ZRdb KZFP & Repeats
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Human_ZNF560

  • Protein
    Zinc finger protein 560
  • Length
    790
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    74.0 Mya
  • Time of Changing in binding specificity
    43.0 Mya
  • Uniprot_ID
  • NCBI_ID
Sequence:
MAYCLTNCYQYSVTFEDTAVDFTQEEWILLDPVQRNLYRDVMLENYENVAKVGFQLFKPSVISWLEEEELRTLQQGVLQDWAIKHQTSVSALQQEFWKIQTSNGIQMDLVTFDSVAVEFTQEEWTLLDPAQRNLYSDVMLENYKNLSSVGYQLFKPSLISWLEEEEELSTLPRVLQEWKMCLKTKGPALWQDNFCLKTLNGIQLARNQNGEELYDCKQCEDVFCKHPCLKTNMSTQNRGNTSECIQYAKDLLSLYNKTSTIRKVSVFSKHGKSFRLILNVQVQRKCTQDKSFEGTDYGKAFIYQSYLEAHRKTQSGEKLNEWKQCGEAFTHSTSHAVNVETHIIKNPYECKECGKDFRYPTHLNNHMQTHIGIKPYKCKHCGKTFTVPSGFLEHVRTHTGEKPYGCKECGKAFGTSAGLIEHIRCHAREKTFKCDHCGKAFISYPSLFGHLRVHNGEKPYEHKEYGKAFGTSSGVIEDRRSNTGQKRFDCDQCGKVFVSFSSLFAHLRTHTGEKPFKCYKCGKPFTSSACLRIHMRTHTEERLYQCKKCGKAFTKCSYLTKHLRTHAGEKPYECMKCGKAFTERSYLTKHLRRHSGEKPYECKKCGKAFTERSDLTKHLRRHTGDKPYEYKDCGKAFVVSSSLVDHLRTHTGYKPYKCNACEKAYSRSCVLTQHLKTHAAEKTSECNACGNSFRNSMCFHDRLKTLTKIKPYKCKDCGKAFTCHSDLTNHVRIHTGEKPYKCKECGKAFRTSSGRIQHLRTHMGEKPFECDQCGKAFASFSARIAHLKTH
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
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# Domain name Pos
1 KRAB 13..84
2 dec2h2 284..314
3 C2h2 348..370
4 C2h2 376..398
5 C2h2 404..426
6 C2h2 432..454
7 C2h2 488..510
8 C2h2 516..538
9 C2h2 544..566
10 C2h2 572..594
11 C2h2 600..622
12 dec2h2 628..650
13 C2h2 656..678
14 C2h2 712..734
15 C2h2 740..762
16 C2h2 768..790
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function DNA-binding transcription repressor activity, RNA polymerase II-specific
4 Molecular Function metal ion binding
5 Molecular Function RNA polymerase II transcription regulatory region sequence-specific DNA binding
6 Biological Process negative regulation of transcription by RNA polymerase II
7 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 LTR12C 552 **** 19.6 Weakly correlated
2 SVA_D 235 **** 15.2 Weakly correlated
3 SVA_F 176 **** 0.0 Weakly correlated
4 L1PA2 126 **** 15.2 Weakly correlated
5 L1PA3 94 **** 19.6 Weakly correlated
6 L1HS 82 **** 8.6 Weakly correlated
7 SVA_A 82 **** 19.6 Weakly correlated
8 L1PA4 62 * 19.6 Weakly correlated
9 L1PA5 57 * 19.6 Weakly correlated
10 SVA_B 57 **** 15.2 Weakly correlated
11 SVA_E 53 **** 0.0 Weakly correlated
12 AluY 50 n.s 74.0 Weakly correlated
13 SVA_C 48 **** 15.2 Weakly correlated
14 THE1B-int 40 **** 43.0 Highly correlated
15 MER52A 33 **** 74.0 Weakly correlated
16 LTR12D 30 **** 19.6 Weakly correlated
17 THE1C-int 27 **** 43.0 Highly correlated
18 THE1D-int 27 **** 28.9 Weakly correlated
19 L1PA6 26 n.s 28.9 Weakly correlated
20 MSTA-int 25 **** 43.0 Highly correlated
21 AluJb 24 n.s 74.0 Weakly correlated
22 AluSx1 24 n.s 74.0 Weakly correlated
23 LTR12E 23 **** 19.6 Weakly correlated
24 AluSx 22 n.s 74.0 Weakly correlated
25 AluSp 18 n.s 74.0 Weakly correlated
26 L1P1 18 *** 19.6 Weakly correlated
27 AluJr 14 n.s 74.0 Weakly correlated
28 AluSc8 14 n.s 74.0 Weakly correlated
29 L1P3 14 ** 74.0 Weakly correlated
30 L1PA7 14 n.s 74.0 Weakly correlated
31 L2a 14 n.s 99.0 Weakly correlated
32 AluJo 13 n.s 74.0 Weakly correlated
33 L1PA12 13 **** 74.0 Weakly correlated
34 MER52D 12 **** 74.0 Weakly correlated
35 AluYh7 10 **** 0.0 Weakly correlated
36 L1PA10 10 n.s 74.0 Weakly correlated
37 L1PA8A 10 n.s 74.0 Weakly correlated
38 LTR8B 10 **** 43.0 Highly correlated
39 MER52C 10 **** 74.0 Weakly correlated
40 AluSg 9 n.s 74.0 Weakly correlated
41 AluSz 9 n.s 74.0 Weakly correlated
42 FRAM 9 *** 74.0 Weakly correlated
43 MIRb 9 n.s 99.0 Weakly correlated
44 MIRc 9 n.s 99.0 Weakly correlated
45 AluSq2 7 n.s 74.0 Weakly correlated
46 AluSz6 7 n.s 74.0 Weakly correlated
47 L1MA8 7 n.s 87.0 Weakly correlated
48 MIR 7 n.s 99.0 Weakly correlated
49 MIR3 7 n.s 99.0 Weakly correlated
50 AluSx3 6 n.s 74.0 Weakly correlated
51 AluYj4 6 ** 0.0 Weakly correlated
52 L1PB1 6 n.s 74.0 Weakly correlated
53 L2b 6 n.s 99.0 Weakly correlated
54 L2c 6 n.s 99.0 Weakly correlated
55 AluYa5 5 n.s 15.2 Weakly correlated
56 L1M4 5 n.s 99.0 Weakly correlated
57 L1MEg 5 n.s 99.0 Weakly correlated
58 L2 5 n.s 99.0 Weakly correlated
59 MIR1_Amn 5 n.s 319.0 Weakly correlated
60 AluSc 4 n.s 74.0 Weakly correlated
61 AluSq10 4 ** 74.0 Weakly correlated
62 AluYm1 4 n.s 19.6 Weakly correlated
63 ERV3-16A3_I-int 4 n.s 99.0 Weakly correlated
64 L1M1 4 n.s 74.0 Weakly correlated
65 L1M4b 4 n.s 99.0 Weakly correlated
66 L1MB8 4 n.s 99.0 Weakly correlated
67 L1MDa 4 n.s 99.0 Weakly correlated
68 L1P2 4 n.s 28.9 Weakly correlated
69 L1PA11 4 n.s 74.0 Weakly correlated
70 L1PA8 4 n.s 74.0 Weakly correlated
71 LTR10A 4 **** 28.9 Weakly correlated
72 LTR12 4 * 28.9 Weakly correlated
73 MER21B 4 n.s 99.0 Weakly correlated
74 MER50 4 n.s 43.0 Highly correlated
75 AluSg4 3 n.s 74.0 Weakly correlated
76 AluSx4 3 n.s 74.0 Weakly correlated
77 L1M5 3 n.s 99.0 Weakly correlated
78 L1MC4 3 n.s 99.0 Weakly correlated
79 L1ME4a 3 n.s 99.0 Weakly correlated
80 L1MEc 3 n.s 99.0 Weakly correlated
81 L1MEd 3 n.s 99.0 Weakly correlated
82 L1MEf 3 n.s 99.0 Weakly correlated
83 L1P4 3 n.s 74.0 Weakly correlated
84 L1PA13 3 n.s 74.0 Weakly correlated
85 LTR10B1 3 **** 28.9 Weakly correlated
86 LTR10F 3 ** 28.9 Weakly correlated
87 LTR13 3 * 19.6 Weakly correlated
88 LTR41 3 * 99.0 Weakly correlated
89 LTR41B 3 ** 99.0 Weakly correlated
90 LTR50 3 n.s 99.0 Weakly correlated
91 MLT1E3 3 n.s 99.0 Weakly correlated
92 MSTB-int 3 n.s 43.0 Highly correlated
93 THE1A-int 3 n.s 43.0 Highly correlated
94 Alu 2 * 74.0 Weakly correlated
95 AluJr4 2 n.s 74.0 Weakly correlated
96 HERVIP10FH-int 2 n.s 28.9 Weakly correlated
97 HERVL18-int 2 n.s 43.0 Highly correlated
98 L1M2 2 n.s 99.0 Weakly correlated
99 L1M3b 2 n.s 99.0 Weakly correlated
100 L1M3e 2 n.s 99.0 Weakly correlated
101 L1MA6 2 n.s 87.0 Weakly correlated
102 L1MC5a 2 n.s 99.0 Weakly correlated
103 L1MD 2 n.s 99.0 Weakly correlated
104 L1MD2 2 n.s 99.0 Weakly correlated
105 L1MDb 2 n.s 99.0 Weakly correlated
106 L1ME2 2 n.s 99.0 Weakly correlated
107 L1PA15 2 n.s 74.0 Weakly correlated
108 L1PREC2 2 n.s 43.0 Highly correlated
109 L3 2 n.s 99.0 Weakly correlated
110 LTR12F 2 * 28.9 Weakly correlated
111 LTR12_ 2 * 28.9 Weakly correlated
112 LTR2752 2 * 43.0 Highly correlated
113 LTR28C 2 * 43.0 Highly correlated
114 LTR76 2 ** 74.0 Weakly correlated
115 MLT1F2 2 n.s 99.0 Weakly correlated
116 MLT2B4 2 n.s 99.0 Weakly correlated
117 MamGypLTR3 2 ** 99.0 Weakly correlated
118 AluSc5 1 n.s 74.0 Weakly correlated
119 AluSq 1 n.s 74.0 Weakly correlated
120 AluSq4 1 n.s 74.0 Weakly correlated
121 AluYb8 1 n.s 15.2 Weakly correlated
122 AluYh3 1 n.s 15.2 Weakly correlated
123 AluYh9 1 *** 15.2 Weakly correlated
124 AmnSINE1 1 n.s 319.0 Weakly correlated
125 ERVL-E-int 1 n.s 99.0 Weakly correlated
126 FLAM_A 1 n.s 74.0 Weakly correlated
127 FLAM_C 1 n.s 74.0 Weakly correlated
128 HAL1 1 n.s 99.0 Weakly correlated
129 HERVK-int 1 n.s 28.9 Weakly correlated
130 HERVK9-int 1 n.s 28.9 Weakly correlated
131 HERVL-int 1 n.s 74.0 Weakly correlated
132 HERVL74-int 1 n.s 99.0 Weakly correlated
133 L1M2c 1 n.s 87.0 Weakly correlated
134 L1M3 1 n.s 99.0 Weakly correlated
135 L1M3f 1 n.s 87.0 Weakly correlated
136 L1MA2 1 n.s 74.0 Weakly correlated
137 L1MA4A 1 n.s 87.0 Weakly correlated
138 L1MA5 1 n.s 87.0 Weakly correlated
139 L1MA9 1 n.s 99.0 Weakly correlated
140 L1MB5 1 n.s 99.0 Weakly correlated
141 L1MB7 1 n.s 99.0 Weakly correlated
142 L1MC 1 n.s 99.0 Weakly correlated
143 L1MC1 1 n.s 99.0 Weakly correlated
144 L1ME1 1 n.s 99.0 Weakly correlated
145 L1ME3E 1 n.s 99.0 Weakly correlated
146 L1MEi 1 n.s 99.0 Weakly correlated
147 L1P4a 1 n.s 74.0 Weakly correlated
148 L1P4b 1 n.s 74.0 Weakly correlated
149 L1PA14 1 n.s 74.0 Weakly correlated
150 L1PA16 1 n.s 74.0 Weakly correlated
151 L1PA17 1 n.s 74.0 Weakly correlated
152 L1PB2 1 n.s 74.0 Weakly correlated
153 L1PBb 1 n.s 74.0 Weakly correlated
154 LFSINE_Vert 1 n.s 319.0 Weakly correlated
155 LTR1 1 n.s 43.0 Highly correlated
156 LTR16E2 1 n.s 99.0 Weakly correlated
157 LTR17 1 n.s 28.9 Weakly correlated
158 LTR1A1 1 n.s 43.0 Highly correlated
159 LTR1A2 1 n.s 43.0 Highly correlated
160 LTR1F1 1 n.s 43.0 Highly correlated
161 LTR25 1 n.s 43.0 Highly correlated
162 LTR25-int 1 n.s 43.0 Highly correlated
163 LTR2B 1 n.s 19.6 Weakly correlated
164 LTR33 1 n.s 99.0 Weakly correlated
165 LTR49-int 1 n.s 74.0 Weakly correlated
166 LTR5_Hs 1 n.s 0.0 Weakly correlated
167 LTR9B 1 n.s 43.0 Highly correlated
168 MER41B 1 n.s 74.0 Weakly correlated
169 MER4B 1 n.s 74.0 Weakly correlated
170 MER4B-int 1 n.s 99.0 Weakly correlated
171 MER52-int 1 n.s 99.0 Weakly correlated
172 MER54A 1 n.s 87.0 Weakly correlated
173 MER57E3 1 * 74.0 Weakly correlated
174 MER61-int 1 n.s 43.0 Highly correlated
175 MER66A 1 * 43.0 Highly correlated
176 MER74B 1 n.s 99.0 Weakly correlated
177 MER77B 1 n.s 99.0 Weakly correlated
178 MER9a1 1 n.s 19.6 Weakly correlated
179 MLT1A0-int 1 n.s 99.0 Weakly correlated
180 MLT1D 1 n.s 99.0 Weakly correlated
181 MLT1E1A 1 n.s 99.0 Weakly correlated
182 MLT1G1-int 1 n.s 99.0 Weakly correlated
183 MLT1K 1 n.s 99.0 Weakly correlated
184 MLT1L 1 n.s 99.0 Weakly correlated
185 MSTA 1 n.s 43.0 Highly correlated
186 MSTB 1 n.s 43.0 Highly correlated
187 MSTB1-int 1 n.s 74.0 Weakly correlated
188 Plat_L3 1 n.s 99.0 Weakly correlated
189 THE1B 1 n.s 43.0 Highly correlated
190 THE1D 1 n.s 43.0 Highly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 LTR12C 67 **** 19.6 Weakly correlated
2 SVA_D 37 **** 15.2 Weakly correlated
3 L1PA2 36 * 15.2 Weakly correlated
4 SVA_F 29 **** 0.0 Weakly correlated
5 AluY 19 n.s 74.0 Weakly correlated
6 L1PA3 16 n.s 19.6 Weakly correlated
7 L1PA4 12 n.s 19.6 Weakly correlated
8 SVA_E 11 **** 0.0 Weakly correlated
9 L1PA5 9 n.s 19.6 Weakly correlated
10 AluSc8 8 n.s 74.0 Weakly correlated
11 AluSp 8 n.s 74.0 Weakly correlated
12 THE1C-int 7 n.s 43.0 Highly correlated
13 SVA_A 7 **** 19.6 Weakly correlated
14 SVA_B 6 *** 15.2 Weakly correlated
15 THE1D-int 5 n.s 28.9 Weakly correlated
16 AluSx1 5 n.s 74.0 Weakly correlated
17 THE1B-int 5 n.s 43.0 Highly correlated
18 AluSx 4 n.s 74.0 Weakly correlated
19 L1PA7 4 n.s 74.0 Weakly correlated
20 L1PA6 4 n.s 28.9 Weakly correlated
21 SVA_C 4 ** 15.2 Weakly correlated
22 AluSg 3 n.s 74.0 Weakly correlated
23 AluYm1 2 n.s 19.6 Weakly correlated
24 AluSz6 2 n.s 74.0 Weakly correlated
25 MER52A 2 n.s 74.0 Weakly correlated
26 AluSx3 2 n.s 74.0 Weakly correlated
27 L1HS 2 n.s 8.6 Weakly correlated
28 L1PA13 2 n.s 74.0 Weakly correlated
29 LTR2B 1 n.s 19.6 Weakly correlated
30 ERVL-E-int 1 n.s 99.0 Weakly correlated
31 LTR12F 1 n.s 28.9 Weakly correlated
32 LTR50 1 n.s 99.0 Weakly correlated
33 MER52D 1 n.s 74.0 Weakly correlated
34 Alu 1 n.s 74.0 Weakly correlated
35 AluJb 1 n.s 74.0 Weakly correlated
36 MER74B 1 n.s 99.0 Weakly correlated
37 MSTA-int 1 n.s 43.0 Highly correlated
38 AluJo 1 n.s 74.0 Weakly correlated
39 MER21B 1 n.s 99.0 Weakly correlated
40 LTR2752 1 n.s 43.0 Highly correlated
41 L1PREC2 1 n.s 43.0 Highly correlated
42 L1MA6 1 n.s 87.0 Weakly correlated
43 L1MA9 1 n.s 99.0 Weakly correlated
44 L1P3 1 n.s 74.0 Weakly correlated
45 L2a 1 n.s 99.0 Weakly correlated
46 AluYh3 1 n.s 15.2 Weakly correlated
47 L1M5 1 n.s 99.0 Weakly correlated
48 L1PA8A 1 n.s 74.0 Weakly correlated
49 AluSx4 1 n.s 74.0 Weakly correlated
50 AluYa5 1 n.s 15.2 Weakly correlated
51 L1MA2 1 n.s 74.0 Weakly correlated
52 AluSq10 1 n.s 74.0 Weakly correlated
53 AluSq2 1 n.s 74.0 Weakly correlated
54 AluSz 1 n.s 74.0 Weakly correlated
55 L1M4 1 n.s 99.0 Weakly correlated
56 L1ME4a 1 n.s 99.0 Weakly correlated
57 THE1A-int 1 n.s 43.0 Highly correlated
58 L2b 1 n.s 99.0 Weakly correlated
59 L1M3f 1 n.s 87.0 Weakly correlated
60 L1MA4A 1 n.s 87.0 Weakly correlated
61 LTR41 1 n.s 99.0 Weakly correlated
62 L1PA10 1 n.s 74.0 Weakly correlated
63 LTR25-int 1 n.s 43.0 Highly correlated
64 AluSq4 1 n.s 74.0 Weakly correlated
65 L1MA8 1 n.s 87.0 Weakly correlated
66 L1P1 1 n.s 19.6 Weakly correlated
67 L2c 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ALUSC8 74.0 Weakly correlated
2 ALUY 74.0 Weakly correlated
3 LTR12C 19.6 Weakly correlated
4 SVA_A 19.6 Weakly correlated
5 SVA_B 15.2 Weakly correlated
6 SVA_D 15.2 Weakly correlated
7 SVA_E 0.0 Weakly correlated
8 SVA_F 0.0 Weakly correlated