ZRdb KZFP & Repeats
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Human_ZNF554

  • Protein
    Zinc finger protein 554
  • Length
    538
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    Q86TJ5
  • NCBI_ID
    115196
Sequence:
MVTCAHLGRRARLPAAQPSACPGTCFSQEERMAAGYLPRWSQELVTFEDVSMDFSQEEWELLEPAQKNLYREVMLENYRNVVSLEALKNQCTDVGIKEGPLSPAQTSQVTSLSSWTGYLLFQPVASSHLEQREALWIEEKGTPQASCSDWMTVLRNQDSTYKKVALQEEPASGINMIKLIREDGGWKQLEDSHEDPQGLLSQKASLHVVAVPQEKATAWHGFGENGNLSPALVLSQGSSKGNHLCGSELDITSLASDSVLNHHQLGYADRRPCESNECGNAIRQNSHFIQHGGKMFVYLENGQSLNHGMALTIHNKINTAEKPFECHQCGKVFNRRHSLSEHQRIHTGEKPYECQECGRAFTHSSTLTRHLRTHTGEKPYGCGECGKAFNRISSLTQHQRIHTGEKPYKCEDCGKSFCQSSYLILHKRTHTGEKPYECSECGKAFSDRSSLNQHERTHTGENPYECKQCGRAFSQRSSLVRHERTHTGEKPYRCQECGKAFSQSSSLVTHQKTHSSQKTYKIIDCGKAFYQNRHLIGY
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 45..148
2 dec2h2 271..292
3 C2h2 324..346
4 C2h2 352..374
5 C2h2 380..402
6 C2h2 408..430
7 C2h2 436..458
8 C2h2 464..486
9 C2h2 492..514
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleolus
2 Cellular Component nucleoplasm
3 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
4 Molecular Function DNA-binding transcription repressor activity, RNA polymerase II-specific
5 Molecular Function metal ion binding
6 Molecular Function RNA polymerase II transcription regulatory region sequence-specific DNA binding
7 Biological Process negative regulation of transcription by RNA polymerase II
8 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MIRb 742 **** 99.0 Highly correlated
2 L2a 553 **** 99.0 Highly correlated
3 AluJb 460 **** 74.0 Weakly correlated
4 MIR 458 **** 99.0 Highly correlated
5 L2c 414 **** 99.0 Highly correlated
6 L2b 345 **** 99.0 Highly correlated
7 MIRc 334 **** 99.0 Highly correlated
8 MIR3 297 **** 99.0 Highly correlated
9 HAL1 294 **** 99.0 Highly correlated
10 AluJo 278 **** 74.0 Weakly correlated
11 AluJr 234 *** 74.0 Weakly correlated
12 AluSz 201 n.s 74.0 Weakly correlated
13 AluSx1 180 n.s 74.0 Weakly correlated
14 L2 180 ** 99.0 Highly correlated
15 AluSx 165 n.s 74.0 Weakly correlated
16 MLT1H 159 **** 99.0 Highly correlated
17 AluSz6 120 n.s 74.0 Weakly correlated
18 L3 116 *** 99.0 Highly correlated
19 MLT1K 115 **** 99.0 Highly correlated
20 MSTA 103 **** 43.0 Weakly correlated
21 AluY 96 n.s 74.0 Weakly correlated
22 MLT1C 91 **** 94.0 Weakly correlated
23 L1MB7 89 n.s 99.0 Highly correlated
24 AluSq2 84 n.s 74.0 Weakly correlated
25 L1M5 79 n.s 99.0 Highly correlated
26 MLT1J 77 **** 99.0 Highly correlated
27 LTR8 70 **** 43.0 Weakly correlated
28 AluJr4 66 *** 74.0 Weakly correlated
29 MamRTE1 65 **** 99.0 Highly correlated
30 L1ME1 61 n.s 99.0 Highly correlated
31 MLT1I 58 **** 99.0 Highly correlated
32 ERVL-E-int 56 *** 99.0 Highly correlated
33 FLAM_C 56 **** 74.0 Weakly correlated
34 L3b 56 **** 99.0 Highly correlated
35 L1MEc 55 n.s 99.0 Highly correlated
36 MLT1H2 54 **** 99.0 Highly correlated
37 AluSp 53 n.s 74.0 Weakly correlated
38 L1PB1 51 n.s 74.0 Weakly correlated
39 MLT1J2 51 **** 99.0 Highly correlated
40 L1ME3A 50 n.s 99.0 Highly correlated
41 MLT1B 50 n.s 99.0 Highly correlated
42 MSTB1 49 **** 74.0 Weakly correlated
43 AluSx3 48 n.s 74.0 Weakly correlated
44 L1M4 47 n.s 99.0 Highly correlated
45 L1MB8 45 n.s 99.0 Highly correlated
46 MIR1_Amn 43 **** 319.0 Weakly correlated
47 AluSg 42 n.s 74.0 Weakly correlated
48 MER11A 42 **** 28.9 Weakly correlated
49 MLT1F 41 **** 99.0 Highly correlated
50 L1MB3 40 n.s 99.0 Highly correlated
51 MLT1A0 40 n.s 99.0 Highly correlated
52 MLT1F2 40 **** 99.0 Highly correlated
53 MLT1L 40 *** 99.0 Highly correlated
54 ERV3-16A3_I-int 39 n.s 99.0 Highly correlated
55 ERVL-B4-int 39 ** 99.0 Highly correlated
56 FRAM 38 **** 74.0 Weakly correlated
57 L1MC4 37 n.s 99.0 Highly correlated
58 L1PA6 37 n.s 28.9 Weakly correlated
59 MLT1N2 37 **** 99.0 Highly correlated
60 THE1D 37 n.s 43.0 Weakly correlated
61 AluSc 36 n.s 74.0 Weakly correlated
62 L1ME4a 36 n.s 99.0 Highly correlated
63 LTR18A 36 **** 43.0 Weakly correlated
64 MLT1D 36 n.s 99.0 Highly correlated
65 MLT1G1 35 **** 99.0 Highly correlated
66 MSTB 35 * 43.0 Weakly correlated
67 AmnSINE1 34 **** 319.0 Weakly correlated
68 LTR33 34 ** 99.0 Highly correlated
69 L1MB5 33 n.s 99.0 Highly correlated
70 L1ME4b 33 n.s 99.0 Highly correlated
71 LTR13 33 **** 19.6 Weakly correlated
72 MLT1G3 33 **** 99.0 Highly correlated
73 MamSINE1 33 **** 99.0 Highly correlated
74 L1M1 32 n.s 74.0 Weakly correlated
75 L1MEg 32 n.s 99.0 Highly correlated
76 L1PBa 32 * 74.0 Weakly correlated
77 MLT1G 32 **** 99.0 Highly correlated
78 MLT1J1 32 **** 99.0 Highly correlated
79 L1MC5 31 n.s 99.0 Highly correlated
80 MER50 31 **** 43.0 Weakly correlated
81 AluSq 30 n.s 74.0 Weakly correlated
82 L1MC5a 30 n.s 99.0 Highly correlated
83 L1MD2 29 n.s 99.0 Highly correlated
84 AluSc8 28 n.s 74.0 Weakly correlated
85 FLAM_A 28 ** 74.0 Weakly correlated
86 L1MA9 28 n.s 99.0 Highly correlated
87 L1MEf 27 n.s 99.0 Highly correlated
88 L1PA7 27 n.s 74.0 Weakly correlated
89 MLT1O 27 **** 99.0 Highly correlated
90 MER21C 26 n.s 99.0 Highly correlated
91 MLT1F1 26 **** 99.0 Highly correlated
92 L1M4b 25 n.s 99.0 Highly correlated
93 L1ME3Cz 25 n.s 99.0 Highly correlated
94 L1ME3G 25 n.s 99.0 Highly correlated
95 L1MEd 25 n.s 99.0 Highly correlated
96 L1MC3 24 n.s 99.0 Highly correlated
97 HAL1ME 23 n.s 99.0 Highly correlated
98 L1MA3 23 n.s 74.0 Weakly correlated
99 L1MB4 23 n.s 99.0 Highly correlated
100 LTR8B 23 **** 43.0 Weakly correlated
101 MLT1E1A 23 *** 99.0 Highly correlated
102 MLT1H1 23 *** 99.0 Highly correlated
103 L1PA3 22 n.s 19.6 Weakly correlated
104 L4_A_Mam 22 * 99.0 Highly correlated
105 LFSINE_Vert 22 **** 319.0 Weakly correlated
106 LTR16C 22 n.s 99.0 Highly correlated
107 LTR50 22 **** 99.0 Highly correlated
108 L1ME3 21 n.s 99.0 Highly correlated
109 LTR41C 21 **** 99.0 Highly correlated
110 LTR67B 21 **** 99.0 Highly correlated
111 HERVL-int 20 n.s 74.0 Weakly correlated
112 L1MC4a 20 n.s 99.0 Highly correlated
113 Plat_L3 20 **** 99.0 Highly correlated
114 L1ME2 19 n.s 99.0 Highly correlated
115 LTR16A1 19 **** 99.0 Highly correlated
116 LTR76 19 **** 74.0 Weakly correlated
117 LTR78 18 * 99.0 Highly correlated
118 MSTA-int 18 n.s 43.0 Weakly correlated
119 LTR41 17 **** 99.0 Highly correlated
120 MER11B 17 **** 19.6 Weakly correlated
121 THE1B 17 n.s 43.0 Weakly correlated
122 THE1C 17 n.s 43.0 Weakly correlated
123 L1MA4 16 n.s 87.0 Weakly correlated
124 L1MA4A 16 n.s 87.0 Weakly correlated
125 L1MDa 16 n.s 99.0 Highly correlated
126 LTR12C 16 n.s 19.6 Weakly correlated
127 MamRep605 16 ** 99.0 Highly correlated
128 L1MA2 15 n.s 74.0 Weakly correlated
129 L1MC1 15 n.s 99.0 Highly correlated
130 L1MD3 15 n.s 99.0 Highly correlated
131 L1ME4c 15 n.s 99.0 Highly correlated
132 L1PBa1 15 ** 74.0 Weakly correlated
133 LTR33A 15 **** 99.0 Highly correlated
134 MER4-int 15 n.s 74.0 Weakly correlated
135 MER52A 15 n.s 74.0 Weakly correlated
136 L1M2 14 n.s 99.0 Highly correlated
137 L1MD1 14 n.s 99.0 Highly correlated
138 L1MEi 14 n.s 99.0 Highly correlated
139 MER68 14 *** 99.0 Highly correlated
140 L1PA2 13 n.s 15.2 Weakly correlated
141 L1PA5 13 n.s 19.6 Weakly correlated
142 MER57-int 13 n.s 87.0 Weakly correlated
143 MER77 13 *** 99.0 Highly correlated
144 MLT1A 13 n.s 99.0 Highly correlated
145 MLT1M 13 **** 99.0 Highly correlated
146 MLT2B4 13 n.s 99.0 Highly correlated
147 L1P2 12 n.s 28.9 Weakly correlated
148 L1PA4 12 n.s 19.6 Weakly correlated
149 L4_C_Mam 12 n.s 99.0 Highly correlated
150 LTR18B 12 **** 43.0 Weakly correlated
151 MER74A 12 ** 99.0 Highly correlated
152 MLT2F 12 ** 99.0 Highly correlated
153 MamGypLTR3a 12 **** 99.0 Highly correlated
154 AluSg7 11 n.s 74.0 Weakly correlated
155 AluSx4 11 n.s 74.0 Weakly correlated
156 L1M4a2 11 n.s 99.0 Highly correlated
157 L1MA5 11 n.s 87.0 Weakly correlated
158 L1MC2 11 n.s 99.0 Highly correlated
159 L1MEh 11 n.s 99.0 Highly correlated
160 LTR4 11 **** 28.9 Weakly correlated
161 LTR8A 11 * 43.0 Weakly correlated
162 MER41-int 11 n.s 74.0 Weakly correlated
163 MLT1E2 11 n.s 99.0 Highly correlated
164 MSTB2 11 ** 74.0 Weakly correlated
165 MamGypLTR3 11 **** 99.0 Highly correlated
166 Alu 10 **** 74.0 Weakly correlated
167 AluYc 10 n.s 74.0 Weakly correlated
168 HERVH-int 10 n.s 28.9 Weakly correlated
169 HERVK22-int 10 * 43.0 Weakly correlated
170 LTR88b 10 **** 99.0 Highly correlated
171 MER65C 10 **** 74.0 Weakly correlated
172 MER76 10 **** 99.0 Highly correlated
173 THE1B-int 10 n.s 43.0 Weakly correlated
174 THE1D-int 10 n.s 28.9 Weakly correlated
175 AluSc5 9 n.s 74.0 Weakly correlated
176 ERV3-16A3_LTR 9 *** 99.0 Highly correlated
177 FAM 9 n.s 87.0 Weakly correlated
178 HERVL40-int 9 * 99.0 Highly correlated
179 L1MB2 9 n.s 99.0 Highly correlated
180 L1MC 9 n.s 99.0 Highly correlated
181 L1MD 9 n.s 99.0 Highly correlated
182 L1PA15 9 n.s 74.0 Weakly correlated
183 L1PA15-16 9 n.s 74.0 Weakly correlated
184 L1PA16 9 n.s 74.0 Weakly correlated
185 LOR1-int 9 n.s 74.0 Weakly correlated
186 LTR40c 9 **** 99.0 Highly correlated
187 LTR41B 9 *** 99.0 Highly correlated
188 MER41A 9 n.s 74.0 Weakly correlated
189 MER41B 9 n.s 74.0 Weakly correlated
190 MER66B 9 * 43.0 Weakly correlated
191 MER74B 9 *** 99.0 Highly correlated
192 MSTD 9 n.s 74.0 Weakly correlated
193 HERV3-int 8 * 28.9 Weakly correlated
194 L1MA7 8 n.s 87.0 Weakly correlated
195 L1MCc 8 n.s 99.0 Highly correlated
196 L1PA14 8 n.s 74.0 Weakly correlated
197 L1PREC2 8 n.s 43.0 Weakly correlated
198 LTR10A 8 **** 28.9 Weakly correlated
199 LTR16A 8 n.s 99.0 Highly correlated
200 LTR16B1 8 * 99.0 Highly correlated
201 LTR26 8 *** 74.0 Weakly correlated
202 LTR33A_ 8 * 99.0 Highly correlated
203 MER21B 8 n.s 99.0 Highly correlated
204 MER4D 8 n.s 74.0 Weakly correlated
205 MER77B 8 * 99.0 Highly correlated
206 MLT2B1 8 n.s 99.0 Highly correlated
207 X6A_LINE 8 **** 99.0 Highly correlated
208 AluSg4 7 n.s 74.0 Weakly correlated
209 HERVL18-int 7 * 43.0 Weakly correlated
210 L1MCa 7 n.s 99.0 Highly correlated
211 L1ME2z 7 n.s 99.0 Highly correlated
212 L1ME3B 7 n.s 99.0 Highly correlated
213 L1ME3F 7 n.s 99.0 Highly correlated
214 L1PA13 7 n.s 74.0 Weakly correlated
215 L1PB3 7 n.s 74.0 Weakly correlated
216 LTR10F 7 *** 28.9 Weakly correlated
217 LTR16 7 n.s 99.0 Highly correlated
218 LTR16A2 7 n.s 99.0 Highly correlated
219 LTR25-int 7 n.s 43.0 Weakly correlated
220 LTR2752 7 *** 43.0 Weakly correlated
221 LTR53 7 *** 99.0 Highly correlated
222 LTR55 7 *** 99.0 Highly correlated
223 LTR61 7 **** 43.0 Weakly correlated
224 LTR83 7 *** 99.0 Highly correlated
225 MER101-int 7 n.s 74.0 Weakly correlated
226 MER4B-int 7 n.s 99.0 Highly correlated
227 MER57B1 7 ** 43.0 Weakly correlated
228 MER61C 7 **** 43.0 Weakly correlated
229 MLT2D 7 n.s 99.0 Highly correlated
230 THE1C-int 7 n.s 43.0 Weakly correlated
231 CR1_Mam 6 * 99.0 Highly correlated
232 ERVL-int 6 n.s 99.0 Highly correlated
233 HUERS-P3-int 6 n.s 43.0 Weakly correlated
234 L1M4a1 6 n.s 99.0 Highly correlated
235 L1MA5A 6 n.s 87.0 Weakly correlated
236 L1MB1 6 n.s 99.0 Highly correlated
237 L1ME5 6 n.s 99.0 Highly correlated
238 L1PA11 6 n.s 74.0 Weakly correlated
239 L1PB4 6 n.s 99.0 Highly correlated
240 L4_B_Mam 6 n.s 99.0 Highly correlated
241 LTR13_ 6 **** 28.9 Weakly correlated
242 LTR16B 6 ** 99.0 Highly correlated
243 LTR16B2 6 n.s 99.0 Highly correlated
244 LTR16E2 6 n.s 99.0 Highly correlated
245 LTR5_Hs 6 n.s 0.0 Weakly correlated
246 LTR72 6 **** 74.0 Weakly correlated
247 LTR79 6 n.s 99.0 Highly correlated
248 LTR81A 6 ** 99.0 Highly correlated
249 LTR84b 6 * 99.0 Highly correlated
250 MER49 6 n.s 43.0 Weakly correlated
251 MER52-int 6 n.s 99.0 Highly correlated
252 MER52D 6 n.s 74.0 Weakly correlated
253 MLT1E3 6 n.s 99.0 Highly correlated
254 MLT1J-int 6 n.s 99.0 Highly correlated
255 MSTA1 6 *** 74.0 Weakly correlated
256 AluYm1 5 n.s 19.6 Weakly correlated
257 HAL1M8 5 n.s 99.0 Highly correlated
258 HERV35I-int 5 n.s 43.0 Weakly correlated
259 HERVK-int 5 n.s 28.9 Weakly correlated
260 HUERS-P3b-int 5 n.s 43.0 Weakly correlated
261 L1M3a 5 n.s 99.0 Highly correlated
262 L1MDb 5 n.s 99.0 Highly correlated
263 L1ME3C 5 n.s 99.0 Highly correlated
264 L1ME3E 5 n.s 99.0 Highly correlated
265 L1P4 5 n.s 74.0 Weakly correlated
266 L1PA10 5 n.s 74.0 Weakly correlated
267 L2-3_Crp 5 n.s 431.0 Weakly correlated
268 LTR12 5 n.s 28.9 Weakly correlated
269 LTR14B 5 ** 28.9 Weakly correlated
270 LTR16D 5 * 99.0 Highly correlated
271 LTR37B 5 n.s 99.0 Highly correlated
272 LTR45B 5 ** 74.0 Weakly correlated
273 LTR49-int 5 n.s 74.0 Weakly correlated
274 LTR71A 5 **** 43.0 Weakly correlated
275 LTR75 5 *** 99.0 Highly correlated
276 LTR75B 5 **** 99.0 Highly correlated
277 LTR78B 5 n.s 99.0 Highly correlated
278 LTR88c 5 ** 99.0 Highly correlated
279 MER110A 5 ** 99.0 Highly correlated
280 MER39 5 n.s 74.0 Weakly correlated
281 MER54B 5 ** 87.0 Weakly correlated
282 MER65-int 5 n.s 87.0 Weakly correlated
283 MER89 5 n.s 99.0 Highly correlated
284 MLT1A0-int 5 n.s 99.0 Highly correlated
285 MamGypsy2-I 5 n.s 99.0 Highly correlated
286 X6B_LINE 5 *** 99.0 Highly correlated
287 AluSq10 4 n.s 74.0 Weakly correlated
288 AluYk11 4 ** 15.2 Weakly correlated
289 AmnSINE2 4 *** 319.0 Weakly correlated
290 CR1-3_Croc 4 * 319.0 Weakly correlated
291 HERVFH21-int 4 * 28.9 Weakly correlated
292 HUERS-P1-int 4 n.s 43.0 Weakly correlated
293 L1HS 4 n.s 8.6 Weakly correlated
294 L1M3 4 n.s 99.0 Highly correlated
295 L1M3c 4 n.s 99.0 Highly correlated
296 L1M4c 4 n.s 99.0 Highly correlated
297 L1M6 4 n.s 99.0 Highly correlated
298 L1MA6 4 n.s 87.0 Weakly correlated
299 L1MA8 4 n.s 87.0 Weakly correlated
300 L1ME3D 4 n.s 99.0 Highly correlated
301 L1PB2 4 n.s 74.0 Weakly correlated
302 L2-1_AMi 4 * 319.0 Weakly correlated
303 LTR104_Mam 4 n.s 99.0 Highly correlated
304 LTR10B2 4 **** 28.9 Weakly correlated
305 LTR16E1 4 n.s 99.0 Highly correlated
306 LTR18C 4 **** 43.0 Weakly correlated
307 LTR19A 4 * 43.0 Weakly correlated
308 LTR22B 4 *** 28.9 Weakly correlated
309 LTR24 4 ** 74.0 Weakly correlated
310 LTR33C 4 n.s 99.0 Highly correlated
311 LTR38A1 4 **** 74.0 Weakly correlated
312 LTR40a 4 n.s 99.0 Highly correlated
313 LTR57-int 4 * 74.0 Weakly correlated
314 LTR65 4 ** 99.0 Highly correlated
315 LTR71B 4 ** 43.0 Weakly correlated
316 LTR82A 4 n.s 99.0 Highly correlated
317 LTR85a 4 n.s 99.0 Highly correlated
318 LTR88a 4 * 99.0 Highly correlated
319 LTR9 4 n.s 43.0 Weakly correlated
320 MER11C 4 n.s 19.6 Weakly correlated
321 MER31-int 4 n.s 99.0 Highly correlated
322 MER4C 4 n.s 74.0 Weakly correlated
323 MER4CL34 4 n.s 43.0 Weakly correlated
324 MER50-int 4 n.s 43.0 Weakly correlated
325 MER52C 4 n.s 74.0 Weakly correlated
326 MER57A-int 4 n.s 43.0 Weakly correlated
327 MER57B2 4 n.s 43.0 Weakly correlated
328 MER66A 4 ** 43.0 Weakly correlated
329 MER70A 4 * 87.0 Weakly correlated
330 MER83 4 * 43.0 Weakly correlated
331 MLT2C1 4 n.s 99.0 Highly correlated
332 MLT2E 4 ** 99.0 Highly correlated
333 MSTC 4 n.s 74.0 Weakly correlated
334 MamGypLTR1a 4 n.s 99.0 Highly correlated
335 MamGypLTR1b 4 n.s 99.0 Highly correlated
336 MamRep1527 4 n.s 99.0 Highly correlated
337 SVA_A 4 n.s 19.6 Weakly correlated
338 X7A_LINE 4 ** 319.0 Weakly correlated
339 AluYa5 3 n.s 15.2 Weakly correlated
340 HAL1b 3 n.s 99.0 Highly correlated
341 HERV16-int 3 n.s 99.0 Highly correlated
342 HERV17-int 3 n.s 28.9 Weakly correlated
343 HERVS71-int 3 n.s 28.9 Weakly correlated
344 L1M3f 3 n.s 87.0 Weakly correlated
345 L1P1 3 n.s 19.6 Weakly correlated
346 L1P3 3 n.s 74.0 Weakly correlated
347 L1PA8 3 n.s 74.0 Weakly correlated
348 L1PA8A 3 n.s 74.0 Weakly correlated
349 LTR101_Mam 3 n.s 99.0 Highly correlated
350 LTR102_Mam 3 n.s 99.0 Highly correlated
351 LTR103_Mam 3 * 99.0 Highly correlated
352 LTR12E 3 * 19.6 Weakly correlated
353 LTR1C3 3 **** 43.0 Weakly correlated
354 LTR2 3 n.s 28.9 Weakly correlated
355 LTR22A 3 ** 43.0 Weakly correlated
356 LTR22C0 3 ** 28.9 Weakly correlated
357 LTR23 3 n.s 74.0 Weakly correlated
358 LTR25 3 * 43.0 Weakly correlated
359 LTR28 3 * 43.0 Weakly correlated
360 LTR35 3 *** 43.0 Weakly correlated
361 LTR40b 3 n.s 99.0 Highly correlated
362 LTR44 3 ** 74.0 Weakly correlated
363 LTR45C 3 n.s 99.0 Highly correlated
364 LTR53B 3 ** 99.0 Highly correlated
365 LTR64 3 * 74.0 Weakly correlated
366 LTR81 3 ** 99.0 Highly correlated
367 LTR82B 3 n.s 99.0 Highly correlated
368 MER21-int 3 n.s 99.0 Highly correlated
369 MER31B 3 n.s 99.0 Highly correlated
370 MER34A 3 n.s 99.0 Highly correlated
371 MER51-int 3 n.s 43.0 Weakly correlated
372 MER51A 3 n.s 43.0 Weakly correlated
373 MER54A 3 n.s 87.0 Weakly correlated
374 MER57C2 3 * 87.0 Weakly correlated
375 MER57F 3 * 74.0 Weakly correlated
376 MER61-int 3 n.s 43.0 Weakly correlated
377 MER61A 3 n.s 43.0 Weakly correlated
378 MER61D 3 * 43.0 Weakly correlated
379 MER65A 3 n.s 74.0 Weakly correlated
380 MER66-int 3 n.s 43.0 Weakly correlated
381 MER92B 3 n.s 99.0 Highly correlated
382 MLT1A-int 3 n.s 99.0 Highly correlated
383 MLT1A1 3 n.s 87.0 Weakly correlated
384 MLT2A1 3 n.s 74.0 Weakly correlated
385 MSTB-int 3 n.s 43.0 Weakly correlated
386 MamGyp-int 3 n.s 99.0 Highly correlated
387 Penelope1_Vert 3 * 319.0 Weakly correlated
388 AluSq4 2 n.s 74.0 Weakly correlated
389 AluYb8 2 n.s 15.2 Weakly correlated
390 AluYj4 2 n.s 0.0 Weakly correlated
391 AluYk3 2 n.s 19.6 Weakly correlated
392 CR1-16_AMi 2 * 319.0 Weakly correlated
393 CR1-L3A_Croc 2 ** 319.0 Weakly correlated
394 ERV24B_Prim-int 2 n.s 74.0 Weakly correlated
395 ERV24_Prim-int 2 n.s 74.0 Weakly correlated
396 HERV9N-int 2 n.s 19.6 Weakly correlated
397 HERVE-int 2 n.s 19.6 Weakly correlated
398 HERVIP10B3-int 2 n.s 28.9 Weakly correlated
399 HERVIP10FH-int 2 n.s 28.9 Weakly correlated
400 HERVK9-int 2 n.s 28.9 Weakly correlated
401 HERVL74-int 2 n.s 99.0 Highly correlated
402 HERVP71A-int 2 n.s 43.0 Weakly correlated
403 Harlequin-int 2 n.s 74.0 Weakly correlated
404 L1M3b 2 n.s 99.0 Highly correlated
405 L1MEg2 2 n.s 99.0 Highly correlated
406 L1PA12 2 n.s 74.0 Weakly correlated
407 L1PA17 2 n.s 74.0 Weakly correlated
408 L1PB 2 n.s 74.0 Weakly correlated
409 L5 2 n.s 99.0 Highly correlated
410 LTR06 2 ** 74.0 Weakly correlated
411 LTR106_Mam 2 n.s 99.0 Highly correlated
412 LTR10D 2 * 28.9 Weakly correlated
413 LTR10E 2 n.s 28.9 Weakly correlated
414 LTR12D 2 n.s 19.6 Weakly correlated
415 LTR15 2 n.s 28.9 Weakly correlated
416 LTR16D1 2 * 99.0 Highly correlated
417 LTR19-int 2 n.s 43.0 Weakly correlated
418 LTR19B 2 n.s 43.0 Weakly correlated
419 LTR1D 2 n.s 43.0 Weakly correlated
420 LTR27B 2 * 43.0 Weakly correlated
421 LTR2C 2 n.s 19.6 Weakly correlated
422 LTR32 2 n.s 43.0 Weakly correlated
423 LTR35A 2 ** 43.0 Weakly correlated
424 LTR37-int 2 n.s 99.0 Highly correlated
425 LTR37A 2 n.s 99.0 Highly correlated
426 LTR47A2 2 * 74.0 Weakly correlated
427 LTR48B 2 n.s 74.0 Weakly correlated
428 LTR54B 2 n.s 74.0 Weakly correlated
429 LTR62 2 n.s 74.0 Weakly correlated
430 LTR7 2 n.s 19.6 Weakly correlated
431 LTR72B 2 * 74.0 Weakly correlated
432 LTR81B 2 n.s 99.0 Highly correlated
433 LTR85c 2 n.s 99.0 Highly correlated
434 LTR89 2 n.s 99.0 Highly correlated
435 LTR90A 2 * 99.0 Highly correlated
436 LTR9B 2 n.s 43.0 Weakly correlated
437 LTR9D 2 n.s 43.0 Weakly correlated
438 MER101 2 n.s 74.0 Weakly correlated
439 MER31A 2 n.s 87.0 Weakly correlated
440 MER34-int 2 n.s 99.0 Highly correlated
441 MER34B 2 n.s 87.0 Weakly correlated
442 MER41G 2 * 74.0 Weakly correlated
443 MER4A1 2 n.s 74.0 Weakly correlated
444 MER4B 2 n.s 74.0 Weakly correlated
445 MER4D1 2 n.s 74.0 Weakly correlated
446 MER57A1 2 n.s 43.0 Weakly correlated
447 MER57C1 2 * 74.0 Weakly correlated
448 MER57D 2 n.s 87.0 Weakly correlated
449 MER65D 2 n.s 87.0 Weakly correlated
450 MER66C 2 n.s 43.0 Weakly correlated
451 MER67A 2 n.s 99.0 Highly correlated
452 MER67B 2 n.s 99.0 Highly correlated
453 MER67C 2 n.s 99.0 Highly correlated
454 MER68-int 2 n.s 99.0 Highly correlated
455 MER72 2 n.s 43.0 Weakly correlated
456 MER83B-int 2 n.s 99.0 Highly correlated
457 MER90 2 n.s 99.0 Highly correlated
458 MER90a 2 n.s 99.0 Highly correlated
459 MER9a3 2 n.s 28.9 Weakly correlated
460 MLT1B-int 2 n.s 99.0 Highly correlated
461 MLT1C-int 2 n.s 94.0 Weakly correlated
462 MLT1E1 2 n.s 99.0 Highly correlated
463 MLT1H2-int 2 n.s 99.0 Highly correlated
464 MLT1K-int 2 ** 99.0 Highly correlated
465 MLT2B3 2 n.s 99.0 Highly correlated
466 MLT2B5 2 n.s 87.0 Weakly correlated
467 MLT2C2 2 n.s 99.0 Highly correlated
468 MSTD-int 2 n.s 74.0 Weakly correlated
469 MamGypLTR1c 2 n.s 99.0 Highly correlated
470 MamGypLTR1d 2 n.s 99.0 Highly correlated
471 MamGypLTR2b 2 n.s 99.0 Highly correlated
472 MamRep1151 2 n.s 99.0 Highly correlated
473 Mam_R4 2 n.s 99.0 Highly correlated
474 PABL_A-int 2 n.s 74.0 Weakly correlated
475 PrimLTR79 2 ** 74.0 Weakly correlated
476 THE1A 2 n.s 43.0 Weakly correlated
477 X2_LINE 2 ** 319.0 Weakly correlated
478 AluYa8 1 n.s 15.2 Weakly correlated
479 AluYc3 1 n.s 74.0 Weakly correlated
480 AluYg6 1 n.s 15.2 Weakly correlated
481 AluYh3 1 n.s 15.2 Weakly correlated
482 AluYh3a3 1 n.s 15.2 Weakly correlated
483 AluYh7 1 * 0.0 Weakly correlated
484 AluYi6 1 n.s 15.2 Weakly correlated
485 ERVL47-int 1 n.s 74.0 Weakly correlated
486 HERV15-int 1 n.s 28.9 Weakly correlated
487 HERV4_I-int 1 n.s 43.0 Weakly correlated
488 HERV9NC-int 1 n.s 19.6 Weakly correlated
489 HERVH48-int 1 n.s 28.9 Weakly correlated
490 HERVIP10F-int 1 n.s 28.9 Weakly correlated
491 HERVK11-int 1 n.s 28.9 Weakly correlated
492 HERVK3-int 1 n.s 28.9 Weakly correlated
493 HERVKC4-int 1 n.s 28.9 Weakly correlated
494 HERVL66-int 1 n.s 43.0 Weakly correlated
495 L1M 1 n.s 74.0 Weakly correlated
496 L1M2a 1 n.s 87.0 Weakly correlated
497 L1M3e 1 n.s 99.0 Highly correlated
498 L1M6B 1 n.s 99.0 Highly correlated
499 L1M8 1 n.s 99.0 Highly correlated
500 L1MA1 1 n.s 74.0 Weakly correlated
501 L1MA10 1 n.s 99.0 Highly correlated
502 L1MCb 1 n.s 99.0 Highly correlated
503 L1MEa 1 n.s 99.0 Highly correlated
504 L1MEb 1 n.s 99.0 Highly correlated
505 L1MEj 1 n.s 99.0 Highly correlated
506 L1PBb 1 n.s 74.0 Weakly correlated
507 L2-1_Crp 1 ** 319.0 Weakly correlated
508 LTR103b_Mam 1 n.s 99.0 Highly correlated
509 LTR105_Mam 1 n.s 99.0 Highly correlated
510 LTR10C 1 n.s 28.9 Weakly correlated
511 LTR10G 1 n.s 28.9 Weakly correlated
512 LTR12_ 1 n.s 28.9 Weakly correlated
513 LTR13A 1 n.s 28.9 Weakly correlated
514 LTR16D2 1 n.s 99.0 Highly correlated
515 LTR17 1 n.s 28.9 Weakly correlated
516 LTR1D1 1 n.s 43.0 Weakly correlated
517 LTR1E 1 n.s 43.0 Weakly correlated
518 LTR22B1 1 n.s 28.9 Weakly correlated
519 LTR22C2 1 * 28.9 Weakly correlated
520 LTR22E 1 n.s 28.9 Weakly correlated
521 LTR26C 1 n.s 0.0 Weakly correlated
522 LTR27 1 n.s 43.0 Weakly correlated
523 LTR27C 1 n.s 43.0 Weakly correlated
524 LTR27E 1 n.s 43.0 Weakly correlated
525 LTR28C 1 n.s 43.0 Weakly correlated
526 LTR33B 1 n.s 99.0 Highly correlated
527 LTR36 1 n.s 74.0 Weakly correlated
528 LTR38-int 1 n.s 74.0 Weakly correlated
529 LTR38B 1 n.s 74.0 Weakly correlated
530 LTR39 1 n.s 43.0 Weakly correlated
531 LTR3B 1 * 28.9 Weakly correlated
532 LTR40A1 1 n.s 99.0 Highly correlated
533 LTR43 1 n.s 74.0 Weakly correlated
534 LTR46 1 n.s 43.0 Weakly correlated
535 LTR47B3 1 * 74.0 Weakly correlated
536 LTR47B4 1 * 74.0 Weakly correlated
537 LTR48 1 n.s 74.0 Weakly correlated
538 LTR51 1 n.s 74.0 Weakly correlated
539 LTR52 1 n.s 99.0 Highly correlated
540 LTR54 1 n.s 74.0 Weakly correlated
541 LTR56 1 n.s 74.0 Weakly correlated
542 LTR57 1 n.s 74.0 Weakly correlated
543 LTR5B 1 n.s 28.9 Weakly correlated
544 LTR60 1 ** 43.0 Weakly correlated
545 LTR60B 1 n.s 74.0 Weakly correlated
546 LTR69 1 n.s 99.0 Highly correlated
547 LTR6A 1 n.s 28.9 Weakly correlated
548 LTR70 1 n.s 74.0 Weakly correlated
549 LTR7B 1 n.s 28.9 Weakly correlated
550 LTR7Y 1 n.s 8.6 Weakly correlated
551 LTR80A 1 n.s 99.0 Highly correlated
552 LTR80B 1 n.s 99.0 Highly correlated
553 LTR81C 1 n.s 99.0 Highly correlated
554 LTR84a 1 n.s 99.0 Highly correlated
555 LTR85b 1 n.s 99.0 Highly correlated
556 LTR86A1 1 n.s 99.0 Highly correlated
557 LTR86A2 1 n.s 99.0 Highly correlated
558 LTR86B1 1 n.s 99.0 Highly correlated
559 LTR87 1 n.s 99.0 Highly correlated
560 LTR91 1 n.s 99.0 Highly correlated
561 MER110 1 n.s 99.0 Highly correlated
562 MER110-int 1 n.s 99.0 Highly correlated
563 MER129 1 * 319.0 Weakly correlated
564 MER21A 1 n.s 74.0 Weakly correlated
565 MER34 1 n.s 87.0 Weakly correlated
566 MER34D 1 n.s 74.0 Weakly correlated
567 MER39B 1 n.s 74.0 Weakly correlated
568 MER41D 1 n.s 74.0 Weakly correlated
569 MER4D0 1 n.s 74.0 Weakly correlated
570 MER4E 1 n.s 74.0 Weakly correlated
571 MER4E1 1 n.s 74.0 Weakly correlated
572 MER50B 1 n.s 43.0 Weakly correlated
573 MER50C 1 * 43.0 Weakly correlated
574 MER51C 1 n.s 43.0 Weakly correlated
575 MER57E1 1 n.s 87.0 Weakly correlated
576 MER61B 1 n.s 43.0 Weakly correlated
577 MER61E 1 n.s 43.0 Weakly correlated
578 MER65B 1 n.s 74.0 Weakly correlated
579 MER66D 1 n.s 43.0 Weakly correlated
580 MER68B 1 n.s 99.0 Highly correlated
581 MER70B 1 n.s 87.0 Weakly correlated
582 MER72B 1 n.s 43.0 Weakly correlated
583 MER84-int 1 n.s 74.0 Weakly correlated
584 MER89-int 1 n.s 99.0 Highly correlated
585 MLT1A1-int 1 n.s 87.0 Weakly correlated
586 MLT1E1A-int 1 n.s 99.0 Highly correlated
587 MLT1E3-int 1 * 99.0 Highly correlated
588 MLT1F-int 1 n.s 99.0 Highly correlated
589 MLT1F1-int 1 n.s 99.0 Highly correlated
590 MLT1G-int 1 n.s 99.0 Highly correlated
591 MLT1G1-int 1 n.s 99.0 Highly correlated
592 MLT1H-int 1 n.s 99.0 Highly correlated
593 MLT1H1-int 1 n.s 99.0 Highly correlated
594 MLT1J1-int 1 n.s 99.0 Highly correlated
595 MLT1J2-int 1 n.s 99.0 Highly correlated
596 MLT2A2 1 n.s 74.0 Weakly correlated
597 MLT2B2 1 n.s 99.0 Highly correlated
598 MSTB1-int 1 n.s 74.0 Weakly correlated
599 MSTC-int 1 n.s 74.0 Weakly correlated
600 MamGypLTR2c 1 n.s 99.0 Highly correlated
601 MamGypsy2-LTR 1 n.s 99.0 Highly correlated
602 PABL_B 1 n.s 43.0 Weakly correlated
603 PABL_B-int 1 n.s 74.0 Weakly correlated
604 PRIMA4-int 1 n.s 74.0 Weakly correlated
605 PRIMA41-int 1 n.s 74.0 Weakly correlated
606 SVA_B 1 n.s 15.2 Weakly correlated
607 SVA_C 1 n.s 15.2 Weakly correlated
608 SVA_F 1 n.s 0.0 Weakly correlated
609 THE1A-int 1 n.s 43.0 Weakly correlated
610 X7B_LINE 1 n.s 319.0 Weakly correlated
611 X7C_LINE 1 n.s 319.0 Weakly correlated
612 X9_LINE 1 n.s 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluJb 140 n.s 74.0 Weakly correlated
2 MIRb 93 n.s 99.0 Highly correlated
3 AluJo 85 n.s 74.0 Weakly correlated
4 L2c 72 n.s 99.0 Highly correlated
5 L2a 70 n.s 99.0 Highly correlated
6 AluJr 66 n.s 74.0 Weakly correlated
7 MIR3 51 n.s 99.0 Highly correlated
8 L2b 49 n.s 99.0 Highly correlated
9 MIR 48 n.s 99.0 Highly correlated
10 MIRc 41 n.s 99.0 Highly correlated
11 MLT1H 40 ** 99.0 Highly correlated
12 AluSz 38 n.s 74.0 Weakly correlated
13 AluSx 32 n.s 74.0 Weakly correlated
14 L2 32 n.s 99.0 Highly correlated
15 AluSx1 30 n.s 74.0 Weakly correlated
16 HAL1 25 n.s 99.0 Highly correlated
17 LTR18A 25 **** 43.0 Weakly correlated
18 AluSz6 25 n.s 74.0 Weakly correlated
19 L3 25 n.s 99.0 Highly correlated
20 LTR8 25 ** 43.0 Weakly correlated
21 MLT1K 24 n.s 99.0 Highly correlated
22 FLAM_C 19 n.s 74.0 Weakly correlated
23 MLT1G 19 *** 99.0 Highly correlated
24 ERV3-16A3_I-int 16 n.s 99.0 Highly correlated
25 L1PB1 16 n.s 74.0 Weakly correlated
26 ERVL-E-int 16 n.s 99.0 Highly correlated
27 MLT1G1 16 * 99.0 Highly correlated
28 MLT1J 15 n.s 99.0 Highly correlated
29 ERVL-B4-int 15 n.s 99.0 Highly correlated
30 AluSq2 15 n.s 74.0 Weakly correlated
31 L1MB7 14 n.s 99.0 Highly correlated
32 L3b 14 n.s 99.0 Highly correlated
33 MLT1I 14 n.s 99.0 Highly correlated
34 MLT1F 14 n.s 99.0 Highly correlated
35 MamSINE1 13 ** 99.0 Highly correlated
36 MLT1F1 12 n.s 99.0 Highly correlated
37 MLT1J2 12 n.s 99.0 Highly correlated
38 AmnSINE1 12 **** 319.0 Weakly correlated
39 L1PBa 12 n.s 74.0 Weakly correlated
40 AluJr4 12 n.s 74.0 Weakly correlated
41 MIR1_Amn 11 n.s 319.0 Weakly correlated
42 MLT1H2 11 n.s 99.0 Highly correlated
43 LTR8B 10 n.s 43.0 Weakly correlated
44 FRAM 10 n.s 74.0 Weakly correlated
45 MLT1L 10 n.s 99.0 Highly correlated
46 MamRTE1 10 n.s 99.0 Highly correlated
47 L1PBa1 9 n.s 74.0 Weakly correlated
48 MER68 9 * 99.0 Highly correlated
49 MLT1N2 9 n.s 99.0 Highly correlated
50 LFSINE_Vert 8 ** 319.0 Weakly correlated
51 HERVL-int 8 n.s 74.0 Weakly correlated
52 L1M5 8 n.s 99.0 Highly correlated
53 LTR16A1 8 n.s 99.0 Highly correlated
54 MER21C 8 n.s 99.0 Highly correlated
55 AluSx3 8 n.s 74.0 Weakly correlated
56 MLT1O 8 n.s 99.0 Highly correlated
57 L1M4b 7 n.s 99.0 Highly correlated
58 L4_A_Mam 7 n.s 99.0 Highly correlated
59 AluSc 7 n.s 74.0 Weakly correlated
60 L1MB8 7 n.s 99.0 Highly correlated
61 LTR10A 7 **** 28.9 Weakly correlated
62 LTR78 7 n.s 99.0 Highly correlated
63 L1ME3A 7 n.s 99.0 Highly correlated
64 MLT1H1 7 n.s 99.0 Highly correlated
65 L1ME1 7 n.s 99.0 Highly correlated
66 LTR10F 7 *** 28.9 Weakly correlated
67 MLT1G3 7 n.s 99.0 Highly correlated
68 MLT1J1 7 n.s 99.0 Highly correlated
69 L1MB3 6 n.s 99.0 Highly correlated
70 MLT1C 6 n.s 94.0 Weakly correlated
71 L1MC3 6 n.s 99.0 Highly correlated
72 LTR18B 6 *** 43.0 Weakly correlated
73 MER77 6 n.s 99.0 Highly correlated
74 AluSp 6 n.s 74.0 Weakly correlated
75 MLT1F2 5 n.s 99.0 Highly correlated
76 AluSg 5 n.s 74.0 Weakly correlated
77 MER77B 5 n.s 99.0 Highly correlated
78 AluSq 5 n.s 74.0 Weakly correlated
79 L1MB5 5 n.s 99.0 Highly correlated
80 L1MD1 5 n.s 99.0 Highly correlated
81 L1MEg 5 n.s 99.0 Highly correlated
82 LTR13 5 n.s 19.6 Weakly correlated
83 L1MC5 5 n.s 99.0 Highly correlated
84 L1ME4b 5 n.s 99.0 Highly correlated
85 MLT1D 5 n.s 99.0 Highly correlated
86 LTR67B 4 n.s 99.0 Highly correlated
87 MSTB1 4 n.s 74.0 Weakly correlated
88 MLT1B 4 n.s 99.0 Highly correlated
89 L1MD2 4 n.s 99.0 Highly correlated
90 LTR26 4 n.s 74.0 Weakly correlated
91 MSTB2 4 n.s 74.0 Weakly correlated
92 L1MA3 4 n.s 74.0 Weakly correlated
93 L1MEh 4 n.s 99.0 Highly correlated
94 LTR72 4 *** 74.0 Weakly correlated
95 LTR33 4 n.s 99.0 Highly correlated
96 HERVL40-int 4 n.s 99.0 Highly correlated
97 L1M1 4 n.s 74.0 Weakly correlated
98 MamRep605 3 n.s 99.0 Highly correlated
99 L1MC2 3 n.s 99.0 Highly correlated
100 LTR16 3 n.s 99.0 Highly correlated
101 THE1B 3 n.s 43.0 Weakly correlated
102 L1MDa 3 n.s 99.0 Highly correlated
103 LTR16D 3 n.s 99.0 Highly correlated
104 MER89 3 n.s 99.0 Highly correlated
105 MLT1A0 3 n.s 99.0 Highly correlated
106 MSTA 3 n.s 43.0 Weakly correlated
107 THE1D 3 n.s 43.0 Weakly correlated
108 AluY 3 n.s 74.0 Weakly correlated
109 L1ME4a 3 n.s 99.0 Highly correlated
110 LTR33A 3 n.s 99.0 Highly correlated
111 LTR16C 3 n.s 99.0 Highly correlated
112 MSTB 3 n.s 43.0 Weakly correlated
113 LTR16A 3 n.s 99.0 Highly correlated
114 CR1_Mam 3 n.s 99.0 Highly correlated
115 L1ME3Cz 3 n.s 99.0 Highly correlated
116 LTR8A 3 n.s 43.0 Weakly correlated
117 MLT1E1A 3 n.s 99.0 Highly correlated
118 MLT1J-int 3 n.s 99.0 Highly correlated
119 L1MD3 3 n.s 99.0 Highly correlated
120 LTR18C 3 **** 43.0 Weakly correlated
121 L1MA4 2 n.s 87.0 Weakly correlated
122 L1ME3G 2 n.s 99.0 Highly correlated
123 LTR16A2 2 n.s 99.0 Highly correlated
124 LTR64 2 n.s 74.0 Weakly correlated
125 MER4C 2 n.s 74.0 Weakly correlated
126 AluSg7 2 n.s 74.0 Weakly correlated
127 L1ME2 2 n.s 99.0 Highly correlated
128 L4_C_Mam 2 n.s 99.0 Highly correlated
129 LTR50 2 n.s 99.0 Highly correlated
130 LTR83 2 n.s 99.0 Highly correlated
131 MER41A 2 n.s 74.0 Weakly correlated
132 MER57B1 2 n.s 43.0 Weakly correlated
133 MER76 2 n.s 99.0 Highly correlated
134 MLT1A 2 n.s 99.0 Highly correlated
135 MamGypLTR3a 2 n.s 99.0 Highly correlated
136 L1M3a 2 n.s 99.0 Highly correlated
137 L1PA11 2 n.s 74.0 Weakly correlated
138 MER21B 2 n.s 99.0 Highly correlated
139 MER70A 2 n.s 87.0 Weakly correlated
140 MLT2F 2 n.s 99.0 Highly correlated
141 AluSc8 2 n.s 74.0 Weakly correlated
142 L1MA2 2 n.s 74.0 Weakly correlated
143 LTR25 2 n.s 43.0 Weakly correlated
144 LTR40c 2 n.s 99.0 Highly correlated
145 MER21-int 2 n.s 99.0 Highly correlated
146 MER50 2 n.s 43.0 Weakly correlated
147 MER57F 2 n.s 74.0 Weakly correlated
148 L1MA5 2 n.s 87.0 Weakly correlated
149 L1MB4 2 n.s 99.0 Highly correlated
150 L1MC4 2 n.s 99.0 Highly correlated
151 L1ME3E 2 n.s 99.0 Highly correlated
152 L1PA8A 2 n.s 74.0 Weakly correlated
153 L1PB3 2 n.s 74.0 Weakly correlated
154 THE1C 2 n.s 43.0 Weakly correlated
155 ERVL-int 2 n.s 99.0 Highly correlated
156 HERVK22-int 2 n.s 43.0 Weakly correlated
157 L1MC5a 2 n.s 99.0 Highly correlated
158 L1MEi 2 n.s 99.0 Highly correlated
159 L1PA6 2 n.s 28.9 Weakly correlated
160 LTR16E1 2 n.s 99.0 Highly correlated
161 Plat_L3 2 n.s 99.0 Highly correlated
162 L1ME3B 2 n.s 99.0 Highly correlated
163 L1ME5 2 n.s 99.0 Highly correlated
164 MER57-int 2 n.s 87.0 Weakly correlated
165 AluSg4 1 n.s 74.0 Weakly correlated
166 HAL1ME 1 n.s 99.0 Highly correlated
167 L1M4a2 1 n.s 99.0 Highly correlated
168 L1PA15-16 1 n.s 74.0 Weakly correlated
169 LTR41 1 n.s 99.0 Highly correlated
170 LTR45B 1 n.s 74.0 Weakly correlated
171 LTR53 1 n.s 99.0 Highly correlated
172 LTR57 1 n.s 74.0 Weakly correlated
173 LTR90A 1 n.s 99.0 Highly correlated
174 MER110A 1 n.s 99.0 Highly correlated
175 MER41D 1 n.s 74.0 Weakly correlated
176 MER4B-int 1 n.s 99.0 Highly correlated
177 MER57C2 1 n.s 87.0 Weakly correlated
178 MER67A 1 n.s 99.0 Highly correlated
179 MER89-int 1 n.s 99.0 Highly correlated
180 Mam_R4 1 n.s 99.0 Highly correlated
181 AluYi6 1 n.s 15.2 Weakly correlated
182 HERVS71-int 1 n.s 28.9 Weakly correlated
183 L1MA6 1 n.s 87.0 Weakly correlated
184 L1MB1 1 n.s 99.0 Highly correlated
185 L2-1_Crp 1 ** 319.0 Weakly correlated
186 LTR106_Mam 1 n.s 99.0 Highly correlated
187 LTR12C 1 n.s 19.6 Weakly correlated
188 LTR16B 1 n.s 99.0 Highly correlated
189 LTR37-int 1 n.s 99.0 Highly correlated
190 LTR3B 1 * 28.9 Weakly correlated
191 LTR44 1 n.s 74.0 Weakly correlated
192 LTR57-int 1 n.s 74.0 Weakly correlated
193 LTR80A 1 n.s 99.0 Highly correlated
194 LTR81A 1 n.s 99.0 Highly correlated
195 MER41-int 1 n.s 74.0 Weakly correlated
196 MER41B 1 n.s 74.0 Weakly correlated
197 MLT1A1-int 1 n.s 87.0 Weakly correlated
198 MLT1C-int 1 n.s 94.0 Weakly correlated
199 HERVE-int 1 n.s 19.6 Weakly correlated
200 L1MC1 1 n.s 99.0 Highly correlated
201 L1MDb 1 n.s 99.0 Highly correlated
202 L1PA5 1 n.s 19.6 Weakly correlated
203 LTR101_Mam 1 n.s 99.0 Highly correlated
204 LTR24 1 n.s 74.0 Weakly correlated
205 LTR40b 1 n.s 99.0 Highly correlated
206 LTR5_Hs 1 n.s 0.0 Weakly correlated
207 LTR60B 1 n.s 74.0 Weakly correlated
208 LTR81 1 n.s 99.0 Highly correlated
209 MER4CL34 1 n.s 43.0 Weakly correlated
210 MER65C 1 n.s 74.0 Weakly correlated
211 MER72B 1 n.s 43.0 Weakly correlated
212 MER74B 1 n.s 99.0 Highly correlated
213 ERV3-16A3_LTR 1 n.s 99.0 Highly correlated
214 L1M2a 1 n.s 87.0 Weakly correlated
215 L1MC4a 1 n.s 99.0 Highly correlated
216 L1MEc 1 n.s 99.0 Highly correlated
217 L1P2 1 n.s 28.9 Weakly correlated
218 L1PREC2 1 n.s 43.0 Weakly correlated
219 LTR16B1 1 n.s 99.0 Highly correlated
220 LTR23 1 n.s 74.0 Weakly correlated
221 LTR28 1 n.s 43.0 Weakly correlated
222 LTR85c 1 n.s 99.0 Highly correlated
223 MER66-int 1 n.s 43.0 Weakly correlated
224 MLT1A0-int 1 n.s 99.0 Highly correlated
225 MLT2B4 1 n.s 99.0 Highly correlated
226 MLT2C1 1 n.s 99.0 Highly correlated
227 MamGypLTR1a 1 n.s 99.0 Highly correlated
228 Penelope1_Vert 1 n.s 319.0 Weakly correlated
229 X6A_LINE 1 n.s 99.0 Highly correlated
230 AluYb8 1 n.s 15.2 Weakly correlated
231 AluYk11 1 n.s 15.2 Weakly correlated
232 HERVK3-int 1 n.s 28.9 Weakly correlated
233 HERVKC4-int 1 n.s 28.9 Weakly correlated
234 L1M4a1 1 n.s 99.0 Highly correlated
235 L1MCa 1 n.s 99.0 Highly correlated
236 L1MEd 1 n.s 99.0 Highly correlated
237 LTR13_ 1 n.s 28.9 Weakly correlated
238 LTR16D2 1 n.s 99.0 Highly correlated
239 LTR36 1 n.s 74.0 Weakly correlated
240 MER74A 1 n.s 99.0 Highly correlated
241 MLT1B-int 1 n.s 99.0 Highly correlated
242 MLT2B1 1 n.s 99.0 Highly correlated
243 MSTD-int 1 n.s 74.0 Weakly correlated
244 MamGypLTR1c 1 n.s 99.0 Highly correlated
245 THE1C-int 1 n.s 43.0 Weakly correlated
246 HERV15-int 1 n.s 28.9 Weakly correlated
247 HERVK-int 1 n.s 28.9 Weakly correlated
248 HERVK11-int 1 n.s 28.9 Weakly correlated
249 L1M3b 1 n.s 99.0 Highly correlated
250 L5 1 n.s 99.0 Highly correlated
251 LTR13A 1 n.s 28.9 Weakly correlated
252 LTR4 1 n.s 28.9 Weakly correlated
253 LTR7Y 1 n.s 8.6 Weakly correlated
254 MER39 1 n.s 74.0 Weakly correlated
255 MER54B 1 n.s 87.0 Weakly correlated
256 MER83B-int 1 n.s 99.0 Highly correlated
257 MER92B 1 n.s 99.0 Highly correlated
258 Alu 1 n.s 74.0 Weakly correlated
259 AluSq10 1 n.s 74.0 Weakly correlated
260 HERV3-int 1 n.s 28.9 Weakly correlated
261 HERVIP10FH-int 1 n.s 28.9 Weakly correlated
262 LTR33A_ 1 n.s 99.0 Highly correlated
263 LTR41B 1 n.s 99.0 Highly correlated
264 LTR82B 1 n.s 99.0 Highly correlated
265 MER49 1 n.s 43.0 Weakly correlated
266 MER54A 1 n.s 87.0 Weakly correlated
267 MER57E1 1 n.s 87.0 Weakly correlated
268 MER61-int 1 n.s 43.0 Weakly correlated
269 MLT1E1A-int 1 n.s 99.0 Highly correlated
270 MLT1E3-int 1 * 99.0 Highly correlated
271 MLT2B5 1 n.s 87.0 Weakly correlated
272 AluYa5 1 n.s 15.2 Weakly correlated
273 AmnSINE2 1 n.s 319.0 Weakly correlated
274 ERV24_Prim-int 1 n.s 74.0 Weakly correlated
275 HERV16-int 1 n.s 99.0 Highly correlated
276 L1M4 1 n.s 99.0 Highly correlated
277 L1MA9 1 n.s 99.0 Highly correlated
278 L1ME3 1 n.s 99.0 Highly correlated
279 L1ME4c 1 n.s 99.0 Highly correlated
280 L1MEg2 1 n.s 99.0 Highly correlated
281 L1PA15 1 n.s 74.0 Weakly correlated
282 L1PA7 1 n.s 74.0 Weakly correlated
283 LTR16B2 1 n.s 99.0 Highly correlated
284 LTR41C 1 n.s 99.0 Highly correlated
285 LTR71A 1 n.s 43.0 Weakly correlated
286 MER41G 1 n.s 74.0 Weakly correlated
287 MER50-int 1 n.s 43.0 Weakly correlated
288 MER52D 1 n.s 74.0 Weakly correlated
289 MER65A 1 n.s 74.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ALUJB 74.0 Weakly correlated
2 ALUJO 74.0 Weakly correlated
3 ALUJR 74.0 Weakly correlated
4 ALUJR4 74.0 Weakly correlated
5 ALUSC 74.0 Weakly correlated
6 ALUSQ2 74.0 Weakly correlated
7 ALUSX 74.0 Weakly correlated
8 ALUSX1 74.0 Weakly correlated
9 ALUSX3 74.0 Weakly correlated
10 ALUSZ 74.0 Weakly correlated
11 ALUSZ6 74.0 Weakly correlated
12 AMNSINE1 319.0 Weakly correlated
13 ERV3-16A3_I-INT 99.0 Highly correlated
14 ERVL-B4-INT 99.0 Highly correlated
15 ERVL-E-INT 99.0 Highly correlated
16 FRAM 74.0 Weakly correlated
17 HAL1 99.0 Highly correlated
18 HERVL-INT 74.0 Weakly correlated
19 L1M4B 99.0 Highly correlated
20 L1M5 99.0 Highly correlated
21 L1MB3 99.0 Highly correlated
22 L1MB7 99.0 Highly correlated
23 L1MB8 99.0 Highly correlated
24 L1MC3 99.0 Highly correlated
25 L1ME1 99.0 Highly correlated
26 L1ME3A 99.0 Highly correlated
27 L1PB1 74.0 Weakly correlated
28 L1PBA 74.0 Weakly correlated
29 L1PBA1 74.0 Weakly correlated
30 L2 99.0 Highly correlated
31 L2C 99.0 Highly correlated
32 L3 99.0 Highly correlated
33 L3B 99.0 Highly correlated
34 L4_A_MAM 99.0 Highly correlated
35 LFSINE_VERT 319.0 Weakly correlated
36 LTR10A 28.9 Weakly correlated
37 LTR10F 28.9 Weakly correlated
38 LTR16A1 99.0 Highly correlated
39 LTR18A 43.0 Weakly correlated
40 LTR8 43.0 Weakly correlated
41 LTR8B 43.0 Weakly correlated
42 MER68 99.0 Highly correlated
43 MER77 99.0 Highly correlated
44 MIR 99.0 Highly correlated
45 MIR1_AMN 319.0 Weakly correlated
46 MIR3 99.0 Highly correlated
47 MIRC 99.0 Highly correlated
48 MLT1C 94.0 Weakly correlated
49 MLT1F 99.0 Highly correlated
50 MLT1F1 99.0 Highly correlated
51 MLT1G 99.0 Highly correlated
52 MLT1G1 99.0 Highly correlated
53 MLT1G3 99.0 Highly correlated
54 MLT1H1 99.0 Highly correlated
55 MLT1H2 99.0 Highly correlated
56 MLT1J1 99.0 Highly correlated
57 MLT1J2 99.0 Highly correlated
58 MLT1K 99.0 Highly correlated
59 MLT1L 99.0 Highly correlated
60 MAMRTE1 99.0 Highly correlated
61 MAMSINE1 99.0 Highly correlated