ZRdb KZFP & Repeats
...

Human_ZNF440

  • Protein
    Zinc finger protein 440
  • Length
    595
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    43.0 Mya
  • Time of Changing in binding specificity
    28.9 Mya
  • Uniprot_ID
  • NCBI_ID
Sequence:
MDPVAFKDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSLGKRWKDQNIEYEHQNPRRNFRSLIEEKVNEIKDDSHCGETFTPVPDDRLNFQEKKASPEVKSCESFVCGEVGLGNSSFNMNIRGDIGHKAYEYQEYGPKPCKCQQPKKAFRYRPSFRTQERDHTGEKPNACKVCGKTFISHSSVRRHMVMHSGDGPYKCKFCGKAFHCLRLYLIHERIHTGEKPCECKQCGKSFSYSATHRIHKRTHTGEKPYEYQECGKAFHSPRSYRRHERIHMGEKAYQCKECGKAFTCPRYVRIHERTHSRKNLYECKQCGKALSSLTSFQTHVRLHSGERPYECKICGKDFCSVNSFQRHEKIHSGEKPYKCKQCGKAFPHSSSLRYHERTHTGEKPYECKQCGKAFRSASHLRVHGRTHTGEKPYECKECGKAFRYVNNLQSHERTQTHIRIHSGERRYKCKICGKGFYCPKSFQRHEKTHTGEKLYECKQRSVVPSVVPVPFDIMKGLTLERSPINASNVGKPSELCQSFECMVGLTLKRNPMSVSNDGKPSDLPHTFEYVVGHTMERSPMHVRNVGNPSDLPRTFEFMKGHKHT
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 4..86
2 dec2h2 144..166
3 C2h2 172..194
4 C2h2 200..222
5 C2h2 228..250
6 dec2h2 256..278
7 C2h2 284..306
8 C2h2 312..334
9 C2h2 340..362
10 C2h2 368..390
11 C2h2 396..418
12 C2h2 424..448
13 C2h2 458..480
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function DNA-binding transcription repressor activity, RNA polymerase II-specific
4 Molecular Function metal ion binding
5 Molecular Function RNA polymerase II transcription regulatory region sequence-specific DNA binding
6 Biological Process negative regulation of transcription by RNA polymerase II
7 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
...
Reverse:
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MER11A 241 **** 28.9 Highly correlated
2 HERVK9-int 76 **** 28.9 Highly correlated
3 L2a 32 n.s 99.0 Weakly correlated
4 MIRb 28 n.s 99.0 Weakly correlated
5 L1PA14 23 **** 74.0 Weakly correlated
6 LTR13 23 **** 19.6 Weakly correlated
7 MER4A1 23 **** 74.0 Weakly correlated
8 AluJo 22 * 74.0 Weakly correlated
9 MIR 22 n.s 99.0 Weakly correlated
10 AluY 21 n.s 74.0 Weakly correlated
11 MER4-int 20 **** 74.0 Weakly correlated
12 L1PB1 19 ** 74.0 Weakly correlated
13 L2c 19 n.s 99.0 Weakly correlated
14 AluJb 15 n.s 74.0 Weakly correlated
15 AluJr 15 n.s 74.0 Weakly correlated
16 L1ME1 15 n.s 99.0 Weakly correlated
17 L2 13 n.s 99.0 Weakly correlated
18 AluSx 12 n.s 74.0 Weakly correlated
19 AluSx1 12 n.s 74.0 Weakly correlated
20 AluSp 11 n.s 74.0 Weakly correlated
21 MIRc 11 n.s 99.0 Weakly correlated
22 L1M3 10 **** 99.0 Weakly correlated
23 L1ME2 10 ** 99.0 Weakly correlated
24 L1ME3G 10 ** 99.0 Weakly correlated
25 L1ME4b 10 ** 99.0 Weakly correlated
26 L1PREC2 10 * 43.0 Moderately correlated
27 L2b 10 n.s 99.0 Weakly correlated
28 L3 10 n.s 99.0 Weakly correlated
29 MLT1J 10 *** 99.0 Weakly correlated
30 AluSz 9 n.s 74.0 Weakly correlated
31 L1MB7 9 n.s 99.0 Weakly correlated
32 AluSz6 8 n.s 74.0 Weakly correlated
33 HAL1 8 n.s 99.0 Weakly correlated
34 L1MB8 8 n.s 99.0 Weakly correlated
35 L1MC4 8 n.s 99.0 Weakly correlated
36 L1MEf 8 n.s 99.0 Weakly correlated
37 L1M4 7 n.s 99.0 Weakly correlated
38 L1MEc 7 n.s 99.0 Weakly correlated
39 L4_A_Mam 7 **** 99.0 Weakly correlated
40 MIR3 7 n.s 99.0 Weakly correlated
41 L1M5 6 n.s 99.0 Weakly correlated
42 L1MB3 6 n.s 99.0 Weakly correlated
43 L1MEd 6 n.s 99.0 Weakly correlated
44 L1PA15 6 n.s 74.0 Weakly correlated
45 LTR5B 6 **** 28.9 Highly correlated
46 MamRTE1 6 *** 99.0 Weakly correlated
47 AluJr4 5 n.s 74.0 Weakly correlated
48 AluSc8 5 n.s 74.0 Weakly correlated
49 AluSq2 5 n.s 74.0 Weakly correlated
50 L1M1 5 n.s 74.0 Weakly correlated
51 L1MA3 5 n.s 74.0 Weakly correlated
52 L1MA4A 5 n.s 87.0 Weakly correlated
53 L1MD2 5 n.s 99.0 Weakly correlated
54 L1ME4a 5 n.s 99.0 Weakly correlated
55 L1MEg 5 n.s 99.0 Weakly correlated
56 L1PA16 5 n.s 74.0 Weakly correlated
57 AluSc 4 n.s 74.0 Weakly correlated
58 L1M2 4 n.s 99.0 Weakly correlated
59 L1MA8 4 n.s 87.0 Weakly correlated
60 L1MB4 4 n.s 99.0 Weakly correlated
61 L1MB5 4 n.s 99.0 Weakly correlated
62 L1MC3 4 n.s 99.0 Weakly correlated
63 L1MCa 4 n.s 99.0 Weakly correlated
64 L1MD1 4 n.s 99.0 Weakly correlated
65 L1ME3A 4 n.s 99.0 Weakly correlated
66 L1ME3F 4 * 99.0 Weakly correlated
67 LTR18A 4 **** 43.0 Moderately correlated
68 LTR54B 4 **** 74.0 Weakly correlated
69 LTR8 4 * 43.0 Moderately correlated
70 MLT1H 4 n.s 99.0 Weakly correlated
71 AluSg 3 n.s 74.0 Weakly correlated
72 AluYc 3 * 74.0 Weakly correlated
73 ERVL-E-int 3 n.s 99.0 Weakly correlated
74 FLAM_C 3 n.s 74.0 Weakly correlated
75 HERVL18-int 3 *** 43.0 Moderately correlated
76 L1MA4 3 n.s 87.0 Weakly correlated
77 L1MA9 3 n.s 99.0 Weakly correlated
78 L1MC1 3 n.s 99.0 Weakly correlated
79 L1MC5a 3 n.s 99.0 Weakly correlated
80 L1MDa 3 n.s 99.0 Weakly correlated
81 L1ME3Cz 3 n.s 99.0 Weakly correlated
82 L1PA7 3 n.s 74.0 Weakly correlated
83 L1PB2 3 n.s 74.0 Weakly correlated
84 L1PB4 3 n.s 99.0 Weakly correlated
85 LTR10A 3 **** 28.9 Highly correlated
86 LTR12C 3 n.s 19.6 Weakly correlated
87 LTR35 3 **** 43.0 Moderately correlated
88 LTR41B 3 **** 99.0 Weakly correlated
89 LTR76 3 **** 74.0 Weakly correlated
90 MLT1B 3 n.s 99.0 Weakly correlated
91 MLT1C 3 n.s 94.0 Weakly correlated
92 MLT1D 3 n.s 99.0 Weakly correlated
93 MLT1I 3 n.s 99.0 Weakly correlated
94 AluSx3 2 n.s 74.0 Weakly correlated
95 AluSx4 2 n.s 74.0 Weakly correlated
96 AluYj4 2 * 0.0 Weakly correlated
97 AmnSINE1 2 ** 319.0 Weakly correlated
98 ERV3-16A3_I-int 2 n.s 99.0 Weakly correlated
99 ERVL-B4-int 2 n.s 99.0 Weakly correlated
100 FAM 2 * 87.0 Weakly correlated
101 FRAM 2 n.s 74.0 Weakly correlated
102 HAL1ME 2 n.s 99.0 Weakly correlated
103 HUERS-P3-int 2 * 43.0 Moderately correlated
104 L1MB1 2 n.s 99.0 Weakly correlated
105 L1MC4a 2 n.s 99.0 Weakly correlated
106 L1MC5 2 n.s 99.0 Weakly correlated
107 L1MD 2 n.s 99.0 Weakly correlated
108 L1MD3 2 n.s 99.0 Weakly correlated
109 L1ME3 2 n.s 99.0 Weakly correlated
110 L1ME3B 2 n.s 99.0 Weakly correlated
111 L1P1 2 n.s 19.6 Weakly correlated
112 L1P4 2 n.s 74.0 Weakly correlated
113 L1PA5 2 n.s 19.6 Weakly correlated
114 L1PA8 2 n.s 74.0 Weakly correlated
115 L1PA8A 2 n.s 74.0 Weakly correlated
116 L3b 2 n.s 99.0 Weakly correlated
117 L4_C_Mam 2 n.s 99.0 Weakly correlated
118 LFSINE_Vert 2 ** 319.0 Weakly correlated
119 LOR1-int 2 * 74.0 Weakly correlated
120 LTR12D 2 ** 19.6 Weakly correlated
121 LTR35A 2 **** 43.0 Moderately correlated
122 LTR4 2 **** 28.9 Highly correlated
123 LTR50 2 * 99.0 Weakly correlated
124 LTR5_Hs 2 * 0.0 Weakly correlated
125 LTR64 2 *** 74.0 Weakly correlated
126 MER4D1 2 * 74.0 Weakly correlated
127 MER83C 2 **** 43.0 Moderately correlated
128 MLT1F 2 n.s 99.0 Weakly correlated
129 MLT1J1 2 n.s 99.0 Weakly correlated
130 MLT1J2 2 n.s 99.0 Weakly correlated
131 MLT1K 2 n.s 99.0 Weakly correlated
132 MLT1L 2 n.s 99.0 Weakly correlated
133 MLT1M 2 ** 99.0 Weakly correlated
134 MLT2B2 2 * 99.0 Weakly correlated
135 MLT2D 2 n.s 99.0 Weakly correlated
136 MSTA 2 n.s 43.0 Moderately correlated
137 MamGypLTR3 2 *** 99.0 Weakly correlated
138 MamSINE1 2 * 99.0 Weakly correlated
139 THE1B 2 n.s 43.0 Moderately correlated
140 THE1D 2 n.s 43.0 Moderately correlated
141 Alu 1 * 74.0 Weakly correlated
142 AluSc5 1 n.s 74.0 Weakly correlated
143 AluSg4 1 n.s 74.0 Weakly correlated
144 AluSg7 1 n.s 74.0 Weakly correlated
145 AluSq4 1 n.s 74.0 Weakly correlated
146 AluYa5 1 n.s 15.2 Weakly correlated
147 AluYh3 1 n.s 15.2 Weakly correlated
148 AluYk4 1 * 15.2 Weakly correlated
149 AluYm1 1 n.s 19.6 Weakly correlated
150 CR1_Mam 1 * 99.0 Weakly correlated
151 FLAM_A 1 n.s 74.0 Weakly correlated
152 HAL1M8 1 n.s 99.0 Weakly correlated
153 HERV9-int 1 n.s 28.9 Highly correlated
154 HERV9NC-int 1 n.s 19.6 Weakly correlated
155 HERVIP10F-int 1 n.s 28.9 Highly correlated
156 HERVIP10FH-int 1 * 28.9 Highly correlated
157 HERVK-int 1 n.s 28.9 Highly correlated
158 Harlequin-int 1 n.s 74.0 Weakly correlated
159 L1M3f 1 n.s 87.0 Weakly correlated
160 L1M6 1 n.s 99.0 Weakly correlated
161 L1M6B 1 ** 99.0 Weakly correlated
162 L1M8 1 n.s 99.0 Weakly correlated
163 L1MA1 1 n.s 74.0 Weakly correlated
164 L1MA2 1 n.s 74.0 Weakly correlated
165 L1MA6 1 n.s 87.0 Weakly correlated
166 L1MA7 1 n.s 87.0 Weakly correlated
167 L1MCb 1 n.s 99.0 Weakly correlated
168 L1MCc 1 n.s 99.0 Weakly correlated
169 L1ME2z 1 n.s 99.0 Weakly correlated
170 L1ME3E 1 n.s 99.0 Weakly correlated
171 L1MEh 1 n.s 99.0 Weakly correlated
172 L1P4d 1 ** 74.0 Weakly correlated
173 L1PA11 1 n.s 74.0 Weakly correlated
174 L1PA15-16 1 n.s 74.0 Weakly correlated
175 L1PA17 1 n.s 74.0 Weakly correlated
176 L1PA2 1 n.s 15.2 Weakly correlated
177 L1PA4 1 n.s 19.6 Weakly correlated
178 L1PA6 1 n.s 28.9 Highly correlated
179 L1PB 1 n.s 74.0 Weakly correlated
180 L1PB3 1 n.s 74.0 Weakly correlated
181 L1PBa 1 n.s 74.0 Weakly correlated
182 L1PBa1 1 n.s 74.0 Weakly correlated
183 L4_B_Mam 1 n.s 99.0 Weakly correlated
184 LTR10B2 1 *** 28.9 Highly correlated
185 LTR10E 1 ** 28.9 Highly correlated
186 LTR12_ 1 * 28.9 Highly correlated
187 LTR16B1 1 * 99.0 Weakly correlated
188 LTR16B2 1 n.s 99.0 Weakly correlated
189 LTR16D 1 * 99.0 Weakly correlated
190 LTR16E1 1 n.s 99.0 Weakly correlated
191 LTR18C 1 *** 43.0 Moderately correlated
192 LTR1A2 1 n.s 43.0 Moderately correlated
193 LTR1E 1 * 43.0 Moderately correlated
194 LTR23 1 * 74.0 Weakly correlated
195 LTR26 1 * 74.0 Weakly correlated
196 LTR29 1 * 43.0 Moderately correlated
197 LTR2C 1 ** 19.6 Weakly correlated
198 LTR33A 1 n.s 99.0 Weakly correlated
199 LTR33A_ 1 n.s 99.0 Weakly correlated
200 LTR33C 1 * 99.0 Weakly correlated
201 LTR37-int 1 n.s 99.0 Weakly correlated
202 LTR37A 1 n.s 99.0 Weakly correlated
203 LTR40b 1 * 99.0 Weakly correlated
204 LTR41 1 * 99.0 Weakly correlated
205 LTR45C 1 ** 99.0 Weakly correlated
206 LTR47A 1 * 74.0 Weakly correlated
207 LTR47A2 1 ** 74.0 Weakly correlated
208 LTR49 1 n.s 74.0 Weakly correlated
209 LTR49-int 1 n.s 74.0 Weakly correlated
210 LTR53B 1 ** 99.0 Weakly correlated
211 LTR54 1 * 74.0 Weakly correlated
212 LTR61 1 ** 43.0 Moderately correlated
213 LTR67B 1 n.s 99.0 Weakly correlated
214 LTR71B 1 ** 43.0 Moderately correlated
215 LTR81B 1 * 99.0 Weakly correlated
216 LTR85b 1 * 99.0 Weakly correlated
217 LTR88a 1 ** 99.0 Weakly correlated
218 LTR88c 1 ** 99.0 Weakly correlated
219 LTR89 1 * 99.0 Weakly correlated
220 LTR8A 1 n.s 43.0 Moderately correlated
221 LTR8B 1 n.s 43.0 Moderately correlated
222 LTR9 1 * 43.0 Moderately correlated
223 MER101-int 1 n.s 74.0 Weakly correlated
224 MER110A 1 ** 99.0 Weakly correlated
225 MER11C 1 n.s 19.6 Weakly correlated
226 MER31B 1 n.s 99.0 Weakly correlated
227 MER34 1 * 87.0 Weakly correlated
228 MER41A 1 n.s 74.0 Weakly correlated
229 MER41B 1 n.s 74.0 Weakly correlated
230 MER49 1 n.s 43.0 Moderately correlated
231 MER4A1_ 1 * 74.0 Weakly correlated
232 MER4B-int 1 n.s 99.0 Weakly correlated
233 MER50 1 n.s 43.0 Moderately correlated
234 MER57B2 1 * 43.0 Moderately correlated
235 MER57C2 1 ** 87.0 Weakly correlated
236 MER57F 1 ** 74.0 Weakly correlated
237 MER61-int 1 n.s 43.0 Moderately correlated
238 MER61A 1 * 43.0 Moderately correlated
239 MER61C 1 ** 43.0 Moderately correlated
240 MER65-int 1 n.s 87.0 Weakly correlated
241 MER65B 1 *** 74.0 Weakly correlated
242 MER65C 1 * 74.0 Weakly correlated
243 MER66C 1 ** 43.0 Moderately correlated
244 MER68 1 n.s 99.0 Weakly correlated
245 MER83B-int 1 ** 99.0 Weakly correlated
246 MER90 1 * 99.0 Weakly correlated
247 MER90a 1 * 99.0 Weakly correlated
248 MIR1_Amn 1 n.s 319.0 Weakly correlated
249 MLT1-int 1 ** 99.0 Weakly correlated
250 MLT1A0-int 1 n.s 99.0 Weakly correlated
251 MLT1D-int 1 * 99.0 Weakly correlated
252 MLT1F1 1 n.s 99.0 Weakly correlated
253 MLT1F2 1 n.s 99.0 Weakly correlated
254 MLT1G 1 n.s 99.0 Weakly correlated
255 MLT1H-int 1 * 99.0 Weakly correlated
256 MLT1H1 1 n.s 99.0 Weakly correlated
257 MLT1N2 1 n.s 99.0 Weakly correlated
258 MLT2B1 1 n.s 99.0 Weakly correlated
259 MLT2E 1 ** 99.0 Weakly correlated
260 MSTA-int 1 n.s 43.0 Moderately correlated
261 MSTB 1 n.s 43.0 Moderately correlated
262 MSTB1 1 n.s 74.0 Weakly correlated
263 MSTB1-int 1 ** 74.0 Weakly correlated
264 MSTB2 1 n.s 74.0 Weakly correlated
265 MamGypLTR3a 1 * 99.0 Weakly correlated
266 MamGypsy2-I 1 n.s 99.0 Weakly correlated
267 MamGypsy2-LTR 1 ** 99.0 Weakly correlated
268 MamRep605 1 n.s 99.0 Weakly correlated
269 PABL_A-int 1 * 74.0 Weakly correlated
270 PRIMA4-int 1 * 74.0 Weakly correlated
271 SVA_F 1 n.s 0.0 Weakly correlated
272 THE1A 1 n.s 43.0 Moderately correlated
273 UCON49 1 **** 0.0 Weakly correlated
274 X6A_LINE 1 ** 99.0 Weakly correlated
275 X9_LINE 1 ** 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 MER11A 230 **** 28.9 Highly correlated
2 HERVK9-int 72 **** 28.9 Highly correlated
3 L1PA14 21 **** 74.0 Weakly correlated
4 MER4A1 21 **** 74.0 Weakly correlated
5 L2a 15 n.s 99.0 Weakly correlated
6 L1PB1 15 n.s 74.0 Weakly correlated
7 AluJo 14 n.s 74.0 Weakly correlated
8 AluY 12 n.s 74.0 Weakly correlated
9 AluJb 10 n.s 74.0 Weakly correlated
10 L1ME1 10 n.s 99.0 Weakly correlated
11 AluJr 9 n.s 74.0 Weakly correlated
12 MIR 8 n.s 99.0 Weakly correlated
13 L1PREC2 8 n.s 43.0 Moderately correlated
14 LTR13 8 **** 19.6 Weakly correlated
15 L2 8 n.s 99.0 Weakly correlated
16 MIRb 7 n.s 99.0 Weakly correlated
17 AluSx1 6 n.s 74.0 Weakly correlated
18 L1ME3G 6 n.s 99.0 Weakly correlated
19 L1MB8 6 n.s 99.0 Weakly correlated
20 L1ME2 6 n.s 99.0 Weakly correlated
21 MIRc 5 n.s 99.0 Weakly correlated
22 L2b 5 n.s 99.0 Weakly correlated
23 L3 5 n.s 99.0 Weakly correlated
24 L2c 5 n.s 99.0 Weakly correlated
25 HAL1 5 n.s 99.0 Weakly correlated
26 L1MEf 5 n.s 99.0 Weakly correlated
27 AluSz 5 n.s 74.0 Weakly correlated
28 L1ME4a 4 n.s 99.0 Weakly correlated
29 AluSc8 4 n.s 74.0 Weakly correlated
30 AluSp 4 n.s 74.0 Weakly correlated
31 L1MC4 4 n.s 99.0 Weakly correlated
32 LTR54B 4 **** 74.0 Weakly correlated
33 L1M5 4 n.s 99.0 Weakly correlated
34 AluSx 4 n.s 74.0 Weakly correlated
35 L1MB5 3 n.s 99.0 Weakly correlated
36 LTR5B 3 *** 28.9 Highly correlated
37 L1MA3 3 n.s 74.0 Weakly correlated
38 L1MB3 3 n.s 99.0 Weakly correlated
39 L1MC3 3 n.s 99.0 Weakly correlated
40 MLT1J 3 n.s 99.0 Weakly correlated
41 L1PB2 3 n.s 74.0 Weakly correlated
42 L1MEc 3 n.s 99.0 Weakly correlated
43 L1M1 3 n.s 74.0 Weakly correlated
44 L1MB7 3 n.s 99.0 Weakly correlated
45 MLT1D 3 n.s 99.0 Weakly correlated
46 AluSx4 2 n.s 74.0 Weakly correlated
47 MIR3 2 n.s 99.0 Weakly correlated
48 L1MC5a 2 n.s 99.0 Weakly correlated
49 L1PA16 2 n.s 74.0 Weakly correlated
50 MamSINE1 2 * 99.0 Weakly correlated
51 AluJr4 2 n.s 74.0 Weakly correlated
52 L4_A_Mam 2 n.s 99.0 Weakly correlated
53 LTR41B 2 ** 99.0 Weakly correlated
54 MLT1I 2 n.s 99.0 Weakly correlated
55 L1MD1 2 n.s 99.0 Weakly correlated
56 L1MEd 2 n.s 99.0 Weakly correlated
57 LTR35A 2 **** 43.0 Moderately correlated
58 LTR4 2 **** 28.9 Highly correlated
59 MLT1C 2 n.s 94.0 Weakly correlated
60 ERVL-B4-int 2 n.s 99.0 Weakly correlated
61 FRAM 2 n.s 74.0 Weakly correlated
62 L1MA4A 2 n.s 87.0 Weakly correlated
63 L1ME4b 2 n.s 99.0 Weakly correlated
64 L1MEg 2 n.s 99.0 Weakly correlated
65 LTR76 2 *** 74.0 Weakly correlated
66 AluYc 2 n.s 74.0 Weakly correlated
67 L1MC1 2 n.s 99.0 Weakly correlated
68 L1PA15 2 n.s 74.0 Weakly correlated
69 LTR35 2 **** 43.0 Moderately correlated
70 LTR50 2 * 99.0 Weakly correlated
71 LTR8 2 n.s 43.0 Moderately correlated
72 MER4D1 2 * 74.0 Weakly correlated
73 L1MB4 2 n.s 99.0 Weakly correlated
74 AluYm1 1 n.s 19.6 Weakly correlated
75 ERV3-16A3_I-int 1 n.s 99.0 Weakly correlated
76 HERV9-int 1 n.s 28.9 Highly correlated
77 LTR12C 1 n.s 19.6 Weakly correlated
78 LTR1A2 1 n.s 43.0 Moderately correlated
79 LTR37-int 1 n.s 99.0 Weakly correlated
80 LTR47A2 1 ** 74.0 Weakly correlated
81 LTR71B 1 ** 43.0 Moderately correlated
82 LTR89 1 * 99.0 Weakly correlated
83 MER83C 1 *** 43.0 Moderately correlated
84 MLT1-int 1 ** 99.0 Weakly correlated
85 THE1D 1 n.s 43.0 Moderately correlated
86 X6A_LINE 1 ** 99.0 Weakly correlated
87 AluSq4 1 n.s 74.0 Weakly correlated
88 HAL1M8 1 n.s 99.0 Weakly correlated
89 HAL1ME 1 n.s 99.0 Weakly correlated
90 L1M2 1 n.s 99.0 Weakly correlated
91 L1MCb 1 n.s 99.0 Weakly correlated
92 L1MD 1 n.s 99.0 Weakly correlated
93 L1PA7 1 n.s 74.0 Weakly correlated
94 L1PB4 1 n.s 99.0 Weakly correlated
95 LTR53B 1 ** 99.0 Weakly correlated
96 MER41A 1 n.s 74.0 Weakly correlated
97 MLT1D-int 1 * 99.0 Weakly correlated
98 AluSg 1 n.s 74.0 Weakly correlated
99 Harlequin-int 1 n.s 74.0 Weakly correlated
100 L1MA4 1 n.s 87.0 Weakly correlated
101 L1MA7 1 n.s 87.0 Weakly correlated
102 L1MD3 1 n.s 99.0 Weakly correlated
103 L1PA8 1 n.s 74.0 Weakly correlated
104 L1PBa 1 n.s 74.0 Weakly correlated
105 L1PBa1 1 n.s 74.0 Weakly correlated
106 L4_C_Mam 1 n.s 99.0 Weakly correlated
107 LTR16D 1 * 99.0 Weakly correlated
108 LTR9 1 * 43.0 Moderately correlated
109 MER57C2 1 ** 87.0 Weakly correlated
110 MER68 1 n.s 99.0 Weakly correlated
111 MER90a 1 * 99.0 Weakly correlated
112 MLT2B2 1 n.s 99.0 Weakly correlated
113 MSTB1-int 1 ** 74.0 Weakly correlated
114 AluSc 1 n.s 74.0 Weakly correlated
115 AluSq2 1 n.s 74.0 Weakly correlated
116 AluSz6 1 n.s 74.0 Weakly correlated
117 AluYk4 1 * 15.2 Weakly correlated
118 CR1_Mam 1 * 99.0 Weakly correlated
119 L1MA1 1 n.s 74.0 Weakly correlated
120 L1MDa 1 n.s 99.0 Weakly correlated
121 L1ME3A 1 n.s 99.0 Weakly correlated
122 L1P4 1 n.s 74.0 Weakly correlated
123 MER90 1 * 99.0 Weakly correlated
124 MLT1A0-int 1 n.s 99.0 Weakly correlated
125 ERVL-E-int 1 n.s 99.0 Weakly correlated
126 HERVL18-int 1 * 43.0 Moderately correlated
127 L1MA8 1 n.s 87.0 Weakly correlated
128 L1ME3Cz 1 n.s 99.0 Weakly correlated
129 LTR16B1 1 * 99.0 Weakly correlated
130 LTR61 1 ** 43.0 Moderately correlated
131 MER34 1 * 87.0 Weakly correlated
132 MER49 1 n.s 43.0 Moderately correlated
133 MER66C 1 ** 43.0 Moderately correlated
134 MLT2E 1 ** 99.0 Weakly correlated
135 AluSg7 1 n.s 74.0 Weakly correlated
136 HERVIP10F-int 1 n.s 28.9 Highly correlated
137 L1MCa 1 n.s 99.0 Weakly correlated
138 L1MD2 1 n.s 99.0 Weakly correlated
139 L1ME3F 1 n.s 99.0 Weakly correlated
140 L1PA8A 1 n.s 74.0 Weakly correlated
141 L3b 1 n.s 99.0 Weakly correlated
142 LTR33A_ 1 n.s 99.0 Weakly correlated
143 LTR49-int 1 n.s 74.0 Weakly correlated
144 LTR64 1 ** 74.0 Weakly correlated
145 LTR88a 1 ** 99.0 Weakly correlated
146 LTR88c 1 ** 99.0 Weakly correlated
147 MER101-int 1 n.s 74.0 Weakly correlated
148 MER4-int 1 n.s 74.0 Weakly correlated
149 MER4A1_ 1 * 74.0 Weakly correlated
150 MLT1F 1 n.s 99.0 Weakly correlated
151 MamGypLTR3 1 ** 99.0 Weakly correlated
152 MamRTE1 1 n.s 99.0 Weakly correlated
153 THE1B 1 n.s 43.0 Moderately correlated
154 AluSg4 1 n.s 74.0 Weakly correlated
155 FAM 1 n.s 87.0 Weakly correlated
156 HERVK-int 1 n.s 28.9 Highly correlated
157 L1ME3 1 n.s 99.0 Weakly correlated
158 L1MEh 1 n.s 99.0 Weakly correlated
159 L1PA2 1 n.s 15.2 Weakly correlated
160 LOR1-int 1 n.s 74.0 Weakly correlated
161 X9_LINE 1 ** 319.0 Weakly correlated
162 FLAM_A 1 n.s 74.0 Weakly correlated
163 HUERS-P3-int 1 n.s 43.0 Moderately correlated
164 L1MC4a 1 n.s 99.0 Weakly correlated
165 LTR10B2 1 *** 28.9 Highly correlated
166 LTR18A 1 ** 43.0 Moderately correlated
167 LTR2C 1 ** 19.6 Weakly correlated
168 MER57B2 1 * 43.0 Moderately correlated
169 MER61A 1 * 43.0 Moderately correlated
170 MER61C 1 ** 43.0 Moderately correlated
171 MLT1F2 1 n.s 99.0 Weakly correlated
172 MLT1H1 1 n.s 99.0 Weakly correlated
173 MLT2D 1 n.s 99.0 Weakly correlated
174 MamGypsy2-I 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 LTR13 19.6 Weakly correlated
2 MER11A 28.9 Highly correlated
3 MER4A1 74.0 Weakly correlated