
558 MER101-int 2 n.s 74.0 Weakly correlated
559 MER34C_ 2 n.s 87.0 Weakly correlated
560 MER34D 2 n.s 74.0 Weakly correlated
561 MER4A1 2 n.s 74.0 Weakly correlated
562 MER50-int 2 n.s 43.0 Weakly correlated
563 MER50B 2 n.s 43.0 Weakly correlated
564 MER51C 2 n.s 43.0 Weakly correlated
565 MER52-int 2 n.s 99.0 Highly correlated
566 MER57A1 2 n.s 43.0 Weakly correlated
567 MER57C1 2 * 74.0 Weakly correlated
568 MER57F 2 n.s 74.0 Weakly correlated
569 MER66-int 2 n.s 43.0 Weakly correlated
570 MER66A 2 n.s 43.0 Weakly correlated
571 MER66B 2 n.s 43.0 Weakly correlated
572 MER70A 2 n.s 87.0 Weakly correlated
573 MER92B 2 n.s 99.0 Highly correlated
574 MSTC 2 n.s 74.0 Weakly correlated
575 MamGypLTR2b 2 n.s 99.0 Highly correlated
576 MamRep1151 2 n.s 99.0 Highly correlated
577 Mam_R4 2 n.s 99.0 Highly correlated
578 PABL_B-int 2 n.s 74.0 Weakly correlated
579 SVA_B 2 n.s 15.2 Weakly correlated
580 SVA_C 2 n.s 15.2 Weakly correlated
581 SVA_F 2 n.s 0.0 Weakly correlated
582 X1_LINE 2 ** 319.0 Weakly correlated
583 X9_LINE 2 * 319.0 Weakly correlated
584 AluYe5 1 n.s 74.0 Weakly correlated
585 AluYh3a3 1 n.s 15.2 Weakly correlated
586 AluYi6 1 n.s 15.2 Weakly correlated
587 AluYk11 1 n.s 15.2 Weakly correlated
588 AluYk2 1 n.s 19.6 Weakly correlated
589 ERVL47-int 1 n.s 74.0 Weakly correlated
590 HERV-Fc1_LTR1 1 ** 15.2 Weakly correlated
591 HERV1_LTRd 1 ** 43.0 Weakly correlated
592 HERV30-int 1 n.s 28.9 Weakly correlated
593 HERVIP10B3-int 1 n.s 28.9 Weakly correlated
594 Harlequin-int 1 n.s 74.0 Weakly correlated
595 L1M 1 n.s 74.0 Weakly correlated
596 L1M2a 1 n.s 87.0 Weakly correlated
597 L1MA1 1 n.s 74.0 Weakly correlated
598 L1MDb 1 n.s 99.0 Highly correlated
599 L1PA12 1 n.s 74.0 Weakly correlated
600 L1PA14 1 n.s 74.0 Weakly correlated
601 L1PBb 1 n.s 74.0 Weakly correlated
602 LOR1a 1 n.s 74.0 Weakly correlated
603 LTR103_Mam 1 n.s 99.0 Highly correlated
604 LTR108d_Mam 1 * 99.0 Highly correlated
605 LTR10B 1 n.s 28.9 Weakly correlated
606 LTR10B2 1 n.s 28.9 Weakly correlated
607 LTR10G 1 n.s 28.9 Weakly correlated
608 LTR12D 1 n.s 19.6 Weakly correlated
609 LTR14A 1 n.s 28.9 Weakly correlated
610 LTR19-int 1 n.s 43.0 Weakly correlated
611 LTR26D 1 n.s 0.0 Weakly correlated
612 LTR27C 1 n.s 43.0 Weakly correlated
613 LTR34 1 n.s 74.0 Weakly correlated
614 LTR38A1 1 n.s 74.0 Weakly correlated
615 LTR43B 1 n.s 74.0 Weakly correlated
616 LTR46-int 1 n.s 74.0 Weakly correlated
617 LTR48B 1 n.s 74.0 Weakly correlated
618 LTR53-int 1 n.s 99.0 Highly correlated
619 LTR60B 1 n.s 74.0 Weakly correlated
620 LTR61 1 n.s 43.0 Weakly correlated
621 LTR72B 1 n.s 74.0 Weakly correlated
622 LTR7B 1 n.s 28.9 Weakly correlated
623 LTR86B1 1 n.s 99.0 Highly correlated
624 LTR86C 1 n.s 99.0 Highly correlated
625 MER34A1 1 n.s 99.0 Highly correlated
626 MER34B-int 1 n.s 99.0 Highly correlated
627 MER34C 1 n.s 87.0 Weakly correlated
628 MER52C 1 n.s 74.0 Weakly correlated
629 MER52D 1 n.s 74.0 Weakly correlated
630 MER57E3 1 n.s 74.0 Weakly correlated
631 MER67D 1 n.s 99.0 Highly correlated
632 MER83A-int 1 n.s 99.0 Highly correlated
633 MER83C 1 n.s 43.0 Weakly correlated
634 MER84 1 n.s 43.0 Weakly correlated
635 MER95 1 n.s 99.0 Highly correlated
636 MER9a1 1 n.s 19.6 Weakly correlated
637 MLT1A1-int 1 n.s 87.0 Weakly correlated
638 MLT1E1 1 n.s 99.0 Highly correlated
639 MLT1N2-int 1 * 99.0 Highly correlated
640 MSTB2 1 n.s 74.0 Weakly correlated
641 MSTD-int 1 n.s 74.0 Weakly correlated
642 MamGyp-int 1 n.s 99.0 Highly correlated
643 MamGypLTR1b 1 n.s 99.0 Highly correlated
644 MamGypLTR1d 1 n.s 99.0 Highly correlated
645 MamGypLTR3 1 n.s 99.0 Highly correlated
646 PRIMA4_LTR 1 n.s 74.0 Weakly correlated
647 PrimLTR79 1 n.s 74.0 Weakly correlated
648 SVA_D 1 n.s 15.2 Weakly correlated
649 THE1B-int 1 n.s 43.0 Weakly correlated
650 UCON86 1 ** 319.0 Weakly correlated
651 X7D_LINE 1 ** 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L2a 78 n.s 99.0 Highly correlated
2 MIRb 68 n.s 99.0 Highly correlated
3 L2c 67 n.s 99.0 Highly correlated
4 MIR 40 n.s 99.0 Highly correlated
5 L2 37 n.s 99.0 Highly correlated
6 MIRc 36 n.s 99.0 Highly correlated
7 L2b 35 n.s 99.0 Highly correlated
8 MER41B 29 **** 74.0 Weakly correlated
9 MER61E 28 **** 43.0 Weakly correlated
10 LTR62 27 **** 74.0 Weakly correlated
11 MIR3 26 n.s 99.0 Highly correlated
12 LTR54 24 **** 74.0 Weakly correlated
13 L3 18 n.s 99.0 Highly correlated
14 LTR53 17 **** 99.0 Highly correlated
15 LTR15 15 **** 28.9 Weakly correlated
16 LTR19B 15 **** 43.0 Weakly correlated
17 MER41A 15 n.s 74.0 Weakly correlated
18 MER72 15 **** 43.0 Weakly correlated
19 MER49 14 ** 43.0 Weakly correlated
20 AluJb 14 n.s 74.0 Weakly correlated
21 LTR45C 12 **** 99.0 Highly correlated
22 LTR19C 12 **** 43.0 Weakly correlated
23 MER54B 12 **** 87.0 Weakly correlated
24 LTR2 10 ** 28.9 Weakly correlated
25 LTR76 10 **** 74.0 Weakly correlated
26 LTR6A 10 **** 28.9 Weakly correlated
27 MER61F 9 **** 43.0 Weakly correlated
28 LTR52 9 ** 99.0 Highly correlated
29 MLT1B 9 n.s 99.0 Highly correlated
30 LTR6B 9 **** 19.6 Weakly correlated
31 MLT1C 9 n.s 94.0 Weakly correlated
32 LTR21A 8 **** 28.9 Weakly correlated
33 MER41E 8 **** 74.0 Weakly correlated
34 LTR13 8 n.s 19.6 Weakly correlated
35 LTR55 8 *** 99.0 Highly correlated
36 L3b 8 n.s 99.0 Highly correlated
37 LTR13A 8 *** 28.9 Weakly correlated
38 MLT1J 8 n.s 99.0 Highly correlated
39 MLT1L 7 n.s 99.0 Highly correlated
40 LTR73 7 **** 99.0 Highly correlated
41 MLT1K 7 n.s 99.0 Highly correlated
42 AluJo 7 n.s 74.0 Weakly correlated
43 LTR5B 7 n.s 28.9 Weakly correlated
44 LTR8B 7 n.s 43.0 Weakly correlated
45 LTR46 7 **** 43.0 Weakly correlated
46 MLT1D 7 n.s 99.0 Highly correlated
47 L1MEg 6 n.s 99.0 Highly correlated
48 LTR8 6 n.s 43.0 Weakly correlated
49 HAL1 6 n.s 99.0 Highly correlated
50 LTR24 6 *** 74.0 Weakly correlated
51 MLT1I 6 n.s 99.0 Highly correlated
52 MLT1H 6 n.s 99.0 Highly correlated
53 MamRTE1 6 n.s 99.0 Highly correlated
54 LTR33 5 n.s 99.0 Highly correlated
55 L1MC5a 5 n.s 99.0 Highly correlated
56 MER4C 5 n.s 74.0 Weakly correlated
57 L2-3_Crp 5 n.s 431.0 Weakly correlated
58 LTR5_Hs 5 n.s 0.0 Weakly correlated
59 LTR26 5 n.s 74.0 Weakly correlated
60 MLT1H2 5 n.s 99.0 Highly correlated
61 LTR16C 5 n.s 99.0 Highly correlated
62 MER50 5 n.s 43.0 Weakly correlated
63 MER83 5 * 43.0 Weakly correlated
64 HERV1_LTRc 5 **** 28.9 Weakly correlated
65 MER34 5 n.s 87.0 Weakly correlated
66 MER89 5 n.s 99.0 Highly correlated
67 MER90a 5 n.s 99.0 Highly correlated
68 MLT1A 5 n.s 99.0 Highly correlated
69 MLT1F 5 n.s 99.0 Highly correlated
70 LTR25 5 ** 43.0 Weakly correlated
71 MLT1J1 5 n.s 99.0 Highly correlated
72 HERVH-int 4 n.s 28.9 Weakly correlated
73 LTR50 4 n.s 99.0 Highly correlated
74 MER77 4 n.s 99.0 Highly correlated
75 L1MC3 4 n.s 99.0 Highly correlated
76 LTR39 4 n.s 43.0 Weakly correlated
77 AluJr 4 n.s 74.0 Weakly correlated
78 HERVK22-int 4 n.s 43.0 Weakly correlated
79 L1MB3 4 n.s 99.0 Highly correlated
80 LTR4 4 *** 28.9 Weakly correlated
81 LTR75_1 4 *** 99.0 Highly correlated
82 L1PA7 4 n.s 74.0 Weakly correlated
83 LTR9 4 n.s 43.0 Weakly correlated
84 MER4CL34 4 n.s 43.0 Weakly correlated
85 MER65D 4 * 87.0 Weakly correlated
86 HERV1_LTRa 4 **** 28.9 Weakly correlated
87 L1M5 4 n.s 99.0 Highly correlated
88 L1MEc 4 n.s 99.0 Highly correlated
89 LTR71B 4 ** 43.0 Weakly correlated
90 MER61D 4 ** 43.0 Weakly correlated
91 L4_A_Mam 4 n.s 99.0 Highly correlated
92 LTR29 4 n.s 43.0 Weakly correlated
93 LTR36 4 n.s 74.0 Weakly correlated
94 MER74B 4 n.s 99.0 Highly correlated
95 HERV1_LTRe 3 **** 43.0 Weakly correlated
96 LTR32 3 n.s 43.0 Weakly correlated
97 MLT1F-int 3 n.s 99.0 Highly correlated
98 MLT1J2 3 n.s 99.0 Highly correlated
99 MSTA 3 n.s 43.0 Weakly correlated
100 L4_C_Mam 3 n.s 99.0 Highly correlated
101 LFSINE_Vert 3 n.s 319.0 Weakly correlated
102 LTR18B 3 n.s 43.0 Weakly correlated
103 MIR1_Amn 3 n.s 319.0 Weakly correlated
104 MLT1A0 3 n.s 99.0 Highly correlated
105 AluSz6 3 n.s 74.0 Weakly correlated
106 L1M4 3 n.s 99.0 Highly correlated
107 ERV3-16A3_I-int 3 n.s 99.0 Highly correlated
108 ERVL-B4-int 3 n.s 99.0 Highly correlated
109 HERVP71A-int 3 n.s 43.0 Weakly correlated
110 L1ME3Cz 3 n.s 99.0 Highly correlated
111 LTR9B 3 n.s 43.0 Weakly correlated
112 MLT1H1 3 n.s 99.0 Highly correlated
113 THE1B 3 n.s 43.0 Weakly correlated
114 L1ME4b 3 n.s 99.0 Highly correlated
115 ERVL-E-int 3 n.s 99.0 Highly correlated
116 L1MC4 3 n.s 99.0 Highly correlated
117 L1MEd 3 n.s 99.0 Highly correlated
118 MLT1G3 3 n.s 99.0 Highly correlated
119 MamSINE1 3 n.s 99.0 Highly correlated
120 LTR16E1 3 n.s 99.0 Highly correlated
121 MER34A 3 n.s 99.0 Highly correlated
122 L1ME3G 3 n.s 99.0 Highly correlated
123 LTR65 3 n.s 99.0 Highly correlated
124 LTR9D 3 n.s 43.0 Weakly correlated
125 MER54A 3 n.s 87.0 Weakly correlated
126 MER61C 3 * 43.0 Weakly correlated
127 MLT1N2 3 n.s 99.0 Highly correlated
128 CR1-3_Croc 2 n.s 319.0 Weakly correlated
129 HERVL-int 2 n.s 74.0 Weakly correlated
130 L1MD3 2 n.s 99.0 Highly correlated
131 L1ME1 2 n.s 99.0 Highly correlated
132 LTR64 2 n.s 74.0 Weakly correlated
133 LTR77 2 * 94.0 Weakly correlated
134 MER88 2 ** 99.0 Highly correlated
135 MLT1B-int 2 n.s 99.0 Highly correlated
136 HERVE-int 2 n.s 19.6 Weakly correlated
137 L1MA9 2 n.s 99.0 Highly correlated
138 L1MB5 2 n.s 99.0 Highly correlated
139 L1ME3A 2 n.s 99.0 Highly correlated
140 L1ME4a 2 n.s 99.0 Highly correlated
141 LTR31 2 n.s 74.0 Weakly correlated
142 MER72B 2 n.s 43.0 Weakly correlated
143 MLT1D-int 2 n.s 99.0 Highly correlated
144 MLT1J-int 2 n.s 99.0 Highly correlated
145 MSTD 2 n.s 74.0 Weakly correlated
146 L1MB7 2 n.s 99.0 Highly correlated
147 LTR44 2 n.s 74.0 Weakly correlated
148 LTR54B 2 n.s 74.0 Weakly correlated
149 LTR71A 2 * 43.0 Weakly correlated
150 MER11D 2 n.s 19.6 Weakly correlated
151 MER70C 2 n.s 99.0 Highly correlated
152 MLT1I-int 2 n.s 99.0 Highly correlated
153 X6A_LINE 2 n.s 99.0 Highly correlated
154 ERVL-int 2 n.s 99.0 Highly correlated
155 L1MC5 2 n.s 99.0 Highly correlated
156 L1MCa 2 n.s 99.0 Highly correlated
157 L1MD2 2 n.s 99.0 Highly correlated
158 MER31-int 2 n.s 99.0 Highly correlated
159 MER4A 2 n.s 74.0 Weakly correlated
160 MER4D 2 n.s 74.0 Weakly correlated
161 MER87 2 * 43.0 Weakly correlated
162 MLT1F2 2 n.s 99.0 Highly correlated
163 MLT1M 2 n.s 99.0 Highly correlated
164 L1MB2 2 n.s 99.0 Highly correlated
165 LTR47A2 2 n.s 74.0 Weakly correlated
166 LTR81A 2 n.s 99.0 Highly correlated
167 MER11A 2 n.s 28.9 Weakly correlated
168 MER66C 2 n.s 43.0 Weakly correlated
169 MER68 2 n.s 99.0 Highly correlated
170 MER73 2 n.s 87.0 Weakly correlated
171 MLT1G 2 n.s 99.0 Highly correlated
172 MLT1G-int 2 n.s 99.0 Highly correlated
173 MLT1G1 2 n.s 99.0 Highly correlated
174 MLT1O 2 n.s 99.0 Highly correlated
175 L1MB4 2 n.s 99.0 Highly correlated
176 L1MD1 2 n.s 99.0 Highly correlated
177 LTR47A 2 n.s 74.0 Weakly correlated
178 LTR85b 2 n.s 99.0 Highly correlated
179 MER77B 2 n.s 99.0 Highly correlated
180 AluSx1 2 n.s 74.0 Weakly correlated
181 HAL1ME 2 n.s 99.0 Highly correlated
182 L1ME4c 2 n.s 99.0 Highly correlated
183 LTR19A 2 n.s 43.0 Weakly correlated
184 LTR53B 2 n.s 99.0 Highly correlated
185 LTR56 2 n.s 74.0 Weakly correlated
186 LTR9A1 2 n.s 43.0 Weakly correlated
187 MLT1F1-int 2 n.s 99.0 Highly correlated
188 MLT1G3-int 2 n.s 99.0 Highly correlated
189 MLT1H2-int 2 n.s 99.0 Highly correlated
190 MLT1J2-int 2 n.s 99.0 Highly correlated
191 THE1D 2 n.s 43.0 Weakly correlated
192 L1PA10 2 n.s 74.0 Weakly correlated
193 LTR101_Mam 2 n.s 99.0 Highly correlated
194 LTR14 2 * 28.9 Weakly correlated
195 LTR85a 2 n.s 99.0 Highly correlated
196 MER110 2 n.s 99.0 Highly correlated
197 MER4A1 2 n.s 74.0 Weakly correlated
198 MER51E 2 n.s 43.0 Weakly correlated
199 MER61B 2 n.s 43.0 Weakly correlated
200 MLT1F1 2 n.s 99.0 Highly correlated
201 L1M2c 1 n.s 87.0 Weakly correlated
202 L1ME2 1 n.s 99.0 Highly correlated
203 L1MEf 1 n.s 99.0 Highly correlated
204 L1PA15 1 n.s 74.0 Weakly correlated
205 L1PBa 1 n.s 74.0 Weakly correlated
206 LTR27C 1 n.s 43.0 Weakly correlated
207 LTR37A 1 n.s 99.0 Highly correlated
208 MER48 1 n.s 28.9 Weakly correlated
209 MER4E 1 n.s 74.0 Weakly correlated
210 MER57-int 1 n.s 87.0 Weakly correlated
211 MER67C 1 n.s 99.0 Highly correlated
212 MER87B 1 n.s 74.0 Weakly correlated
213 MER92B 1 n.s 99.0 Highly correlated
214 MLT1H-int 1 n.s 99.0 Highly correlated
215 MLT2B2 1 n.s 99.0 Highly correlated
216 MLT2C2 1 n.s 99.0 Highly correlated
217 MamRep605 1 n.s 99.0 Highly correlated
218 Mam_R4 1 n.s 99.0 Highly correlated
219 X7A_LINE 1 n.s 319.0 Weakly correlated
220 AluSx 1 n.s 74.0 Weakly correlated
221 L1MA8 1 n.s 87.0 Weakly correlated
222 L1PA17 1 n.s 74.0 Weakly correlated
223 L1PB4 1 n.s 99.0 Highly correlated
224 LTR14C 1 n.s 28.9 Weakly correlated
225 LTR33A 1 n.s 99.0 Highly correlated
226 LTR38 1 n.s 74.0 Weakly correlated
227 LTR78 1 n.s 99.0 Highly correlated
228 MER21C 1 n.s 99.0 Highly correlated
229 MER34C2 1 n.s 74.0 Weakly correlated
230 MER39 1 n.s 74.0 Weakly correlated
231 MER4-int 1 n.s 74.0 Weakly correlated
232 MLT1E 1 n.s 99.0 Highly correlated
233 MamGypLTR2c 1 n.s 99.0 Highly correlated
234 MamGypsy2-I 1 n.s 99.0 Highly correlated
235 ERVL47-int 1 n.s 74.0 Weakly correlated
236 FLAM_C 1 n.s 74.0 Weakly correlated
237 HERVK13-int 1 n.s 19.6 Weakly correlated
238 HUERS-P3-int 1 n.s 43.0 Weakly correlated
239 L1M1 1 n.s 74.0 Weakly correlated
240 L1PA13 1 n.s 74.0 Weakly correlated
241 LTR104_Mam 1 n.s 99.0 Highly correlated
242 LTR3B 1 n.s 28.9 Weakly correlated
243 LTR40c 1 n.s 99.0 Highly correlated
244 LTR75 1 n.s 99.0 Highly correlated
245 MER34A1 1 n.s 99.0 Highly correlated
246 MER41-int 1 n.s 74.0 Weakly correlated
247 MER57A-int 1 n.s 43.0 Weakly correlated
248 MER67B 1 n.s 99.0 Highly correlated
249 MER83C 1 n.s 43.0 Weakly correlated
250 MER92A 1 n.s 99.0 Highly correlated
251 MLT1E2 1 n.s 99.0 Highly correlated
252 MLT1E3 1 n.s 99.0 Highly correlated
253 MamRep1527 1 n.s 99.0 Highly correlated
254 THE1C 1 n.s 43.0 Weakly correlated
255 AmnSINE1 1 n.s 319.0 Weakly correlated
256 L1M4b 1 n.s 99.0 Highly correlated
257 L1M7 1 n.s 99.0 Highly correlated
258 L1MCc 1 n.s 99.0 Highly correlated
259 L1PREC2 1 n.s 43.0 Weakly correlated
260 L2-1_AMi 1 n.s 319.0 Weakly correlated
261 LTR102_Mam 1 n.s 99.0 Highly correlated
262 LTR10E 1 n.s 28.9 Weakly correlated
263 LTR2B 1 n.s 19.6 Weakly correlated
264 LTR2C 1 n.s 19.6 Weakly correlated
265 LTR41C 1 n.s 99.0 Highly correlated
266 LTR43 1 n.s 74.0 Weakly correlated
267 LTR88a 1 n.s 99.0 Highly correlated
268 MER101-int 1 n.s 74.0 Weakly correlated
269 MER21-int 1 n.s 99.0 Highly correlated
270 MER21B 1 n.s 99.0 Highly correlated
271 MER50-int 1 n.s 43.0 Weakly correlated
272 MER66D 1 n.s 43.0 Weakly correlated
273 MER83A-int 1 n.s 99.0 Highly correlated
274 THE1C-int 1 n.s 43.0 Weakly correlated
275 X1_LINE 1 * 319.0 Weakly correlated
276 HERV16-int 1 n.s 99.0 Highly correlated
277 HERV1_I-int 1 n.s 43.0 Weakly correlated
278 HERVK14-int 1 n.s 28.9 Weakly correlated
279 HUERS-P3b-int 1 n.s 43.0 Weakly correlated
280 L1M3 1 n.s 99.0 Highly correlated
281 L1MEj 1 n.s 99.0 Highly correlated
282 LTR16A 1 n.s 99.0 Highly correlated
283 LTR41B 1 n.s 99.0 Highly correlated
284 MER4B 1 n.s 74.0 Weakly correlated
285 MER57C2 1 n.s 87.0 Weakly correlated
286 MER74A 1 n.s 99.0 Highly correlated
287 MER90 1 n.s 99.0 Highly correlated
288 MER92C 1 n.s 99.0 Highly correlated
289 MLT1E2-int 1 n.s 99.0 Highly correlated
290 MLT1E3-int 1 n.s 99.0 Highly correlated
291 MLT1H1-int 1 n.s 99.0 Highly correlated
292 AluSq2 1 n.s 74.0 Weakly correlated
293 L1MA5A 1 n.s 87.0 Weakly correlated
294 L1PA15-16 1 n.s 74.0 Weakly correlated
295 L1PBa1 1 n.s 74.0 Weakly correlated
296 LTR37-int 1 n.s 99.0 Highly correlated
297 LTR78B 1 n.s 99.0 Highly correlated
298 MER65C 1 n.s 74.0 Weakly correlated
299 MLT2B1 1 n.s 99.0 Highly correlated
300 MLT2E 1 n.s 99.0 Highly correlated
301 AluSx3 1 n.s 74.0 Weakly correlated
302 AluSz 1 n.s 74.0 Weakly correlated
303 HERVIP10F-int 1 n.s 28.9 Weakly correlated
304 L1MA2 1 n.s 74.0 Weakly correlated
305 L1MA4 1 n.s 87.0 Weakly correlated
306 L1MC 1 n.s 99.0 Highly correlated
307 L1ME3 1 n.s 99.0 Highly correlated
308 L1MEb 1 n.s 99.0 Highly correlated
309 L1PB1 1 n.s 74.0 Weakly correlated
310 LTR106_Mam 1 n.s 99.0 Highly correlated
311 LTR10D 1 n.s 28.9 Weakly correlated
312 LTR49-int 1 n.s 74.0 Weakly correlated
313 LTR61 1 n.s 43.0 Weakly correlated
314 MER41D 1 n.s 74.0 Weakly correlated
315 MER4D1 1 n.s 74.0 Weakly correlated
316 MER51C 1 n.s 43.0 Weakly correlated
317 MER51D 1 n.s 43.0 Weakly correlated
318 MER70A 1 n.s 87.0 Weakly correlated
319 MLT2B4 1 n.s 99.0 Highly correlated
320 Plat_L3 1 n.s 99.0 Highly correlated
321 HERV1_LTRd 1 ** 43.0 Weakly correlated
322 L1M4a1 1 n.s 99.0 Highly correlated
323 L1MC1 1 n.s 99.0 Highly correlated
324 L1MD 1 n.s 99.0 Highly correlated
325 L1MEi 1 n.s 99.0 Highly correlated
326 L1P2 1 n.s 28.9 Weakly correlated
327 L1P3 1 n.s 74.0 Weakly correlated
328 LOR1-int 1 n.s 74.0 Weakly correlated
329 LTR1A2 1 n.s 43.0 Weakly correlated
330 LTR60B 1 n.s 74.0 Weakly correlated
331 LTR82A 1 n.s 99.0 Highly correlated
332 MER31B 1 n.s 99.0 Highly correlated
333 MER74C 1 n.s 99.0 Highly correlated
334 MSTB 1 n.s 43.0 Weakly correlated
335 PABL_A 1 n.s 43.0 Weakly correlated
336 X6B_LINE 1 n.s 99.0 Highly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 HAL1 99.0 Highly correlated
2 L1MEG 99.0 Highly correlated
3 L2 99.0 Highly correlated
4 L2A 99.0 Highly correlated
5 L2C 99.0 Highly correlated
6 L3 99.0 Highly correlated
7 L3B 99.0 Highly correlated
8 LTR13 19.6 Weakly correlated
9 LTR13A 28.9 Weakly correlated
10 LTR15 28.9 Weakly correlated
11 LTR19B 43.0 Weakly correlated
12 LTR19C 43.0 Weakly correlated
13 LTR2 28.9 Weakly correlated
14 LTR21A 28.9 Weakly correlated
15 LTR24 74.0 Weakly correlated
16 LTR45C 99.0 Highly correlated
17 LTR46 43.0 Weakly correlated
18 LTR53 99.0 Highly correlated
19 LTR54 74.0 Weakly correlated
20 LTR55 99.0 Highly correlated
21 LTR5B 28.9 Weakly correlated
22 LTR62 74.0 Weakly correlated
23 LTR6A 28.9 Weakly correlated
24 LTR6B 19.6 Weakly correlated
25 LTR73 99.0 Highly correlated
26 LTR76 74.0 Weakly correlated
27 LTR8 43.0 Weakly correlated
28 MER41A 74.0 Weakly correlated
29 MER41B 74.0 Weakly correlated
30 MER41E 74.0 Weakly correlated
31 MER54B 87.0 Weakly correlated
32 MER61F 43.0 Weakly correlated
33 MER72 43.0 Weakly correlated
34 MIR3 99.0 Highly correlated
35 MIRB 99.0 Highly correlated
36 MIRC 99.0 Highly correlated
37 MLT1B 99.0 Highly correlated
38 MLT1C 94.0 Weakly correlated
39 MLT1D 99.0 Highly correlated
40 MLT1J 99.0 Highly correlated
41 MLT1L 99.0 Highly correlated
42 MAMRTE1 99.0 Highly correlated