ZRdb KZFP & Repeats
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Human_ZNF549

  • Protein
    Zinc finger protein 549
  • Length
    640
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    87.0 Mya
  • Time of Changing in binding specificity
    87.0 Mya
  • Uniprot_ID
    Q6P9A3
  • NCBI_ID
    256051
Sequence:
MAEAALVITPQIPMVTEEFVKPSQGHVTFEDIAVYFSQEEWGLLDEAQRCLYHDVMLENFSLMASVGCLHGIEAEEAPSEQTLSAQGVSQARTPKLGPSIPNAHSCEMCILVMKDILYLSEHQGTLPWQKPYTSVASGKWFSFGSNLQQHQNQDSGEKHIRKEESSALLLNSCKIPLSDNLFPCKDVEKDFPTILGLLQHQTTHSRQEYAHRSRETFQQRRYKCEQVFNEKVHVTEHQRVHTGEKAYKRREYGKSLNSKYLFVEHQRTHNAEKPYVCNICGKSFLHKQTLVGHQQRIHTRERSYVCIECGKSLSSKYSLVEHQRTHNGEKPYVCNVCGKSFRHKQTFVGHQQRIHTGERPYVCMECGKSFIHSYDRIRHQRVHTGEGAYQCSECGKSFIYKQSLLDHHRIHTGERPYECKECGKAFIHKKRLLEHQRIHTGEKPYVCIICGKSFIRSSDYMRHQRIHTGERAYECSDCGKAFISKQTLLKHHKIHTRERPYECSECGKGFYLEVKLLQHQRIHTREQLCECNECGKVFSHQKRLLEHQKVHTGEKPCECSECGKCFRHRTSLIQHQKVHSGERPYNCTACEKAFIYKNKLVEHQRIHTGEKPYECGKCGKAFNKRYSLVRHQKVHITEEP
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 27..140
2 dec2h2 217..241
3 dec2h2 247..269
4 C2h2 275..298
5 C2h2 304..326
6 C2h2 332..355
7 C2h2 361..383
8 C2h2 389..411
9 C2h2 417..439
10 C2h2 445..467
11 C2h2 473..495
12 C2h2 501..523
13 C2h2 529..551
14 C2h2 557..579
15 C2h2 585..607
16 C2h2 613..635
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MER57D 245 **** 87.0 Highly correlated
2 MER57E1 227 **** 87.0 Highly correlated
3 LTR54B 150 **** 74.0 Weakly correlated
4 MER57B1 128 **** 43.0 Weakly correlated
5 MIRb 127 *** 99.0 Moderately correlated
6 MER57A1 106 **** 43.0 Weakly correlated
7 L2a 95 n.s 99.0 Moderately correlated
8 MIR 93 * 99.0 Moderately correlated
9 L2c 89 n.s 99.0 Moderately correlated
10 MER57C2 87 **** 87.0 Highly correlated
11 L2b 68 ** 99.0 Moderately correlated
12 MER57B2 68 **** 43.0 Weakly correlated
13 MIRc 67 **** 99.0 Moderately correlated
14 MER57C1 62 **** 74.0 Weakly correlated
15 AluJb 59 n.s 74.0 Weakly correlated
16 MER57F 56 **** 74.0 Weakly correlated
17 AluSx1 52 n.s 74.0 Weakly correlated
18 MIR3 45 *** 99.0 Moderately correlated
19 L2 42 n.s 99.0 Moderately correlated
20 AluSx 39 n.s 74.0 Weakly correlated
21 AluJr 35 n.s 74.0 Weakly correlated
22 L1MEc 35 * 99.0 Moderately correlated
23 MLT1A0 35 **** 99.0 Moderately correlated
24 LTR54 34 **** 74.0 Weakly correlated
25 MER57-int 30 **** 87.0 Highly correlated
26 MER57E2 30 **** 87.0 Highly correlated
27 LTR18A 27 **** 43.0 Weakly correlated
28 MER41-int 27 **** 74.0 Weakly correlated
29 L1M4 25 n.s 99.0 Moderately correlated
30 MLT1A 25 **** 99.0 Moderately correlated
31 AluY 24 n.s 74.0 Weakly correlated
32 AluSz 23 n.s 74.0 Weakly correlated
33 MLT1H 23 **** 99.0 Moderately correlated
34 AluJo 22 n.s 74.0 Weakly correlated
35 L3 22 n.s 99.0 Moderately correlated
36 MER50 21 **** 43.0 Weakly correlated
37 ERVL-B4-int 20 **** 99.0 Moderately correlated
38 L1M4b 20 **** 99.0 Moderately correlated
39 MER52A 20 **** 74.0 Weakly correlated
40 MLT1J2 20 **** 99.0 Moderately correlated
41 L1MEd 19 n.s 99.0 Moderately correlated
42 MLT1D 19 n.s 99.0 Moderately correlated
43 MLT1K 19 ** 99.0 Moderately correlated
44 HAL1 18 n.s 99.0 Moderately correlated
45 L1M5 18 n.s 99.0 Moderately correlated
46 L1MEf 18 n.s 99.0 Moderately correlated
47 MER57A-int 18 **** 43.0 Weakly correlated
48 MLT1J 18 ** 99.0 Moderately correlated
49 AluSc 17 n.s 74.0 Weakly correlated
50 AluSq2 17 n.s 74.0 Weakly correlated
51 L1MEg 17 n.s 99.0 Moderately correlated
52 THE1B-int 17 n.s 43.0 Weakly correlated
53 LTR76 16 **** 74.0 Weakly correlated
54 LTR8B 16 **** 43.0 Weakly correlated
55 MLT1C 16 n.s 94.0 Moderately correlated
56 AluSz6 15 n.s 74.0 Weakly correlated
57 MLT1A1 15 *** 87.0 Highly correlated
58 MLT1L 15 ** 99.0 Moderately correlated
59 MSTB1 15 **** 74.0 Weakly correlated
60 MER52C 14 **** 74.0 Weakly correlated
61 MLT1B 14 n.s 99.0 Moderately correlated
62 ERVL-E-int 13 n.s 99.0 Moderately correlated
63 L1ME1 13 n.s 99.0 Moderately correlated
64 MSTA-int 13 * 43.0 Weakly correlated
65 THE1D-int 13 ** 28.9 Weakly correlated
66 AluJr4 12 n.s 74.0 Weakly correlated
67 HERVL-int 12 n.s 74.0 Weakly correlated
68 L1MC4 12 n.s 99.0 Moderately correlated
69 L1PA5 12 n.s 19.6 Weakly correlated
70 LTR12C 12 n.s 19.6 Weakly correlated
71 L1MB7 11 n.s 99.0 Moderately correlated
72 L1ME3A 11 n.s 99.0 Moderately correlated
73 L1PB1 11 n.s 74.0 Weakly correlated
74 LTR10A 11 **** 28.9 Weakly correlated
75 LTR26 11 **** 74.0 Weakly correlated
76 LTR33 11 * 99.0 Moderately correlated
77 LTR50 11 **** 99.0 Moderately correlated
78 LTR67B 11 **** 99.0 Moderately correlated
79 LTR8 11 ** 43.0 Weakly correlated
80 MLT1I 11 * 99.0 Moderately correlated
81 AluSc8 10 n.s 74.0 Weakly correlated
82 L1ME4a 10 n.s 99.0 Moderately correlated
83 L1ME4b 10 n.s 99.0 Moderately correlated
84 LTR18B 10 **** 43.0 Weakly correlated
85 LTR18C 10 **** 43.0 Weakly correlated
86 MER34B-int 10 **** 99.0 Moderately correlated
87 MER4-int 10 ** 74.0 Weakly correlated
88 MIR1_Amn 10 *** 319.0 Weakly correlated
89 AluSx3 9 n.s 74.0 Weakly correlated
90 AmnSINE1 9 **** 319.0 Weakly correlated
91 FLAM_A 9 * 74.0 Weakly correlated
92 FLAM_C 9 n.s 74.0 Weakly correlated
93 L1MDa 9 n.s 99.0 Moderately correlated
94 LTR4 9 **** 28.9 Weakly correlated
95 MLT1F1 9 *** 99.0 Moderately correlated
96 MSTB 9 n.s 43.0 Weakly correlated
97 AluSg 8 n.s 74.0 Weakly correlated
98 L1M1 8 n.s 74.0 Weakly correlated
99 L1MB5 8 n.s 99.0 Moderately correlated
100 L1MB8 8 n.s 99.0 Moderately correlated
101 L1MC4a 8 n.s 99.0 Moderately correlated
102 L1ME2z 8 n.s 99.0 Moderately correlated
103 LTR13 8 **** 19.6 Weakly correlated
104 LTR41B 8 **** 99.0 Moderately correlated
105 MER65C 8 **** 74.0 Weakly correlated
106 MER72 8 **** 43.0 Weakly correlated
107 MLT1F 8 * 99.0 Moderately correlated
108 MLT1G 8 *** 99.0 Moderately correlated
109 MLT1G3 8 *** 99.0 Moderately correlated
110 MLT1N2 8 ** 99.0 Moderately correlated
111 MamRTE1 8 * 99.0 Moderately correlated
112 THE1B 8 n.s 43.0 Weakly correlated
113 THE1C-int 8 n.s 43.0 Weakly correlated
114 THE1D 8 n.s 43.0 Weakly correlated
115 AluSp 7 n.s 74.0 Weakly correlated
116 HUERS-P3-int 7 *** 43.0 Weakly correlated
117 L1MC5 7 n.s 99.0 Moderately correlated
118 LTR16A 7 * 99.0 Moderately correlated
119 LTR25-int 7 *** 43.0 Weakly correlated
120 LTR78 7 * 99.0 Moderately correlated
121 MER21C 7 n.s 99.0 Moderately correlated
122 MLT1G1 7 * 99.0 Moderately correlated
123 MLT1J1 7 ** 99.0 Moderately correlated
124 AluSq 6 n.s 74.0 Weakly correlated
125 L1MA4 6 n.s 87.0 Highly correlated
126 L1MA7 6 n.s 87.0 Highly correlated
127 L1MD1 6 n.s 99.0 Moderately correlated
128 L1ME2 6 n.s 99.0 Moderately correlated
129 L1PA10 6 n.s 74.0 Weakly correlated
130 L1PB3 6 n.s 74.0 Weakly correlated
131 L3b 6 n.s 99.0 Moderately correlated
132 LOR1-int 6 ** 74.0 Weakly correlated
133 LTR16A1 6 ** 99.0 Moderately correlated
134 LTR16B1 6 *** 99.0 Moderately correlated
135 LTR19A 6 **** 43.0 Weakly correlated
136 LTR1A2 6 *** 43.0 Weakly correlated
137 LTR31 6 **** 74.0 Weakly correlated
138 MER21B 6 n.s 99.0 Moderately correlated
139 MER4D 6 *** 74.0 Weakly correlated
140 MER50-int 6 *** 43.0 Weakly correlated
141 MER66-int 6 *** 43.0 Weakly correlated
142 MLT1E1A 6 * 99.0 Moderately correlated
143 L1M3f 5 ** 87.0 Highly correlated
144 L1M4a1 5 n.s 99.0 Moderately correlated
145 L1MB3 5 n.s 99.0 Moderately correlated
146 L1MC1 5 n.s 99.0 Moderately correlated
147 L1MC5a 5 n.s 99.0 Moderately correlated
148 L1ME4c 5 n.s 99.0 Moderately correlated
149 L1MEj 5 * 99.0 Moderately correlated
150 L1P3 5 n.s 74.0 Weakly correlated
151 L4_A_Mam 5 n.s 99.0 Moderately correlated
152 LTR41 5 *** 99.0 Moderately correlated
153 MER31A 5 ** 87.0 Highly correlated
154 MER39 5 n.s 74.0 Weakly correlated
155 MER4B-int 5 * 99.0 Moderately correlated
156 MER52D 5 ** 74.0 Weakly correlated
157 MER57E3 5 **** 74.0 Weakly correlated
158 MER67C 5 ** 99.0 Moderately correlated
159 MER89 5 ** 99.0 Moderately correlated
160 MLT1H1 5 n.s 99.0 Moderately correlated
161 MSTA 5 n.s 43.0 Weakly correlated
162 PABL_A-int 5 *** 74.0 Weakly correlated
163 AluYa5 4 n.s 15.2 Weakly correlated
164 ERV3-16A3_I-int 4 n.s 99.0 Moderately correlated
165 FRAM 4 n.s 74.0 Weakly correlated
166 HAL1ME 4 n.s 99.0 Moderately correlated
167 HERV3-int 4 ** 28.9 Weakly correlated
168 HERV35I-int 4 ** 43.0 Weakly correlated
169 L1M4a2 4 n.s 99.0 Moderately correlated
170 L1M4c 4 n.s 99.0 Moderately correlated
171 L1MA2 4 n.s 74.0 Weakly correlated
172 L1MA3 4 n.s 74.0 Weakly correlated
173 L1MA4A 4 n.s 87.0 Highly correlated
174 L1MA5 4 n.s 87.0 Highly correlated
175 L1MA8 4 n.s 87.0 Highly correlated
176 L1MC 4 n.s 99.0 Moderately correlated
177 L1MC3 4 n.s 99.0 Moderately correlated
178 L1MCa 4 n.s 99.0 Moderately correlated
179 L1MD2 4 n.s 99.0 Moderately correlated
180 L1ME3B 4 n.s 99.0 Moderately correlated
181 L1ME3Cz 4 n.s 99.0 Moderately correlated
182 L1ME3E 4 n.s 99.0 Moderately correlated
183 L1ME3G 4 n.s 99.0 Moderately correlated
184 L1MEi 4 n.s 99.0 Moderately correlated
185 L1P4 4 n.s 74.0 Weakly correlated
186 L1PA17 4 n.s 74.0 Weakly correlated
187 L1PA2 4 n.s 15.2 Weakly correlated
188 L1PA6 4 n.s 28.9 Weakly correlated
189 L1PBa 4 n.s 74.0 Weakly correlated
190 L4_B_Mam 4 * 99.0 Moderately correlated
191 LTR16 4 n.s 99.0 Moderately correlated
192 LTR19-int 4 *** 43.0 Weakly correlated
193 LTR22A 4 **** 43.0 Weakly correlated
194 LTR47A 4 *** 74.0 Weakly correlated
195 MER68 4 * 99.0 Moderately correlated
196 MLT1E2 4 n.s 99.0 Moderately correlated
197 MLT1F2 4 n.s 99.0 Moderately correlated
198 MLT1O 4 n.s 99.0 Moderately correlated
199 MamGypsy2-I 4 * 99.0 Moderately correlated
200 MamSINE1 4 * 99.0 Moderately correlated
201 Plat_L3 4 * 99.0 Moderately correlated
202 Alu 3 ** 74.0 Weakly correlated
203 HAL1M8 3 n.s 99.0 Moderately correlated
204 HERVL18-int 3 * 43.0 Weakly correlated
205 HERVL66-int 3 *** 43.0 Weakly correlated
206 L1M3 3 n.s 99.0 Moderately correlated
207 L1MA9 3 n.s 99.0 Moderately correlated
208 L1MB1 3 n.s 99.0 Moderately correlated
209 L1MB2 3 n.s 99.0 Moderately correlated
210 L1MC2 3 n.s 99.0 Moderately correlated
211 L1MD 3 n.s 99.0 Moderately correlated
212 L1P1 3 n.s 19.6 Weakly correlated
213 L1PA11 3 n.s 74.0 Weakly correlated
214 L1PA13 3 n.s 74.0 Weakly correlated
215 L1PA16 3 n.s 74.0 Weakly correlated
216 L1PA7 3 n.s 74.0 Weakly correlated
217 L1PREC2 3 n.s 43.0 Weakly correlated
218 L4_C_Mam 3 n.s 99.0 Moderately correlated
219 LTR16A2 3 * 99.0 Moderately correlated
220 LTR16C 3 n.s 99.0 Moderately correlated
221 LTR16E2 3 n.s 99.0 Moderately correlated
222 LTR25 3 *** 43.0 Weakly correlated
223 LTR27E 3 *** 43.0 Weakly correlated
224 LTR40a 3 n.s 99.0 Moderately correlated
225 LTR41C 3 ** 99.0 Moderately correlated
226 LTR78B 3 n.s 99.0 Moderately correlated
227 LTR79 3 n.s 99.0 Moderately correlated
228 MER101-int 3 n.s 74.0 Weakly correlated
229 MER11A 3 n.s 28.9 Weakly correlated
230 MER31B 3 * 99.0 Moderately correlated
231 MER4CL34 3 * 43.0 Weakly correlated
232 MER51A 3 * 43.0 Weakly correlated
233 MER52-int 3 n.s 99.0 Moderately correlated
234 MER61-int 3 n.s 43.0 Weakly correlated
235 MER66C 3 ** 43.0 Weakly correlated
236 MER70A 3 ** 87.0 Highly correlated
237 MER74C 3 **** 99.0 Moderately correlated
238 MER76 3 ** 99.0 Moderately correlated
239 MLT1E1 3 * 99.0 Moderately correlated
240 MLT1J-int 3 * 99.0 Moderately correlated
241 MLT1M 3 * 99.0 Moderately correlated
242 MLT2B1 3 n.s 99.0 Moderately correlated
243 MLT2B4 3 n.s 99.0 Moderately correlated
244 MamRep605 3 n.s 99.0 Moderately correlated
245 THE1A-int 3 n.s 43.0 Weakly correlated
246 THE1C 3 n.s 43.0 Weakly correlated
247 AluSq10 2 n.s 74.0 Weakly correlated
248 AluSx4 2 n.s 74.0 Weakly correlated
249 AluYb8 2 n.s 15.2 Weakly correlated
250 AluYh9 2 **** 15.2 Weakly correlated
251 AluYj4 2 n.s 0.0 Weakly correlated
252 AluYm1 2 n.s 19.6 Weakly correlated
253 AmnSINE2 2 *** 319.0 Weakly correlated
254 HERVH-int 2 n.s 28.9 Weakly correlated
255 HERVIP10F-int 2 n.s 28.9 Weakly correlated
256 HERVIP10FH-int 2 n.s 28.9 Weakly correlated
257 HERVK11-int 2 n.s 28.9 Weakly correlated
258 HERVL40-int 2 n.s 99.0 Moderately correlated
259 HUERS-P3b-int 2 n.s 43.0 Weakly correlated
260 L1M2 2 n.s 99.0 Moderately correlated
261 L1M2a 2 n.s 87.0 Highly correlated
262 L1MA1 2 n.s 74.0 Weakly correlated
263 L1MB4 2 n.s 99.0 Moderately correlated
264 L1MD3 2 n.s 99.0 Moderately correlated
265 L1ME3C 2 n.s 99.0 Moderately correlated
266 L1ME3D 2 n.s 99.0 Moderately correlated
267 L1ME3F 2 n.s 99.0 Moderately correlated
268 L1MEb 2 n.s 99.0 Moderately correlated
269 L1PA15 2 n.s 74.0 Weakly correlated
270 L1PA15-16 2 n.s 74.0 Weakly correlated
271 L1PA3 2 n.s 19.6 Weakly correlated
272 L1PA4 2 n.s 19.6 Weakly correlated
273 L1PB4 2 n.s 99.0 Moderately correlated
274 L5 2 ** 99.0 Moderately correlated
275 LFSINE_Vert 2 * 319.0 Weakly correlated
276 LTR06 2 **** 74.0 Weakly correlated
277 LTR16B2 2 n.s 99.0 Moderately correlated
278 LTR16E1 2 n.s 99.0 Moderately correlated
279 LTR2 2 n.s 28.9 Weakly correlated
280 LTR26C 2 ** 0.0 Weakly correlated
281 LTR33A 2 n.s 99.0 Moderately correlated
282 LTR33A_ 2 n.s 99.0 Moderately correlated
283 LTR35A 2 *** 43.0 Weakly correlated
284 LTR40A1 2 ** 99.0 Moderately correlated
285 LTR45C 2 ** 99.0 Moderately correlated
286 LTR57 2 ** 74.0 Weakly correlated
287 LTR81A 2 * 99.0 Moderately correlated
288 LTR85c 2 * 99.0 Moderately correlated
289 LTR88b 2 * 99.0 Moderately correlated
290 MER21A 2 n.s 74.0 Weakly correlated
291 MER31-int 2 n.s 99.0 Moderately correlated
292 MER34A 2 n.s 99.0 Moderately correlated
293 MER39B 2 n.s 74.0 Weakly correlated
294 MER49 2 n.s 43.0 Weakly correlated
295 MER51-int 2 n.s 43.0 Weakly correlated
296 MER61A 2 * 43.0 Weakly correlated
297 MER77 2 n.s 99.0 Moderately correlated
298 MER9a3 2 * 28.9 Weakly correlated
299 MLT1E 2 * 99.0 Moderately correlated
300 MLT1H-int 2 n.s 99.0 Moderately correlated
301 MLT1H2 2 n.s 99.0 Moderately correlated
302 MLT2D 2 n.s 99.0 Moderately correlated
303 MLT2F 2 n.s 99.0 Moderately correlated
304 MSTA1 2 * 74.0 Weakly correlated
305 MSTB-int 2 n.s 43.0 Weakly correlated
306 MSTB1-int 2 * 74.0 Weakly correlated
307 MamGypLTR3a 2 * 99.0 Moderately correlated
308 PRIMA41-int 2 n.s 74.0 Weakly correlated
309 SVA_D 2 n.s 15.2 Weakly correlated
310 AluSg4 1 n.s 74.0 Weakly correlated
311 AluSg7 1 n.s 74.0 Weakly correlated
312 AluYc 1 n.s 74.0 Weakly correlated
313 AluYc3 1 n.s 74.0 Weakly correlated
314 AluYh3 1 n.s 15.2 Weakly correlated
315 AluYh3a3 1 * 15.2 Weakly correlated
316 CR1-3_Croc 1 n.s 319.0 Weakly correlated
317 CR1_Mam 1 n.s 99.0 Moderately correlated
318 ERV24B_Prim-int 1 n.s 74.0 Weakly correlated
319 ERVL-int 1 n.s 99.0 Moderately correlated
320 FAM 1 n.s 87.0 Highly correlated
321 HAL1b 1 n.s 99.0 Moderately correlated
322 HERV16-int 1 n.s 99.0 Moderately correlated
323 HERV4_I-int 1 n.s 43.0 Weakly correlated
324 HERV9N-int 1 n.s 19.6 Weakly correlated
325 HERVE-int 1 n.s 19.6 Weakly correlated
326 HERVK11D-int 1 * 19.6 Weakly correlated
327 HERVK14C-int 1 * 28.9 Weakly correlated
328 HERVK22-int 1 n.s 43.0 Weakly correlated
329 HERVK9-int 1 n.s 28.9 Weakly correlated
330 HERVL74-int 1 n.s 99.0 Moderately correlated
331 HERVS71-int 1 n.s 28.9 Weakly correlated
332 HUERS-P1-int 1 n.s 43.0 Weakly correlated
333 L1M3c 1 n.s 99.0 Moderately correlated
334 L1M3de 1 n.s 99.0 Moderately correlated
335 L1M3e 1 n.s 99.0 Moderately correlated
336 L1M8 1 n.s 99.0 Moderately correlated
337 L1MA5A 1 n.s 87.0 Highly correlated
338 L1MCc 1 n.s 99.0 Moderately correlated
339 L1MDb 1 n.s 99.0 Moderately correlated
340 L1ME3 1 n.s 99.0 Moderately correlated
341 L1ME5 1 n.s 99.0 Moderately correlated
342 L1P2 1 n.s 28.9 Weakly correlated
343 L1P4a 1 n.s 74.0 Weakly correlated
344 L1PBb 1 n.s 74.0 Weakly correlated
345 LOR1a 1 n.s 74.0 Weakly correlated
346 LOR1b 1 n.s 74.0 Weakly correlated
347 LTR101_Mam 1 n.s 99.0 Moderately correlated
348 LTR104_Mam 1 n.s 99.0 Moderately correlated
349 LTR10B1 1 * 28.9 Weakly correlated
350 LTR10F 1 n.s 28.9 Weakly correlated
351 LTR12E 1 * 19.6 Weakly correlated
352 LTR14C 1 * 28.9 Weakly correlated
353 LTR16B 1 n.s 99.0 Moderately correlated
354 LTR16D 1 n.s 99.0 Moderately correlated
355 LTR19B 1 * 43.0 Weakly correlated
356 LTR19C 1 * 43.0 Weakly correlated
357 LTR1D 1 n.s 43.0 Weakly correlated
358 LTR1F 1 * 43.0 Weakly correlated
359 LTR24 1 * 74.0 Weakly correlated
360 LTR26D 1 * 0.0 Weakly correlated
361 LTR27D 1 * 43.0 Weakly correlated
362 LTR28C 1 n.s 43.0 Weakly correlated
363 LTR29 1 n.s 43.0 Weakly correlated
364 LTR33B 1 n.s 99.0 Moderately correlated
365 LTR34 1 * 74.0 Weakly correlated
366 LTR37A 1 n.s 99.0 Moderately correlated
367 LTR38B 1 * 74.0 Weakly correlated
368 LTR40b 1 n.s 99.0 Moderately correlated
369 LTR40c 1 n.s 99.0 Moderately correlated
370 LTR48 1 n.s 74.0 Weakly correlated
371 LTR49-int 1 n.s 74.0 Weakly correlated
372 LTR52 1 n.s 99.0 Moderately correlated
373 LTR53 1 n.s 99.0 Moderately correlated
374 LTR53-int 1 n.s 99.0 Moderately correlated
375 LTR56 1 n.s 74.0 Weakly correlated
376 LTR68 1 * 99.0 Moderately correlated
377 LTR7 1 n.s 19.6 Weakly correlated
378 LTR75 1 * 99.0 Moderately correlated
379 LTR75_1 1 ** 99.0 Moderately correlated
380 LTR81AB 1 ** 99.0 Moderately correlated
381 LTR82B 1 n.s 99.0 Moderately correlated
382 LTR83 1 n.s 99.0 Moderately correlated
383 LTR85a 1 n.s 99.0 Moderately correlated
384 LTR87 1 n.s 99.0 Moderately correlated
385 MER110 1 n.s 99.0 Moderately correlated
386 MER11B 1 n.s 19.6 Weakly correlated
387 MER11C 1 n.s 19.6 Weakly correlated
388 MER11D 1 n.s 19.6 Weakly correlated
389 MER34C_ 1 n.s 87.0 Highly correlated
390 MER41A 1 n.s 74.0 Weakly correlated
391 MER41B 1 n.s 74.0 Weakly correlated
392 MER41G 1 ** 74.0 Weakly correlated
393 MER4E 1 n.s 74.0 Weakly correlated
394 MER50B 1 n.s 43.0 Weakly correlated
395 MER50C 1 ** 43.0 Weakly correlated
396 MER51D 1 ** 43.0 Weakly correlated
397 MER61C 1 * 43.0 Weakly correlated
398 MER65D 1 * 87.0 Highly correlated
399 MER66B 1 n.s 43.0 Weakly correlated
400 MER67A 1 * 99.0 Moderately correlated
401 MER67B 1 n.s 99.0 Moderately correlated
402 MER68B 1 n.s 99.0 Moderately correlated
403 MER70B 1 n.s 87.0 Highly correlated
404 MER70C 1 * 99.0 Moderately correlated
405 MER72B 1 * 43.0 Weakly correlated
406 MER74A 1 n.s 99.0 Moderately correlated
407 MER77B 1 n.s 99.0 Moderately correlated
408 MER83 1 n.s 43.0 Weakly correlated
409 MER83B-int 1 n.s 99.0 Moderately correlated
410 MER89-int 1 n.s 99.0 Moderately correlated
411 MER90 1 n.s 99.0 Moderately correlated
412 MER9a1 1 n.s 19.6 Weakly correlated
413 MLT-int 1 n.s 99.0 Moderately correlated
414 MLT1F1-int 1 * 99.0 Moderately correlated
415 MLT2A2 1 n.s 74.0 Weakly correlated
416 MSTB2 1 n.s 74.0 Weakly correlated
417 MSTB2-int 1 * 74.0 Weakly correlated
418 MSTD 1 n.s 74.0 Weakly correlated
419 MamGyp-int 1 n.s 99.0 Moderately correlated
420 MamGypLTR1b 1 n.s 99.0 Moderately correlated
421 MamRep1527 1 n.s 99.0 Moderately correlated
422 SVA_A 1 n.s 19.6 Weakly correlated
423 X6A_LINE 1 * 99.0 Moderately correlated
424 X7A_LINE 1 * 319.0 Weakly correlated
425 X7C_LINE 1 * 319.0 Weakly correlated
426 X8_LINE 1 ** 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MER57D 130 **** 87.0 Highly correlated
2 MER57E1 111 **** 87.0 Highly correlated
3 MER57B1 80 **** 43.0 Weakly correlated
4 LTR54B 78 **** 74.0 Weakly correlated
5 MER57A1 58 **** 43.0 Weakly correlated
6 MER57C2 46 **** 87.0 Highly correlated
7 MER57B2 45 **** 43.0 Weakly correlated
8 MER57F 40 **** 74.0 Weakly correlated
9 MIRb 31 n.s 99.0 Moderately correlated
10 L2a 29 n.s 99.0 Moderately correlated
11 MER57C1 26 **** 74.0 Weakly correlated
12 MLT1A0 23 * 99.0 Moderately correlated
13 L2c 18 n.s 99.0 Moderately correlated
14 MER57E2 17 **** 87.0 Highly correlated
15 MIR 17 n.s 99.0 Moderately correlated
16 L2b 16 n.s 99.0 Moderately correlated
17 MLT1A 16 *** 99.0 Moderately correlated
18 MER52A 16 **** 74.0 Weakly correlated
19 MER41-int 14 **** 74.0 Weakly correlated
20 L2 14 n.s 99.0 Moderately correlated
21 LTR54 13 **** 74.0 Weakly correlated
22 MIRc 13 n.s 99.0 Moderately correlated
23 MLT1B 12 n.s 99.0 Moderately correlated
24 MLT1H 12 * 99.0 Moderately correlated
25 HERVL-int 12 n.s 74.0 Weakly correlated
26 ERVL-B4-int 11 n.s 99.0 Moderately correlated
27 MER50 10 *** 43.0 Weakly correlated
28 MER52C 10 **** 74.0 Weakly correlated
29 MLT1C 10 n.s 94.0 Moderately correlated
30 L1MEc 10 n.s 99.0 Moderately correlated
31 MLT1A1 8 n.s 87.0 Highly correlated
32 MLT1J2 7 * 99.0 Moderately correlated
33 MSTB 7 n.s 43.0 Weakly correlated
34 ERVL-E-int 7 n.s 99.0 Moderately correlated
35 MIR3 7 n.s 99.0 Moderately correlated
36 L3 6 n.s 99.0 Moderately correlated
37 LTR31 6 **** 74.0 Weakly correlated
38 THE1B-int 6 n.s 43.0 Weakly correlated
39 LTR1A2 5 ** 43.0 Weakly correlated
40 L1M4 5 n.s 99.0 Moderately correlated
41 HAL1 5 n.s 99.0 Moderately correlated
42 L1MEf 4 n.s 99.0 Moderately correlated
43 LTR16B1 4 ** 99.0 Moderately correlated
44 L1M1 4 n.s 74.0 Weakly correlated
45 L1MC4 4 n.s 99.0 Moderately correlated
46 THE1D 4 n.s 43.0 Weakly correlated
47 L1ME3A 4 n.s 99.0 Moderately correlated
48 MLT1J1 4 n.s 99.0 Moderately correlated
49 MLT1D 4 n.s 99.0 Moderately correlated
50 MLT1K 4 n.s 99.0 Moderately correlated
51 MSTA-int 4 n.s 43.0 Weakly correlated
52 L1MEg 4 n.s 99.0 Moderately correlated
53 L1M4b 3 n.s 99.0 Moderately correlated
54 L1PA6 3 n.s 28.9 Weakly correlated
55 MER72 3 * 43.0 Weakly correlated
56 MLT1G 3 n.s 99.0 Moderately correlated
57 MLT1H1 3 n.s 99.0 Moderately correlated
58 L1ME3G 3 n.s 99.0 Moderately correlated
59 LTR33 3 n.s 99.0 Moderately correlated
60 LTR41B 3 ** 99.0 Moderately correlated
61 MLT1G1 3 n.s 99.0 Moderately correlated
62 MLT1J 3 n.s 99.0 Moderately correlated
63 MSTA 3 n.s 43.0 Weakly correlated
64 L1MB8 3 n.s 99.0 Moderately correlated
65 L1MDa 3 n.s 99.0 Moderately correlated
66 MIR1_Amn 3 n.s 319.0 Weakly correlated
67 THE1B 3 n.s 43.0 Weakly correlated
68 L1MCa 3 n.s 99.0 Moderately correlated
69 LTR26 3 ** 74.0 Weakly correlated
70 L1M5 3 n.s 99.0 Moderately correlated
71 LTR16A 3 n.s 99.0 Moderately correlated
72 LTR18C 3 **** 43.0 Weakly correlated
73 LTR22A 3 **** 43.0 Weakly correlated
74 MLT1O 3 n.s 99.0 Moderately correlated
75 MER52D 3 n.s 74.0 Weakly correlated
76 L1MEd 3 n.s 99.0 Moderately correlated
77 MLT1I 3 n.s 99.0 Moderately correlated
78 AluJo 2 n.s 74.0 Weakly correlated
79 AluSq2 2 n.s 74.0 Weakly correlated
80 ERV3-16A3_I-int 2 n.s 99.0 Moderately correlated
81 HERVH-int 2 n.s 28.9 Weakly correlated
82 L1MA3 2 n.s 74.0 Weakly correlated
83 LTR41 2 n.s 99.0 Moderately correlated
84 MLT1F1 2 n.s 99.0 Moderately correlated
85 MLT1N2 2 n.s 99.0 Moderately correlated
86 AluJr 2 n.s 74.0 Weakly correlated
87 L1MC4a 2 n.s 99.0 Moderately correlated
88 L1MEi 2 n.s 99.0 Moderately correlated
89 LTR16E2 2 n.s 99.0 Moderately correlated
90 LTR25 2 ** 43.0 Weakly correlated
91 LTR33A 2 n.s 99.0 Moderately correlated
92 MamSINE1 2 n.s 99.0 Moderately correlated
93 AluJb 2 n.s 74.0 Weakly correlated
94 AluSz 2 n.s 74.0 Weakly correlated
95 L1MD1 2 n.s 99.0 Moderately correlated
96 L1ME2z 2 n.s 99.0 Moderately correlated
97 L1PA5 2 n.s 19.6 Weakly correlated
98 L1PB3 2 n.s 74.0 Weakly correlated
99 LTR16C 2 n.s 99.0 Moderately correlated
100 MLT1G3 2 n.s 99.0 Moderately correlated
101 MSTB1 2 n.s 74.0 Weakly correlated
102 PABL_A-int 2 * 74.0 Weakly correlated
103 L1ME3E 2 n.s 99.0 Moderately correlated
104 L1PA10 2 n.s 74.0 Weakly correlated
105 L4_C_Mam 2 n.s 99.0 Moderately correlated
106 LTR8B 2 n.s 43.0 Weakly correlated
107 MLT1E1A 2 n.s 99.0 Moderately correlated
108 LFSINE_Vert 2 * 319.0 Weakly correlated
109 LTR18B 2 ** 43.0 Weakly correlated
110 LTR47A 2 * 74.0 Weakly correlated
111 MLT1L 2 n.s 99.0 Moderately correlated
112 L1MA2 2 n.s 74.0 Weakly correlated
113 L1ME1 2 n.s 99.0 Moderately correlated
114 L1PA15-16 2 n.s 74.0 Weakly correlated
115 LTR27E 2 ** 43.0 Weakly correlated
116 MER39 2 n.s 74.0 Weakly correlated
117 MER89 2 n.s 99.0 Moderately correlated
118 MLT1F 2 n.s 99.0 Moderately correlated
119 AmnSINE1 2 * 319.0 Weakly correlated
120 LTR50 2 n.s 99.0 Moderately correlated
121 LTR78 2 n.s 99.0 Moderately correlated
122 LTR78B 2 n.s 99.0 Moderately correlated
123 L1MB7 2 n.s 99.0 Moderately correlated
124 L4_B_Mam 2 n.s 99.0 Moderately correlated
125 LTR57 2 ** 74.0 Weakly correlated
126 AluSx1 1 n.s 74.0 Weakly correlated
127 L1M3f 1 n.s 87.0 Highly correlated
128 L1M4a1 1 n.s 99.0 Moderately correlated
129 L1MA5 1 n.s 87.0 Highly correlated
130 L1MD3 1 n.s 99.0 Moderately correlated
131 L1PA16 1 n.s 74.0 Weakly correlated
132 L1PB1 1 n.s 74.0 Weakly correlated
133 L4_A_Mam 1 n.s 99.0 Moderately correlated
134 MER21A 1 n.s 74.0 Weakly correlated
135 MER51D 1 ** 43.0 Weakly correlated
136 MER52-int 1 n.s 99.0 Moderately correlated
137 MER57E3 1 * 74.0 Weakly correlated
138 MER66-int 1 n.s 43.0 Weakly correlated
139 MER76 1 n.s 99.0 Moderately correlated
140 MLT1F1-int 1 * 99.0 Moderately correlated
141 MLT1M 1 n.s 99.0 Moderately correlated
142 MamRep605 1 n.s 99.0 Moderately correlated
143 AluJr4 1 n.s 74.0 Weakly correlated
144 HERVIP10F-int 1 n.s 28.9 Weakly correlated
145 L1M2 1 n.s 99.0 Moderately correlated
146 L1MA4A 1 n.s 87.0 Highly correlated
147 L1ME3F 1 n.s 99.0 Moderately correlated
148 L1PA11 1 n.s 74.0 Weakly correlated
149 LTR19B 1 * 43.0 Weakly correlated
150 LTR75_1 1 ** 99.0 Moderately correlated
151 LTR85c 1 n.s 99.0 Moderately correlated
152 LTR87 1 n.s 99.0 Moderately correlated
153 MER89-int 1 n.s 99.0 Moderately correlated
154 MLT1E 1 n.s 99.0 Moderately correlated
155 HUERS-P3-int 1 n.s 43.0 Weakly correlated
156 L1M3c 1 n.s 99.0 Moderately correlated
157 L1MC 1 n.s 99.0 Moderately correlated
158 L1MC1 1 n.s 99.0 Moderately correlated
159 L1ME3C 1 n.s 99.0 Moderately correlated
160 L1MEb 1 n.s 99.0 Moderately correlated
161 L1PB4 1 n.s 99.0 Moderately correlated
162 LTR16A2 1 n.s 99.0 Moderately correlated
163 LTR16B2 1 n.s 99.0 Moderately correlated
164 LTR1F 1 * 43.0 Weakly correlated
165 LTR26C 1 * 0.0 Weakly correlated
166 LTR35A 1 ** 43.0 Weakly correlated
167 LTR48 1 n.s 74.0 Weakly correlated
168 MER11D 1 n.s 19.6 Weakly correlated
169 MER41A 1 n.s 74.0 Weakly correlated
170 MER41B 1 n.s 74.0 Weakly correlated
171 MLT1H2 1 n.s 99.0 Moderately correlated
172 MLT2B4 1 n.s 99.0 Moderately correlated
173 MLT2F 1 n.s 99.0 Moderately correlated
174 L1MB2 1 n.s 99.0 Moderately correlated
175 L1PA17 1 n.s 74.0 Weakly correlated
176 L1PBb 1 n.s 74.0 Weakly correlated
177 LTR34 1 * 74.0 Weakly correlated
178 MER21C 1 n.s 99.0 Moderately correlated
179 MER4D 1 n.s 74.0 Weakly correlated
180 MER70C 1 * 99.0 Moderately correlated
181 MSTB2 1 n.s 74.0 Weakly correlated
182 MamGyp-int 1 n.s 99.0 Moderately correlated
183 MamGypLTR3a 1 n.s 99.0 Moderately correlated
184 PRIMA41-int 1 n.s 74.0 Weakly correlated
185 AluSc 1 n.s 74.0 Weakly correlated
186 L1P4a 1 n.s 74.0 Weakly correlated
187 L1PA7 1 n.s 74.0 Weakly correlated
188 LTR16E1 1 n.s 99.0 Moderately correlated
189 LTR45C 1 n.s 99.0 Moderately correlated
190 MER50B 1 n.s 43.0 Weakly correlated
191 MLT1F2 1 n.s 99.0 Moderately correlated
192 MLT1J-int 1 n.s 99.0 Moderately correlated
193 HERVL40-int 1 n.s 99.0 Moderately correlated
194 L1MA8 1 n.s 87.0 Highly correlated
195 L1MB5 1 n.s 99.0 Moderately correlated
196 L1MD2 1 n.s 99.0 Moderately correlated
197 L1PA13 1 n.s 74.0 Weakly correlated
198 LTR19-int 1 n.s 43.0 Weakly correlated
199 LTR33A_ 1 n.s 99.0 Moderately correlated
200 MER83 1 n.s 43.0 Weakly correlated
201 MLT1H-int 1 n.s 99.0 Moderately correlated
202 THE1A-int 1 n.s 43.0 Weakly correlated
203 AluSx3 1 n.s 74.0 Weakly correlated
204 ERVL-int 1 n.s 99.0 Moderately correlated
205 HERV9N-int 1 n.s 19.6 Weakly correlated
206 HERVL74-int 1 n.s 99.0 Moderately correlated
207 L1MC5 1 n.s 99.0 Moderately correlated
208 L1MCc 1 n.s 99.0 Moderately correlated
209 L1ME4a 1 n.s 99.0 Moderately correlated
210 LTR16 1 n.s 99.0 Moderately correlated
211 LTR1D 1 n.s 43.0 Weakly correlated
212 LTR25-int 1 n.s 43.0 Weakly correlated
213 LTR41C 1 n.s 99.0 Moderately correlated
214 LTR79 1 n.s 99.0 Moderately correlated
215 MamGypsy2-I 1 n.s 99.0 Moderately correlated
216 AluSx 1 n.s 74.0 Weakly correlated
217 CR1-3_Croc 1 n.s 319.0 Weakly correlated
218 FLAM_C 1 n.s 74.0 Weakly correlated
219 HERVIP10FH-int 1 n.s 28.9 Weakly correlated
220 HERVL66-int 1 * 43.0 Weakly correlated
221 L1M4c 1 n.s 99.0 Moderately correlated
222 L1MC3 1 n.s 99.0 Moderately correlated
223 L1ME4c 1 n.s 99.0 Moderately correlated
224 L1PA4 1 n.s 19.6 Weakly correlated
225 LTR12E 1 * 19.6 Weakly correlated
226 LTR16A1 1 n.s 99.0 Moderately correlated
227 MER49 1 n.s 43.0 Weakly correlated
228 MER50C 1 ** 43.0 Weakly correlated
229 MER66B 1 n.s 43.0 Weakly correlated
230 MER67C 1 n.s 99.0 Moderately correlated
231 MLT1E1 1 n.s 99.0 Moderately correlated
232 MLT1E2 1 n.s 99.0 Moderately correlated
233 MamGypLTR1b 1 n.s 99.0 Moderately correlated
234 MamRep1527 1 n.s 99.0 Moderately correlated
235 SVA_D 1 n.s 15.2 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ERVL-B4-INT 99.0 Moderately correlated
2 HERVL-INT 74.0 Weakly correlated
3 MLT1A1 87.0 Highly correlated