ZRdb KZFP & Repeats
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Human_ZNF490

  • Protein
    Zinc finger protein 490
  • Length
    529
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    74.0 Mya
  • Time of Changing in binding specificity
    43.0 Mya
  • Uniprot_ID
    Q9ULM2
  • NCBI_ID
    57474
Sequence:
MRRNSSLSFQMERPLEEQVQSKWSSSQGRTGTGGSDVLQMQNSEHHGQSIKTQTDSISLEDVAVNFTLEEWALLDPGQRNIYRDVMRATFKNLACIGEKWKDQDIEDEHKNQGRNLRSPMVEALCENKEDCPCGKSTSQIPDLNTNLETPTGLKPCDCSVCGEVFMHQVSLNRHMRSHTEQKPNECHEYGEKPHKCKECGKTFTRSSSIRTHERIHTGEKPYECKECGKAFAFLFSFRNHIRIHTGETPYECKECGKAFRYLTALRRHEKNHTGEKPYKCKQCGKAFIYYQPFLTHERTHTGEKPYECKQCGKAFSCPTYLRSHEKTHTGEKPFVCRECGRAFFSHSSLRKHVKTHTGVQPYTCKKCGEAFKSSSSCEVHERTHFGEKPYECKQCGKAFNSSSYLQLHERVHTGEKTYECKECGKAFLYSTHFRIHERTHTREKPYECKQCGRVFIYFSHLRRHERSHTGVKPCECKQCGKAFTCLNSLKVHKRIHTGERPFQCRQCGKAFSYSKSLHVHERTHSRQKP
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 57..132
2 C2h2 156..178
3 C2h2 194..216
4 C2h2 222..244
5 C2h2 250..272
6 C2h2 278..300
7 C2h2 306..328
8 C2h2 334..356
9 C2h2 362..384
10 C2h2 390..412
11 C2h2 418..440
12 C2h2 446..468
13 C2h2 474..496
14 C2h2 502..524
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1PA7 707 **** 74.0 Weakly correlated
2 L1M1 560 **** 74.0 Weakly correlated
3 L1PB1 531 **** 74.0 Weakly correlated
4 L1PA6 467 **** 28.9 Weakly correlated
5 L1PA5 387 **** 19.6 Weakly correlated
6 L1PA13 344 **** 74.0 Weakly correlated
7 L1PA10 339 **** 74.0 Weakly correlated
8 L1PA15 302 **** 74.0 Weakly correlated
9 L1MA2 300 **** 74.0 Weakly correlated
10 L1MA3 274 **** 74.0 Weakly correlated
11 L1PREC2 237 **** 43.0 Highly correlated
12 L1PA8 207 **** 74.0 Weakly correlated
13 L1PA11 206 **** 74.0 Weakly correlated
14 L1PBa 190 **** 74.0 Weakly correlated
15 MIRb 184 ** 99.0 Weakly correlated
16 L1P2 178 **** 28.9 Weakly correlated
17 L1M2 176 **** 99.0 Weakly correlated
18 L1PA14 163 **** 74.0 Weakly correlated
19 L1MA1 157 **** 74.0 Weakly correlated
20 L1PA16 155 **** 74.0 Weakly correlated
21 L1MA4A 153 **** 87.0 Weakly correlated
22 L1PA8A 145 **** 74.0 Weakly correlated
23 L1M4 141 **** 99.0 Weakly correlated
24 L2a 138 n.s 99.0 Weakly correlated
25 MIR 137 n.s 99.0 Weakly correlated
26 L1PA4 130 **** 19.6 Weakly correlated
27 L1MEc 127 **** 99.0 Weakly correlated
28 L2c 127 n.s 99.0 Weakly correlated
29 L1MA4 117 **** 87.0 Weakly correlated
30 L1MA9 106 **** 99.0 Weakly correlated
31 AluY 99 n.s 74.0 Weakly correlated
32 L1M4c 96 **** 99.0 Weakly correlated
33 L2b 95 n.s 99.0 Weakly correlated
34 AluSx 91 n.s 74.0 Weakly correlated
35 L1P3 88 **** 74.0 Weakly correlated
36 L1MCa 83 **** 99.0 Weakly correlated
37 AluJb 79 n.s 74.0 Weakly correlated
38 L1ME1 79 n.s 99.0 Weakly correlated
39 AluSz 77 n.s 74.0 Weakly correlated
40 MIRc 77 * 99.0 Weakly correlated
41 L1MA5 74 **** 87.0 Weakly correlated
42 MLT1A0 69 **** 99.0 Weakly correlated
43 L1PA15-16 67 **** 74.0 Weakly correlated
44 AluJr 65 n.s 74.0 Weakly correlated
45 L1MEf 62 **** 99.0 Weakly correlated
46 L1MB3 60 **** 99.0 Weakly correlated
47 L1PB3 59 **** 74.0 Weakly correlated
48 L1MA8 58 **** 87.0 Weakly correlated
49 AluSx1 57 n.s 74.0 Weakly correlated
50 L1MDa 57 **** 99.0 Weakly correlated
51 L1PA3 57 n.s 19.6 Weakly correlated
52 MIR3 57 * 99.0 Weakly correlated
53 L1MB7 56 n.s 99.0 Weakly correlated
54 L1MA7 52 **** 87.0 Weakly correlated
55 L1MEd 52 ** 99.0 Weakly correlated
56 L1PA12 51 **** 74.0 Weakly correlated
57 MSTB 51 **** 43.0 Highly correlated
58 L1MA6 50 **** 87.0 Weakly correlated
59 L1PB2 50 **** 74.0 Weakly correlated
60 AluJo 49 n.s 74.0 Weakly correlated
61 AluSq2 49 n.s 74.0 Weakly correlated
62 L1PB4 49 **** 99.0 Weakly correlated
63 L1PA17 48 **** 74.0 Weakly correlated
64 L2 46 n.s 99.0 Weakly correlated
65 L1MC1 45 * 99.0 Weakly correlated
66 AluSc 43 n.s 74.0 Weakly correlated
67 L1MEg 43 ** 99.0 Weakly correlated
68 AluSg 42 n.s 74.0 Weakly correlated
69 L1MB2 42 **** 99.0 Weakly correlated
70 L1MA5A 36 **** 87.0 Weakly correlated
71 L1PBa1 36 **** 74.0 Weakly correlated
72 L1M5 35 n.s 99.0 Weakly correlated
73 AluSp 34 n.s 74.0 Weakly correlated
74 AluSz6 34 n.s 74.0 Weakly correlated
75 MLT1C 34 n.s 94.0 Weakly correlated
76 MSTA 34 n.s 43.0 Highly correlated
77 L1P4a 31 **** 74.0 Weakly correlated
78 MLT1H 31 **** 99.0 Weakly correlated
79 L1MB8 30 n.s 99.0 Weakly correlated
80 L1P1 30 **** 19.6 Weakly correlated
81 THE1B 30 n.s 43.0 Highly correlated
82 L1M3f 29 **** 87.0 Weakly correlated
83 L1MB4 29 ** 99.0 Weakly correlated
84 MLT1F2 29 **** 99.0 Weakly correlated
85 L1MD1 28 * 99.0 Weakly correlated
86 L1MD2 28 n.s 99.0 Weakly correlated
87 HAL1 27 n.s 99.0 Weakly correlated
88 L1M4b 27 **** 99.0 Weakly correlated
89 L3 27 n.s 99.0 Weakly correlated
90 L1MB1 26 ** 99.0 Weakly correlated
91 MLT1D 26 n.s 99.0 Weakly correlated
92 L1MC4 25 n.s 99.0 Weakly correlated
93 AluSx3 24 n.s 74.0 Weakly correlated
94 MLT1N2 22 **** 99.0 Weakly correlated
95 AluSc8 20 n.s 74.0 Weakly correlated
96 L1ME2 20 n.s 99.0 Weakly correlated
97 MLT1J 20 n.s 99.0 Weakly correlated
98 MLT1K 20 n.s 99.0 Weakly correlated
99 L1ME3A 19 n.s 99.0 Weakly correlated
100 L1MB5 18 n.s 99.0 Weakly correlated
101 LTR33 18 * 99.0 Weakly correlated
102 AluJr4 17 n.s 74.0 Weakly correlated
103 AluSq 17 n.s 74.0 Weakly correlated
104 L1M3c 17 **** 99.0 Weakly correlated
105 L1PA2 17 n.s 15.2 Weakly correlated
106 MLT1B 17 n.s 99.0 Weakly correlated
107 THE1B-int 17 n.s 43.0 Highly correlated
108 L1M2a 16 **** 87.0 Weakly correlated
109 L1M2c 16 **** 87.0 Weakly correlated
110 L1M4a2 16 **** 99.0 Weakly correlated
111 MIR1_Amn 16 **** 319.0 Weakly correlated
112 MLT1I 16 * 99.0 Weakly correlated
113 L1MC2 15 n.s 99.0 Weakly correlated
114 L1MD 15 n.s 99.0 Weakly correlated
115 L1ME4a 15 n.s 99.0 Weakly correlated
116 MLT1H2 15 **** 99.0 Weakly correlated
117 THE1D 15 n.s 43.0 Highly correlated
118 HERVL-int 14 n.s 74.0 Weakly correlated
119 L1M3 14 n.s 99.0 Weakly correlated
120 L1MC5 14 n.s 99.0 Weakly correlated
121 L1ME2z 14 n.s 99.0 Weakly correlated
122 L1ME4b 14 n.s 99.0 Weakly correlated
123 L1PBb 14 **** 74.0 Weakly correlated
124 MLT1A 14 n.s 99.0 Weakly correlated
125 MamRTE1 14 ** 99.0 Weakly correlated
126 FLAM_C 13 n.s 74.0 Weakly correlated
127 L1MC 13 n.s 99.0 Weakly correlated
128 MER50 13 *** 43.0 Highly correlated
129 MLT1A1 13 n.s 87.0 Weakly correlated
130 MLT1L 13 n.s 99.0 Weakly correlated
131 L1MCc 12 * 99.0 Weakly correlated
132 THE1C 12 n.s 43.0 Highly correlated
133 FLAM_A 11 n.s 74.0 Weakly correlated
134 L1M3e 11 **** 99.0 Weakly correlated
135 LOR1-int 11 *** 74.0 Weakly correlated
136 MER54B 11 **** 87.0 Weakly correlated
137 MLT1J2 11 * 99.0 Weakly correlated
138 L1M3b 10 **** 99.0 Weakly correlated
139 L1MA10 10 n.s 99.0 Weakly correlated
140 L1MC3 10 n.s 99.0 Weakly correlated
141 L1ME3G 10 n.s 99.0 Weakly correlated
142 L1PB 10 ** 74.0 Weakly correlated
143 MLT1G1 10 * 99.0 Weakly correlated
144 MLT2B2 10 *** 99.0 Weakly correlated
145 MSTD 10 n.s 74.0 Weakly correlated
146 ERVL-E-int 9 n.s 99.0 Weakly correlated
147 L1M3de 9 **** 99.0 Weakly correlated
148 L3b 9 n.s 99.0 Weakly correlated
149 MLT1E1A 9 * 99.0 Weakly correlated
150 AluSc5 8 n.s 74.0 Weakly correlated
151 L1HS 8 n.s 8.6 Weakly correlated
152 L1M4a1 8 n.s 99.0 Weakly correlated
153 L1ME3Cz 8 n.s 99.0 Weakly correlated
154 L4_C_Mam 8 n.s 99.0 Weakly correlated
155 LTR16C 8 n.s 99.0 Weakly correlated
156 MER51-int 8 **** 43.0 Highly correlated
157 MER52A 8 n.s 74.0 Weakly correlated
158 MER74A 8 ** 99.0 Weakly correlated
159 AluSx4 7 n.s 74.0 Weakly correlated
160 HERVH-int 7 n.s 28.9 Weakly correlated
161 L1M6 7 n.s 99.0 Weakly correlated
162 L1ME3 7 n.s 99.0 Weakly correlated
163 LTR36 7 **** 74.0 Weakly correlated
164 MER4B-int 7 * 99.0 Weakly correlated
165 MLT2B3 7 n.s 99.0 Weakly correlated
166 THE1A 7 n.s 43.0 Highly correlated
167 L1M2b 6 **** 87.0 Weakly correlated
168 L1MC4a 6 n.s 99.0 Weakly correlated
169 L1MC5a 6 n.s 99.0 Weakly correlated
170 L1MCb 6 n.s 99.0 Weakly correlated
171 L1MD3 6 n.s 99.0 Weakly correlated
172 L1ME3E 6 n.s 99.0 Weakly correlated
173 L1ME4c 6 n.s 99.0 Weakly correlated
174 L1MEi 6 n.s 99.0 Weakly correlated
175 L1MEj 6 n.s 99.0 Weakly correlated
176 L1P4 6 n.s 74.0 Weakly correlated
177 LTR12C 6 n.s 19.6 Weakly correlated
178 LTR16 6 n.s 99.0 Weakly correlated
179 LTR41 6 ** 99.0 Weakly correlated
180 MER21C 6 n.s 99.0 Weakly correlated
181 MER4-int 6 n.s 74.0 Weakly correlated
182 MLT2B1 6 n.s 99.0 Weakly correlated
183 MLT2F 6 * 99.0 Weakly correlated
184 THE1A-int 6 n.s 43.0 Highly correlated
185 THE1C-int 6 n.s 43.0 Highly correlated
186 AluSg4 5 n.s 74.0 Weakly correlated
187 AluYc 5 n.s 74.0 Weakly correlated
188 AluYj4 5 n.s 0.0 Weakly correlated
189 HERVL40-int 5 * 99.0 Weakly correlated
190 L1M3d 5 ** 99.0 Weakly correlated
191 L1M7 5 n.s 99.0 Weakly correlated
192 LOR1b 5 ** 74.0 Weakly correlated
193 LTR16A 5 n.s 99.0 Weakly correlated
194 LTR26 5 ** 74.0 Weakly correlated
195 LTR50 5 n.s 99.0 Weakly correlated
196 LTR67B 5 n.s 99.0 Weakly correlated
197 LTR7 5 n.s 19.6 Weakly correlated
198 MLT1E2 5 n.s 99.0 Weakly correlated
199 MLT1H1 5 n.s 99.0 Weakly correlated
200 MLT1O 5 n.s 99.0 Weakly correlated
201 MLT2A2 5 n.s 74.0 Weakly correlated
202 MSTB1 5 n.s 74.0 Weakly correlated
203 AluYa5 4 n.s 15.2 Weakly correlated
204 ERV3-16A3_I-int 4 n.s 99.0 Weakly correlated
205 HERV16-int 4 n.s 99.0 Weakly correlated
206 HERVL74-int 4 ** 99.0 Weakly correlated
207 L1MDb 4 n.s 99.0 Weakly correlated
208 L1ME3B 4 n.s 99.0 Weakly correlated
209 L1ME3D 4 n.s 99.0 Weakly correlated
210 L4_A_Mam 4 n.s 99.0 Weakly correlated
211 LTR43 4 ** 74.0 Weakly correlated
212 LTR49-int 4 n.s 74.0 Weakly correlated
213 LTR81B 4 ** 99.0 Weakly correlated
214 LTR88b 4 ** 99.0 Weakly correlated
215 MER57A-int 4 n.s 43.0 Highly correlated
216 MLT1F 4 n.s 99.0 Weakly correlated
217 MLT1J1 4 n.s 99.0 Weakly correlated
218 MamGypsy2-I 4 n.s 99.0 Weakly correlated
219 THE1D-int 4 n.s 28.9 Weakly correlated
220 AluSg7 3 n.s 74.0 Weakly correlated
221 AluYb8 3 n.s 15.2 Weakly correlated
222 AluYh3 3 n.s 15.2 Weakly correlated
223 AluYk11 3 ** 15.2 Weakly correlated
224 ERVL-B4-int 3 n.s 99.0 Weakly correlated
225 HERVH48-int 3 * 28.9 Weakly correlated
226 L1M2a1 3 ** 79.0 Weakly correlated
227 L1MEb 3 n.s 99.0 Weakly correlated
228 L1P4b 3 ** 74.0 Weakly correlated
229 L1P4e 3 ** 74.0 Weakly correlated
230 LTR16E1 3 n.s 99.0 Weakly correlated
231 LTR16E2 3 n.s 99.0 Weakly correlated
232 LTR18A 3 *** 43.0 Highly correlated
233 LTR38A1 3 **** 74.0 Weakly correlated
234 LTR38B 3 *** 74.0 Weakly correlated
235 LTR40b 3 n.s 99.0 Weakly correlated
236 LTR54B 3 * 74.0 Weakly correlated
237 LTR55 3 ** 99.0 Weakly correlated
238 LTR78 3 n.s 99.0 Weakly correlated
239 LTR8 3 n.s 43.0 Highly correlated
240 MER34C2 3 ** 74.0 Weakly correlated
241 MER50-int 3 n.s 43.0 Highly correlated
242 MER51A 3 n.s 43.0 Highly correlated
243 MER77B 3 n.s 99.0 Weakly correlated
244 MER83 3 ** 43.0 Highly correlated
245 MLT2A1 3 n.s 74.0 Weakly correlated
246 MSTA-int 3 n.s 43.0 Highly correlated
247 MSTD-int 3 n.s 74.0 Weakly correlated
248 MamGypLTR1b 3 * 99.0 Weakly correlated
249 MamRep605 3 n.s 99.0 Weakly correlated
250 PRIMA4-int 3 * 74.0 Weakly correlated
251 SVA_B 3 n.s 15.2 Weakly correlated
252 AluYk2 2 n.s 19.6 Weakly correlated
253 AluYm1 2 n.s 19.6 Weakly correlated
254 AmnSINE1 2 n.s 319.0 Weakly correlated
255 FAM 2 n.s 87.0 Weakly correlated
256 FRAM 2 n.s 74.0 Weakly correlated
257 HERVK-int 2 n.s 28.9 Weakly correlated
258 HUERS-P1-int 2 n.s 43.0 Highly correlated
259 L1M3a 2 n.s 99.0 Weakly correlated
260 L1M6B 2 * 99.0 Weakly correlated
261 L1ME3C 2 n.s 99.0 Weakly correlated
262 L1ME3F 2 n.s 99.0 Weakly correlated
263 L1ME5 2 n.s 99.0 Weakly correlated
264 L1MEg1 2 n.s 99.0 Weakly correlated
265 L1MEg2 2 n.s 99.0 Weakly correlated
266 L1P4d 2 * 74.0 Weakly correlated
267 LOR1a 2 n.s 74.0 Weakly correlated
268 LTR102_Mam 2 * 99.0 Weakly correlated
269 LTR10A 2 * 28.9 Weakly correlated
270 LTR12D 2 n.s 19.6 Weakly correlated
271 LTR12_ 2 n.s 28.9 Weakly correlated
272 LTR16A1 2 n.s 99.0 Weakly correlated
273 LTR16A2 2 n.s 99.0 Weakly correlated
274 LTR16B2 2 n.s 99.0 Weakly correlated
275 LTR17 2 n.s 28.9 Weakly correlated
276 LTR26C 2 * 0.0 Weakly correlated
277 LTR28C 2 n.s 43.0 Highly correlated
278 LTR32 2 n.s 43.0 Highly correlated
279 LTR33A 2 n.s 99.0 Weakly correlated
280 LTR33B 2 n.s 99.0 Weakly correlated
281 LTR37B 2 n.s 99.0 Weakly correlated
282 LTR39 2 n.s 43.0 Highly correlated
283 LTR40a 2 n.s 99.0 Weakly correlated
284 LTR41C 2 n.s 99.0 Weakly correlated
285 LTR52-int 2 ** 99.0 Weakly correlated
286 LTR5B 2 n.s 28.9 Weakly correlated
287 LTR76 2 * 74.0 Weakly correlated
288 LTR83 2 * 99.0 Weakly correlated
289 LTR85a 2 n.s 99.0 Weakly correlated
290 LTR9 2 n.s 43.0 Highly correlated
291 LTR9A1 2 n.s 43.0 Highly correlated
292 MER11A 2 n.s 28.9 Weakly correlated
293 MER21-int 2 n.s 99.0 Weakly correlated
294 MER21A 2 n.s 74.0 Weakly correlated
295 MER39 2 n.s 74.0 Weakly correlated
296 MER41A 2 n.s 74.0 Weakly correlated
297 MER4A1_ 2 n.s 74.0 Weakly correlated
298 MER4B 2 n.s 74.0 Weakly correlated
299 MER4E1 2 n.s 74.0 Weakly correlated
300 MER52D 2 n.s 74.0 Weakly correlated
301 MER54A 2 n.s 87.0 Weakly correlated
302 MER57B2 2 n.s 43.0 Highly correlated
303 MER57C2 2 * 87.0 Weakly correlated
304 MER65-int 2 n.s 87.0 Weakly correlated
305 MER66B 2 n.s 43.0 Highly correlated
306 MER68 2 n.s 99.0 Weakly correlated
307 MER70A 2 n.s 87.0 Weakly correlated
308 MER90a 2 n.s 99.0 Weakly correlated
309 MER9a3 2 n.s 28.9 Weakly correlated
310 MLT1A0-int 2 n.s 99.0 Weakly correlated
311 MLT1F1 2 n.s 99.0 Weakly correlated
312 MLT1G 2 n.s 99.0 Weakly correlated
313 MLT1G3 2 n.s 99.0 Weakly correlated
314 MLT1M 2 n.s 99.0 Weakly correlated
315 MLT2C1 2 n.s 99.0 Weakly correlated
316 MSTB2 2 n.s 74.0 Weakly correlated
317 MamGypLTR1d 2 * 99.0 Weakly correlated
318 MamSINE1 2 n.s 99.0 Weakly correlated
319 X6B_LINE 2 ** 99.0 Weakly correlated
320 X7A_LINE 2 * 319.0 Weakly correlated
321 Alu 1 n.s 74.0 Weakly correlated
322 AluSq10 1 n.s 74.0 Weakly correlated
323 AluSq4 1 n.s 74.0 Weakly correlated
324 AluYc3 1 n.s 74.0 Weakly correlated
325 AluYe5 1 n.s 74.0 Weakly correlated
326 AluYg6 1 n.s 15.2 Weakly correlated
327 AluYi6 1 n.s 15.2 Weakly correlated
328 CR1-3_Croc 1 n.s 319.0 Weakly correlated
329 CR1-L3A_Croc 1 * 319.0 Weakly correlated
330 CR1_Mam 1 n.s 99.0 Weakly correlated
331 ERV24B_Prim-int 1 n.s 74.0 Weakly correlated
332 HAL1M8 1 n.s 99.0 Weakly correlated
333 HAL1ME 1 n.s 99.0 Weakly correlated
334 HAL1b 1 n.s 99.0 Weakly correlated
335 HERV17-int 1 n.s 28.9 Weakly correlated
336 HERV9N-int 1 n.s 19.6 Weakly correlated
337 HERVFH19-int 1 n.s 43.0 Highly correlated
338 HERVIP10FH-int 1 n.s 28.9 Weakly correlated
339 HERVK11-int 1 n.s 28.9 Weakly correlated
340 HERVL18-int 1 n.s 43.0 Highly correlated
341 HERVP71A-int 1 n.s 43.0 Highly correlated
342 Harlequin-int 1 n.s 74.0 Weakly correlated
343 L1M8 1 n.s 99.0 Weakly correlated
344 L1MEh 1 n.s 99.0 Weakly correlated
345 L1P3b 1 * 43.0 Highly correlated
346 L2-3_Crp 1 n.s 431.0 Weakly correlated
347 LFSINE_Vert 1 n.s 319.0 Weakly correlated
348 LTR106_Mam 1 n.s 99.0 Weakly correlated
349 LTR107_Mam 1 n.s 99.0 Weakly correlated
350 LTR10B1 1 * 28.9 Weakly correlated
351 LTR13 1 n.s 19.6 Weakly correlated
352 LTR13_ 1 * 28.9 Weakly correlated
353 LTR14B 1 n.s 28.9 Weakly correlated
354 LTR16B 1 n.s 99.0 Weakly correlated
355 LTR16D 1 n.s 99.0 Weakly correlated
356 LTR1D1 1 n.s 43.0 Highly correlated
357 LTR1E 1 n.s 43.0 Highly correlated
358 LTR21A 1 * 28.9 Weakly correlated
359 LTR21B 1 ** 28.9 Weakly correlated
360 LTR21C 1 *** 28.9 Weakly correlated
361 LTR22B2 1 ** 28.9 Weakly correlated
362 LTR23 1 n.s 74.0 Weakly correlated
363 LTR24C 1 n.s 74.0 Weakly correlated
364 LTR25-int 1 n.s 43.0 Highly correlated
365 LTR26D 1 * 0.0 Weakly correlated
366 LTR2752 1 n.s 43.0 Highly correlated
367 LTR27D 1 n.s 43.0 Highly correlated
368 LTR27E 1 n.s 43.0 Highly correlated
369 LTR28 1 n.s 43.0 Highly correlated
370 LTR30 1 n.s 28.9 Weakly correlated
371 LTR33C 1 n.s 99.0 Weakly correlated
372 LTR35A 1 ** 43.0 Highly correlated
373 LTR35B 1 * 43.0 Highly correlated
374 LTR37-int 1 n.s 99.0 Weakly correlated
375 LTR37A 1 n.s 99.0 Weakly correlated
376 LTR38 1 n.s 74.0 Weakly correlated
377 LTR38-int 1 * 74.0 Weakly correlated
378 LTR3B 1 * 28.9 Weakly correlated
379 LTR3B_ 1 n.s 28.9 Weakly correlated
380 LTR4 1 * 28.9 Weakly correlated
381 LTR40A1 1 n.s 99.0 Weakly correlated
382 LTR40c 1 n.s 99.0 Weakly correlated
383 LTR41B 1 n.s 99.0 Weakly correlated
384 LTR42 1 n.s 74.0 Weakly correlated
385 LTR45B 1 n.s 74.0 Weakly correlated
386 LTR46 1 n.s 43.0 Highly correlated
387 LTR46-int 1 n.s 74.0 Weakly correlated
388 LTR49 1 n.s 74.0 Weakly correlated
389 LTR51 1 n.s 74.0 Weakly correlated
390 LTR53-int 1 n.s 99.0 Weakly correlated
391 LTR54 1 n.s 74.0 Weakly correlated
392 LTR5_Hs 1 n.s 0.0 Weakly correlated
393 LTR61 1 * 43.0 Highly correlated
394 LTR65 1 n.s 99.0 Weakly correlated
395 LTR72 1 * 74.0 Weakly correlated
396 LTR75 1 n.s 99.0 Weakly correlated
397 LTR78B 1 n.s 99.0 Weakly correlated
398 LTR79 1 n.s 99.0 Weakly correlated
399 LTR7C 1 n.s 28.9 Weakly correlated
400 LTR84b 1 n.s 99.0 Weakly correlated
401 LTR88a 1 n.s 99.0 Weakly correlated
402 LTR8A 1 n.s 43.0 Highly correlated
403 LTR8B 1 n.s 43.0 Highly correlated
404 LTR90A 1 * 99.0 Weakly correlated
405 LTR91 1 * 99.0 Weakly correlated
406 LTR9D 1 n.s 43.0 Highly correlated
407 MER110A 1 n.s 99.0 Weakly correlated
408 MER21B 1 n.s 99.0 Weakly correlated
409 MER31B 1 n.s 99.0 Weakly correlated
410 MER34 1 n.s 87.0 Weakly correlated
411 MER39B 1 n.s 74.0 Weakly correlated
412 MER41B 1 n.s 74.0 Weakly correlated
413 MER48 1 * 28.9 Weakly correlated
414 MER4D 1 n.s 74.0 Weakly correlated
415 MER4D0 1 n.s 74.0 Weakly correlated
416 MER50B 1 n.s 43.0 Highly correlated
417 MER51B 1 n.s 43.0 Highly correlated
418 MER52-int 1 n.s 99.0 Weakly correlated
419 MER52C 1 n.s 74.0 Weakly correlated
420 MER57-int 1 n.s 87.0 Weakly correlated
421 MER61-int 1 n.s 43.0 Highly correlated
422 MER61B 1 n.s 43.0 Highly correlated
423 MER61C 1 n.s 43.0 Highly correlated
424 MER65C 1 n.s 74.0 Weakly correlated
425 MER67A 1 n.s 99.0 Weakly correlated
426 MER73 1 n.s 87.0 Weakly correlated
427 MER83A-int 1 * 99.0 Weakly correlated
428 MER83B-int 1 n.s 99.0 Weakly correlated
429 MER87 1 * 43.0 Highly correlated
430 MER92D 1 * 99.0 Weakly correlated
431 MLT1-int 1 * 99.0 Weakly correlated
432 MLT1A1-int 1 n.s 87.0 Weakly correlated
433 MLT1D-int 1 n.s 99.0 Weakly correlated
434 MLT1E1 1 n.s 99.0 Weakly correlated
435 MLT1E3 1 n.s 99.0 Weakly correlated
436 MLT1G-int 1 n.s 99.0 Weakly correlated
437 MLT1I-int 1 n.s 99.0 Weakly correlated
438 MLT1J-int 1 n.s 99.0 Weakly correlated
439 MLT2B5 1 n.s 87.0 Weakly correlated
440 MLT2E 1 n.s 99.0 Weakly correlated
441 MSTB-int 1 n.s 43.0 Highly correlated
442 MSTB1-int 1 n.s 74.0 Weakly correlated
443 MamGypLTR2c 1 n.s 99.0 Weakly correlated
444 Penelope1_Vert 1 n.s 319.0 Weakly correlated
445 Plat_L3 1 n.s 99.0 Weakly correlated
446 SVA_D 1 n.s 15.2 Weakly correlated
447 SVA_F 1 n.s 0.0 Weakly correlated
448 X7B_LINE 1 n.s 319.0 Weakly correlated
449 X9_LINE 1 * 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1PA7 682 **** 74.0 Weakly correlated
2 L1M1 523 **** 74.0 Weakly correlated
3 L1PB1 515 **** 74.0 Weakly correlated
4 L1PA6 458 **** 28.9 Weakly correlated
5 L1PA5 371 **** 19.6 Weakly correlated
6 L1PA13 319 **** 74.0 Weakly correlated
7 L1PA10 314 **** 74.0 Weakly correlated
8 L1MA2 287 **** 74.0 Weakly correlated
9 L1PA15 269 **** 74.0 Weakly correlated
10 L1MA3 256 **** 74.0 Weakly correlated
11 L1PREC2 209 **** 43.0 Highly correlated
12 L1PA11 185 **** 74.0 Weakly correlated
13 L1PBa 182 **** 74.0 Weakly correlated
14 L1P2 174 **** 28.9 Weakly correlated
15 L1PA8 162 **** 74.0 Weakly correlated
16 L1M2 158 **** 99.0 Weakly correlated
17 L1MA1 152 **** 74.0 Weakly correlated
18 L1MA4A 143 **** 87.0 Weakly correlated
19 L1PA16 136 **** 74.0 Weakly correlated
20 L1PA14 134 **** 74.0 Weakly correlated
21 L1PA4 125 **** 19.6 Weakly correlated
22 L1M4 114 **** 99.0 Weakly correlated
23 L1MEc 112 **** 99.0 Weakly correlated
24 L1MA4 107 **** 87.0 Weakly correlated
25 L1MA9 100 **** 99.0 Weakly correlated
26 L1PA8A 95 **** 74.0 Weakly correlated
27 L1M4c 87 **** 99.0 Weakly correlated
28 L1P3 84 **** 74.0 Weakly correlated
29 L1MA5 67 **** 87.0 Weakly correlated
30 L1MCa 67 **** 99.0 Weakly correlated
31 L1PA15-16 63 **** 74.0 Weakly correlated
32 L1PB3 56 **** 74.0 Weakly correlated
33 L1ME1 53 n.s 99.0 Weakly correlated
34 L1MEf 51 **** 99.0 Weakly correlated
35 L1PA3 50 n.s 19.6 Weakly correlated
36 L1PB2 48 **** 74.0 Weakly correlated
37 L1MA8 47 **** 87.0 Weakly correlated
38 L1MA6 47 **** 87.0 Weakly correlated
39 L1MA7 44 **** 87.0 Weakly correlated
40 L1PA12 43 **** 74.0 Weakly correlated
41 L1MDa 42 **** 99.0 Weakly correlated
42 L1PB4 42 **** 99.0 Weakly correlated
43 L1MB7 39 n.s 99.0 Weakly correlated
44 L1PA17 38 **** 74.0 Weakly correlated
45 L1MA5A 37 **** 87.0 Weakly correlated
46 L1PBa1 37 **** 74.0 Weakly correlated
47 L1MC1 34 n.s 99.0 Weakly correlated
48 MIRb 34 n.s 99.0 Weakly correlated
49 L1MB3 33 n.s 99.0 Weakly correlated
50 L1P4a 30 **** 74.0 Weakly correlated
51 L1MEg 28 n.s 99.0 Weakly correlated
52 L1MB2 28 ** 99.0 Weakly correlated
53 L1M3f 26 **** 87.0 Weakly correlated
54 L2a 26 n.s 99.0 Weakly correlated
55 L1MEd 25 n.s 99.0 Weakly correlated
56 L2c 24 n.s 99.0 Weakly correlated
57 L1P1 24 ** 19.6 Weakly correlated
58 L1MD1 23 n.s 99.0 Weakly correlated
59 L1M4b 22 ** 99.0 Weakly correlated
60 MIR 21 n.s 99.0 Weakly correlated
61 L1MD2 21 n.s 99.0 Weakly correlated
62 L1MB4 18 n.s 99.0 Weakly correlated
63 MLT1A0 18 n.s 99.0 Weakly correlated
64 L1MB1 17 n.s 99.0 Weakly correlated
65 L2b 16 n.s 99.0 Weakly correlated
66 L1M3c 16 **** 99.0 Weakly correlated
67 L1MB8 15 n.s 99.0 Weakly correlated
68 L1M2c 15 **** 87.0 Weakly correlated
69 L1ME2 14 n.s 99.0 Weakly correlated
70 L1M2a 14 **** 87.0 Weakly correlated
71 L1PA2 14 n.s 15.2 Weakly correlated
72 L1PBb 14 **** 74.0 Weakly correlated
73 L1MB5 14 n.s 99.0 Weakly correlated
74 THE1B-int 14 n.s 43.0 Highly correlated
75 MIR3 11 n.s 99.0 Weakly correlated
76 L1M4a2 11 ** 99.0 Weakly correlated
77 L1M5 11 n.s 99.0 Weakly correlated
78 HERVL-int 11 n.s 74.0 Weakly correlated
79 MLT1F2 11 n.s 99.0 Weakly correlated
80 L1M3b 10 **** 99.0 Weakly correlated
81 MLT1D 9 n.s 99.0 Weakly correlated
82 L1ME2z 9 n.s 99.0 Weakly correlated
83 L1ME3A 9 n.s 99.0 Weakly correlated
84 L1M3de 9 **** 99.0 Weakly correlated
85 L1MA10 9 n.s 99.0 Weakly correlated
86 L1M3e 9 *** 99.0 Weakly correlated
87 L2 9 n.s 99.0 Weakly correlated
88 L1M3 8 n.s 99.0 Weakly correlated
89 L1MC4 8 n.s 99.0 Weakly correlated
90 L1MC2 8 n.s 99.0 Weakly correlated
91 L1PB 8 * 74.0 Weakly correlated
92 MSTB 7 n.s 43.0 Highly correlated
93 MLT1H 7 n.s 99.0 Weakly correlated
94 L1HS 7 n.s 8.6 Weakly correlated
95 MLT1K 7 n.s 99.0 Weakly correlated
96 L1M6 6 n.s 99.0 Weakly correlated
97 L3 6 n.s 99.0 Weakly correlated
98 MLT1B 6 n.s 99.0 Weakly correlated
99 L1M2b 6 **** 87.0 Weakly correlated
100 L1MD 6 n.s 99.0 Weakly correlated
101 MER52A 6 n.s 74.0 Weakly correlated
102 MLT1N2 6 n.s 99.0 Weakly correlated
103 L1MC3 6 n.s 99.0 Weakly correlated
104 L1M4a1 6 n.s 99.0 Weakly correlated
105 L1MC 5 n.s 99.0 Weakly correlated
106 MIRc 5 n.s 99.0 Weakly correlated
107 THE1A-int 5 n.s 43.0 Highly correlated
108 L1MEi 5 n.s 99.0 Weakly correlated
109 L1MC5 5 n.s 99.0 Weakly correlated
110 THE1D 5 n.s 43.0 Highly correlated
111 MLT2B2 5 n.s 99.0 Weakly correlated
112 L1ME3B 4 n.s 99.0 Weakly correlated
113 MLT2B1 4 n.s 99.0 Weakly correlated
114 HAL1 4 n.s 99.0 Weakly correlated
115 LTR33 4 n.s 99.0 Weakly correlated
116 MLT1I 4 n.s 99.0 Weakly correlated
117 ERVL-E-int 4 n.s 99.0 Weakly correlated
118 L1ME3Cz 4 n.s 99.0 Weakly correlated
119 L1MDb 4 n.s 99.0 Weakly correlated
120 MLT1J 4 n.s 99.0 Weakly correlated
121 LTR12C 4 n.s 19.6 Weakly correlated
122 MSTA 4 n.s 43.0 Highly correlated
123 AluJr 4 n.s 74.0 Weakly correlated
124 L1MCc 4 n.s 99.0 Weakly correlated
125 L1MC4a 3 n.s 99.0 Weakly correlated
126 L1ME3G 3 n.s 99.0 Weakly correlated
127 ERV3-16A3_I-int 3 n.s 99.0 Weakly correlated
128 MER74A 3 n.s 99.0 Weakly correlated
129 L1P4 3 n.s 74.0 Weakly correlated
130 L1P4b 3 ** 74.0 Weakly correlated
131 MLT2F 3 n.s 99.0 Weakly correlated
132 L1MD3 3 n.s 99.0 Weakly correlated
133 MLT1C 3 n.s 94.0 Weakly correlated
134 LTR43 3 ** 74.0 Weakly correlated
135 L1M2a1 3 ** 79.0 Weakly correlated
136 LTR16A 3 n.s 99.0 Weakly correlated
137 LTR36 3 * 74.0 Weakly correlated
138 LTR41 3 n.s 99.0 Weakly correlated
139 L1M3d 3 * 99.0 Weakly correlated
140 LTR16C 3 n.s 99.0 Weakly correlated
141 L1MEj 3 n.s 99.0 Weakly correlated
142 L1M7 2 n.s 99.0 Weakly correlated
143 L1ME3D 2 n.s 99.0 Weakly correlated
144 L3b 2 n.s 99.0 Weakly correlated
145 LTR54B 2 n.s 74.0 Weakly correlated
146 MamGypsy2-I 2 n.s 99.0 Weakly correlated
147 THE1C-int 2 n.s 43.0 Highly correlated
148 HERVL74-int 2 * 99.0 Weakly correlated
149 LTR16A1 2 n.s 99.0 Weakly correlated
150 LTR50 2 n.s 99.0 Weakly correlated
151 MER57A-int 2 n.s 43.0 Highly correlated
152 SVA_B 2 n.s 15.2 Weakly correlated
153 AluSx3 2 n.s 74.0 Weakly correlated
154 L1M3a 2 n.s 99.0 Weakly correlated
155 L1ME3E 2 n.s 99.0 Weakly correlated
156 L1P4e 2 * 74.0 Weakly correlated
157 MLT1H2 2 n.s 99.0 Weakly correlated
158 LTR12_ 2 n.s 28.9 Weakly correlated
159 MamRTE1 2 n.s 99.0 Weakly correlated
160 MLT1J1 2 n.s 99.0 Weakly correlated
161 L1ME4c 2 n.s 99.0 Weakly correlated
162 L1P4d 2 * 74.0 Weakly correlated
163 MER52D 2 n.s 74.0 Weakly correlated
164 MLT1E1A 2 n.s 99.0 Weakly correlated
165 MLT1G1 2 n.s 99.0 Weakly correlated
166 FLAM_A 1 n.s 74.0 Weakly correlated
167 L1MCb 1 n.s 99.0 Weakly correlated
168 LTR33B 1 n.s 99.0 Weakly correlated
169 LTR38A1 1 * 74.0 Weakly correlated
170 LTR75 1 n.s 99.0 Weakly correlated
171 MER21-int 1 n.s 99.0 Weakly correlated
172 MER21C 1 n.s 99.0 Weakly correlated
173 MER50 1 n.s 43.0 Highly correlated
174 MLT1A 1 n.s 99.0 Weakly correlated
175 MLT1A1 1 n.s 87.0 Weakly correlated
176 MLT1G 1 n.s 99.0 Weakly correlated
177 MLT1H1 1 n.s 99.0 Weakly correlated
178 MLT2B5 1 n.s 87.0 Weakly correlated
179 LOR1-int 1 n.s 74.0 Weakly correlated
180 LTR107_Mam 1 n.s 99.0 Weakly correlated
181 LTR21B 1 ** 28.9 Weakly correlated
182 LTR41C 1 n.s 99.0 Weakly correlated
183 LTR78B 1 n.s 99.0 Weakly correlated
184 MER66B 1 n.s 43.0 Highly correlated
185 MLT1E2 1 n.s 99.0 Weakly correlated
186 MLT1F 1 n.s 99.0 Weakly correlated
187 MLT2E 1 n.s 99.0 Weakly correlated
188 AluJo 1 n.s 74.0 Weakly correlated
189 CR1_Mam 1 n.s 99.0 Weakly correlated
190 HAL1b 1 n.s 99.0 Weakly correlated
191 HERVL40-int 1 n.s 99.0 Weakly correlated
192 L1MEb 1 n.s 99.0 Weakly correlated
193 L4_A_Mam 1 n.s 99.0 Weakly correlated
194 LTR38B 1 n.s 74.0 Weakly correlated
195 LTR8 1 n.s 43.0 Highly correlated
196 LTR85a 1 n.s 99.0 Weakly correlated
197 LTR9 1 n.s 43.0 Highly correlated
198 MLT1M 1 n.s 99.0 Weakly correlated
199 THE1B 1 n.s 43.0 Highly correlated
200 AluSz 1 n.s 74.0 Weakly correlated
201 LTR18A 1 * 43.0 Highly correlated
202 AluSx 1 n.s 74.0 Weakly correlated
203 AluY 1 n.s 74.0 Weakly correlated
204 ERV24B_Prim-int 1 n.s 74.0 Weakly correlated
205 LOR1b 1 n.s 74.0 Weakly correlated
206 LTR102_Mam 1 n.s 99.0 Weakly correlated
207 MER77B 1 n.s 99.0 Weakly correlated
208 AluSc8 1 n.s 74.0 Weakly correlated
209 HERV16-int 1 n.s 99.0 Weakly correlated
210 L1ME4b 1 n.s 99.0 Weakly correlated
211 LTR16B2 1 n.s 99.0 Weakly correlated
212 LTR51 1 n.s 74.0 Weakly correlated
213 LTR52-int 1 * 99.0 Weakly correlated
214 LTR67B 1 n.s 99.0 Weakly correlated
215 LTR72 1 * 74.0 Weakly correlated
216 MER34 1 n.s 87.0 Weakly correlated
217 MER4B-int 1 n.s 99.0 Weakly correlated
218 MER54A 1 n.s 87.0 Weakly correlated
219 MSTA-int 1 n.s 43.0 Highly correlated
220 MSTB1 1 n.s 74.0 Weakly correlated
221 X7A_LINE 1 n.s 319.0 Weakly correlated
222 L1ME3 1 n.s 99.0 Weakly correlated
223 LTR16E2 1 n.s 99.0 Weakly correlated
224 LTR21C 1 *** 28.9 Weakly correlated
225 LTR26C 1 n.s 0.0 Weakly correlated
226 LTR32 1 n.s 43.0 Highly correlated
227 MLT1L 1 n.s 99.0 Weakly correlated
228 AluSq 1 n.s 74.0 Weakly correlated
229 FRAM 1 n.s 74.0 Weakly correlated
230 L1MC5a 1 n.s 99.0 Weakly correlated
231 L1ME4a 1 n.s 99.0 Weakly correlated
232 L4_C_Mam 1 n.s 99.0 Weakly correlated
233 LTR16 1 n.s 99.0 Weakly correlated
234 LTR38 1 n.s 74.0 Weakly correlated
235 LTR53-int 1 n.s 99.0 Weakly correlated
236 MER68 1 n.s 99.0 Weakly correlated
237 MER90a 1 n.s 99.0 Weakly correlated
238 MER92D 1 * 99.0 Weakly correlated
239 MIR1_Amn 1 n.s 319.0 Weakly correlated
240 MLT1G3 1 n.s 99.0 Weakly correlated
241 MamGypLTR1b 1 n.s 99.0 Weakly correlated
242 THE1D-int 1 n.s 28.9 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 HERVL-INT 74.0 Weakly correlated
2 L1M1 74.0 Weakly correlated
3 L1M2 99.0 Weakly correlated
4 L1M3 99.0 Weakly correlated
5 L1M3C 99.0 Weakly correlated
6 L1M3E 99.0 Weakly correlated
7 L1M3F 87.0 Weakly correlated
8 L1M4 99.0 Weakly correlated
9 L1M4A1 99.0 Weakly correlated
10 L1M4A2 99.0 Weakly correlated
11 L1M4B 99.0 Weakly correlated
12 L1M4C 99.0 Weakly correlated
13 L1M5 99.0 Weakly correlated
14 L1M6 99.0 Weakly correlated
15 L1MC3 99.0 Weakly correlated
16 L1MCA 99.0 Weakly correlated
17 L1MD 99.0 Weakly correlated
18 L1MDA 99.0 Weakly correlated
19 L1MEC 99.0 Weakly correlated
20 L1MED 99.0 Weakly correlated
21 L1MEF 99.0 Weakly correlated
22 L1MEG 99.0 Weakly correlated
23 L1P1 19.6 Weakly correlated
24 L1P2 28.9 Weakly correlated
25 L1P4A 74.0 Weakly correlated
26 L1PA15-16 74.0 Weakly correlated
27 L1PB 74.0 Weakly correlated
28 L1PBA 74.0 Weakly correlated
29 L1PBB 74.0 Weakly correlated
30 L2 99.0 Weakly correlated
31 L2A 99.0 Weakly correlated
32 L3 99.0 Weakly correlated
33 MLT1A0 99.0 Weakly correlated
34 MLT1D 99.0 Weakly correlated
35 MSTB 43.0 Highly correlated