ZRdb KZFP & Repeats
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Human_ZNF44

  • Protein
    Zinc finger protein 44
  • Length
    663
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    69.0 Mya
  • Time of Changing in binding specificity
    43.0 Mya
  • Uniprot_ID
    P15621
  • NCBI_ID
    51710
Sequence:
MALCYGTFWGYPKMLEAANLMEGLVDIGPWVTLPRGQPEVLEWGLPKDQDSVAFEDVAVNFTHEEWALLGPSQKNLYRDVMRETIRNLNCIGMKWENQNIDDQHQNLRRNPRCDVVERFGKSKDGSQCGETLSQIRNSIVNKNTPARVDACGSSVNGEVIMGHSSLNCYIRVDTGHKHRECHEYAEKSYTHKQCGKGLSYRHSFQTCERPHTGKKPYDCKECGKTFSSPGNLRRHMVVKGGDGPYKCELCGKAFFWPSLLRMHERTHTGEKPYECKQCSKAFPVYSSYLRHEKIHTGEKPYECKQCSKAFPDYSSYLRHERTHTGEKPYKCKQCGKAFSVSGSLRVHERIHTGEKPYTCKQCGKAFCHLGSFQRHMIMHSGDGPHKCKICGKGFDFPGSARIHEGTHTLEKPYECKQCGKLLSHRSSFRRHMMAHTGDGPHKCTVCGKAFDSPSVFQRHERTHTGEKPYECKQCGKAFRTSSSLRKHETTHTGEQPYKCKCGKAFSDLFSFQSHETTHSEEEPYECKECGKAFSSFKYFCRHERTHSEEKSYECQICGKAFSRFSYLKTHERTHTAEKPYECKQCRKAFFWPSFLLRHERTHTGERPYECKHCGKAFSRSSFCREHERTHTGEKPYECKECGKAFSSLSSFNRHKRTHWKDIL
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 52..138
2 C2h2 189..211
3 dec2h2 217..239
4 C2h2 245..267
5 C2h2 273..295
6 C2h2 301..323
7 C2h2 329..351
8 C2h2 357..379
9 C2h2 385..407
10 C2h2 413..435
11 C2h2 441..463
12 C2h2 469..491
13 C2h2 497..518
14 C2h2 524..546
15 C2h2 552..574
16 C2h2 580..602
17 C2h2 608..630
18 C2h2 636..658
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II transcription regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 LTR8B 146 **** 43.0 Highly correlated
2 LTR8A 62 **** 43.0 Highly correlated
3 THE1B-int 48 **** 43.0 Highly correlated
4 THE1C-int 44 **** 43.0 Highly correlated
5 THE1D-int 39 **** 28.9 Weakly correlated
6 L2a 33 n.s 99.0 Weakly correlated
7 MIRb 27 n.s 99.0 Weakly correlated
8 L2b 26 * 99.0 Weakly correlated
9 THE1B 24 **** 43.0 Highly correlated
10 LTR8 22 **** 43.0 Highly correlated
11 AluJb 21 n.s 74.0 Weakly correlated
12 MIR 20 n.s 99.0 Weakly correlated
13 MSTA-int 19 **** 43.0 Highly correlated
14 LTR13 18 **** 19.6 Weakly correlated
15 AluY 17 n.s 74.0 Weakly correlated
16 AluSx 15 n.s 74.0 Weakly correlated
17 HAL1 15 ** 99.0 Weakly correlated
18 L1MEd 15 ** 99.0 Weakly correlated
19 L2 15 n.s 99.0 Weakly correlated
20 THE1C 14 **** 43.0 Highly correlated
21 AluSx1 13 n.s 74.0 Weakly correlated
22 MSTA 13 ** 43.0 Highly correlated
23 AluSz 12 n.s 74.0 Weakly correlated
24 MIR3 12 n.s 99.0 Weakly correlated
25 MIRc 12 n.s 99.0 Weakly correlated
26 L2c 11 n.s 99.0 Weakly correlated
27 AluJo 10 n.s 74.0 Weakly correlated
28 AluSp 10 n.s 74.0 Weakly correlated
29 AluSq2 10 n.s 74.0 Weakly correlated
30 AluJr 9 n.s 74.0 Weakly correlated
31 THE1A-int 9 **** 43.0 Highly correlated
32 THE1D 8 * 43.0 Highly correlated
33 L1M5 7 n.s 99.0 Weakly correlated
34 L1MB3 7 n.s 99.0 Weakly correlated
35 L1MB8 7 n.s 99.0 Weakly correlated
36 L1MC3 7 n.s 99.0 Weakly correlated
37 AluSc8 6 n.s 74.0 Weakly correlated
38 AluSz6 6 n.s 74.0 Weakly correlated
39 L1M2 6 n.s 99.0 Weakly correlated
40 L1MB5 6 n.s 99.0 Weakly correlated
41 L1ME2 6 n.s 99.0 Weakly correlated
42 L1PB1 6 n.s 74.0 Weakly correlated
43 L3 6 n.s 99.0 Weakly correlated
44 AluSx3 5 n.s 74.0 Weakly correlated
45 L1M4 5 n.s 99.0 Weakly correlated
46 L1MD1 5 n.s 99.0 Weakly correlated
47 L1ME1 5 n.s 99.0 Weakly correlated
48 L1ME4b 5 n.s 99.0 Weakly correlated
49 L1MEc 5 n.s 99.0 Weakly correlated
50 LTR16C 5 ** 99.0 Weakly correlated
51 LTR50 5 **** 99.0 Weakly correlated
52 LTR9 5 **** 43.0 Highly correlated
53 MSTB 5 n.s 43.0 Highly correlated
54 MamRTE1 5 ** 99.0 Weakly correlated
55 THE1A 5 ** 43.0 Highly correlated
56 AluSc 4 n.s 74.0 Weakly correlated
57 AluSg 4 n.s 74.0 Weakly correlated
58 HAL1ME 4 n.s 99.0 Weakly correlated
59 L1M7 4 ** 99.0 Weakly correlated
60 L1MC1 4 n.s 99.0 Weakly correlated
61 L1MC4a 4 n.s 99.0 Weakly correlated
62 L1MEg 4 n.s 99.0 Weakly correlated
63 L1PA16 4 n.s 74.0 Weakly correlated
64 L1PA2 4 n.s 15.2 Weakly correlated
65 L1PA6 4 n.s 28.9 Weakly correlated
66 L1PA7 4 n.s 74.0 Weakly correlated
67 LTR10A 4 **** 28.9 Weakly correlated
68 MER52A 4 * 74.0 Weakly correlated
69 MLT1E2 4 * 99.0 Weakly correlated
70 MLT1F 4 * 99.0 Weakly correlated
71 MLT1H 4 n.s 99.0 Weakly correlated
72 MLT1K 4 n.s 99.0 Weakly correlated
73 MSTB-int 4 ** 43.0 Highly correlated
74 AluYa5 3 * 15.2 Weakly correlated
75 FAM 3 ** 87.0 Weakly correlated
76 HERVL18-int 3 *** 43.0 Highly correlated
77 L1M1 3 n.s 74.0 Weakly correlated
78 L1M2a 3 ** 87.0 Weakly correlated
79 L1MB7 3 n.s 99.0 Weakly correlated
80 L1MC 3 n.s 99.0 Weakly correlated
81 L1MC4 3 n.s 99.0 Weakly correlated
82 L1MD 3 n.s 99.0 Weakly correlated
83 L1MD2 3 n.s 99.0 Weakly correlated
84 L1ME3 3 n.s 99.0 Weakly correlated
85 L1ME3Cz 3 n.s 99.0 Weakly correlated
86 L1MEi 3 n.s 99.0 Weakly correlated
87 L1PA15 3 n.s 74.0 Weakly correlated
88 L1PA17 3 n.s 74.0 Weakly correlated
89 L1PA3 3 n.s 19.6 Weakly correlated
90 L1PA5 3 n.s 19.6 Weakly correlated
91 LOR1a 3 *** 74.0 Weakly correlated
92 LTR12C 3 n.s 19.6 Weakly correlated
93 LTR14B 3 **** 28.9 Weakly correlated
94 LTR18A 3 **** 43.0 Highly correlated
95 LTR18B 3 **** 43.0 Highly correlated
96 LTR26 3 *** 74.0 Weakly correlated
97 LTR26C 3 **** 0.0 Weakly correlated
98 LTR40a 3 ** 99.0 Weakly correlated
99 MER77 3 ** 99.0 Weakly correlated
100 MLT1A0 3 n.s 99.0 Weakly correlated
101 MLT1B 3 n.s 99.0 Weakly correlated
102 MLT1D 3 n.s 99.0 Weakly correlated
103 MSTB1 3 n.s 74.0 Weakly correlated
104 ERVL-E-int 2 n.s 99.0 Weakly correlated
105 FRAM 2 n.s 74.0 Weakly correlated
106 HAL1b 2 n.s 99.0 Weakly correlated
107 HUERS-P3-int 2 * 43.0 Highly correlated
108 L1M4a2 2 n.s 99.0 Weakly correlated
109 L1MA3 2 n.s 74.0 Weakly correlated
110 L1MA5 2 n.s 87.0 Weakly correlated
111 L1MA8 2 n.s 87.0 Weakly correlated
112 L1MB2 2 n.s 99.0 Weakly correlated
113 L1MB4 2 n.s 99.0 Weakly correlated
114 L1ME3B 2 n.s 99.0 Weakly correlated
115 L1ME3E 2 n.s 99.0 Weakly correlated
116 L1ME3G 2 n.s 99.0 Weakly correlated
117 L1ME4a 2 n.s 99.0 Weakly correlated
118 L1MEb 2 * 99.0 Weakly correlated
119 L1MEh 2 n.s 99.0 Weakly correlated
120 L1P1 2 n.s 19.6 Weakly correlated
121 L1P4 2 n.s 74.0 Weakly correlated
122 L1PA11 2 n.s 74.0 Weakly correlated
123 L1PA8 2 n.s 74.0 Weakly correlated
124 L1PREC2 2 n.s 43.0 Highly correlated
125 L4_A_Mam 2 n.s 99.0 Weakly correlated
126 LTR10B1 2 **** 28.9 Weakly correlated
127 LTR16A 2 n.s 99.0 Weakly correlated
128 LTR25-int 2 * 43.0 Highly correlated
129 LTR27D 2 *** 43.0 Highly correlated
130 LTR33 2 n.s 99.0 Weakly correlated
131 LTR4 2 **** 28.9 Weakly correlated
132 LTR40b 2 ** 99.0 Weakly correlated
133 LTR49-int 2 n.s 74.0 Weakly correlated
134 LTR54 2 ** 74.0 Weakly correlated
135 LTR78 2 n.s 99.0 Weakly correlated
136 LTR78B 2 * 99.0 Weakly correlated
137 MER11A 2 n.s 28.9 Weakly correlated
138 MER31B 2 * 99.0 Weakly correlated
139 MER50 2 n.s 43.0 Highly correlated
140 MER51E 2 **** 43.0 Highly correlated
141 MER52D 2 * 74.0 Weakly correlated
142 MER57B2 2 ** 43.0 Highly correlated
143 MER72B 2 **** 43.0 Highly correlated
144 MLT1C 2 n.s 94.0 Weakly correlated
145 MLT1E3 2 * 99.0 Weakly correlated
146 MLT1G1 2 n.s 99.0 Weakly correlated
147 MLT1L 2 n.s 99.0 Weakly correlated
148 MLT1N2 2 n.s 99.0 Weakly correlated
149 MLT2C1 2 * 99.0 Weakly correlated
150 MLT2C2 2 ** 99.0 Weakly correlated
151 MSTC 2 n.s 74.0 Weakly correlated
152 MSTD 2 n.s 74.0 Weakly correlated
153 AluSc5 1 n.s 74.0 Weakly correlated
154 AluSg4 1 n.s 74.0 Weakly correlated
155 AluSq 1 n.s 74.0 Weakly correlated
156 AluSq4 1 n.s 74.0 Weakly correlated
157 AluSx4 1 n.s 74.0 Weakly correlated
158 AluYc 1 n.s 74.0 Weakly correlated
159 AluYc3 1 * 74.0 Weakly correlated
160 AluYh9 1 **** 15.2 Weakly correlated
161 AluYi6 1 ** 15.2 Weakly correlated
162 AmnSINE1 1 * 319.0 Weakly correlated
163 ERV3-16A3_I-int 1 n.s 99.0 Weakly correlated
164 ERVL-B4-int 1 n.s 99.0 Weakly correlated
165 FLAM_A 1 n.s 74.0 Weakly correlated
166 FLAM_C 1 n.s 74.0 Weakly correlated
167 HERV16-int 1 n.s 99.0 Weakly correlated
168 HERV9N-int 1 n.s 19.6 Weakly correlated
169 HERVE-int 1 n.s 19.6 Weakly correlated
170 HERVH48-int 1 * 28.9 Weakly correlated
171 HERVK-int 1 n.s 28.9 Weakly correlated
172 HERVK14-int 1 * 28.9 Weakly correlated
173 HERVK22-int 1 n.s 43.0 Highly correlated
174 HERVK9-int 1 n.s 28.9 Weakly correlated
175 HERVL40-int 1 n.s 99.0 Weakly correlated
176 HERVL74-int 1 * 99.0 Weakly correlated
177 HUERS-P1-int 1 n.s 43.0 Highly correlated
178 L1MA1 1 n.s 74.0 Weakly correlated
179 L1MA4 1 n.s 87.0 Weakly correlated
180 L1MA4A 1 n.s 87.0 Weakly correlated
181 L1MA9 1 n.s 99.0 Weakly correlated
182 L1MB1 1 n.s 99.0 Weakly correlated
183 L1MC5a 1 n.s 99.0 Weakly correlated
184 L1MCa 1 n.s 99.0 Weakly correlated
185 L1MCc 1 n.s 99.0 Weakly correlated
186 L1MD3 1 n.s 99.0 Weakly correlated
187 L1ME3A 1 n.s 99.0 Weakly correlated
188 L1ME4c 1 n.s 99.0 Weakly correlated
189 L1MEg1 1 * 99.0 Weakly correlated
190 L1MEj 1 n.s 99.0 Weakly correlated
191 L1P2 1 n.s 28.9 Weakly correlated
192 L1P3 1 n.s 74.0 Weakly correlated
193 L1PA13 1 n.s 74.0 Weakly correlated
194 L1PA15-16 1 n.s 74.0 Weakly correlated
195 L1PA4 1 n.s 19.6 Weakly correlated
196 L1PA8A 1 n.s 74.0 Weakly correlated
197 L1PB2 1 n.s 74.0 Weakly correlated
198 L1PB4 1 n.s 99.0 Weakly correlated
199 L1PBa 1 n.s 74.0 Weakly correlated
200 L1PBa1 1 n.s 74.0 Weakly correlated
201 L4_B_Mam 1 n.s 99.0 Weakly correlated
202 L4_C_Mam 1 n.s 99.0 Weakly correlated
203 LOR1b 1 n.s 74.0 Weakly correlated
204 LTR101_Mam 1 * 99.0 Weakly correlated
205 LTR102_Mam 1 * 99.0 Weakly correlated
206 LTR10B2 1 *** 28.9 Weakly correlated
207 LTR10G 1 ** 28.9 Weakly correlated
208 LTR12B 1 * 28.9 Weakly correlated
209 LTR12E 1 ** 19.6 Weakly correlated
210 LTR13A 1 * 28.9 Weakly correlated
211 LTR16 1 n.s 99.0 Weakly correlated
212 LTR16A1 1 n.s 99.0 Weakly correlated
213 LTR16B1 1 n.s 99.0 Weakly correlated
214 LTR16B2 1 n.s 99.0 Weakly correlated
215 LTR16D 1 * 99.0 Weakly correlated
216 LTR17 1 n.s 28.9 Weakly correlated
217 LTR19C 1 ** 43.0 Highly correlated
218 LTR2 1 n.s 28.9 Weakly correlated
219 LTR26E 1 *** 74.0 Weakly correlated
220 LTR2752 1 * 43.0 Highly correlated
221 LTR28C 1 * 43.0 Highly correlated
222 LTR29 1 * 43.0 Highly correlated
223 LTR33A 1 n.s 99.0 Weakly correlated
224 LTR33B 1 * 99.0 Weakly correlated
225 LTR35A 1 *** 43.0 Highly correlated
226 LTR41B 1 * 99.0 Weakly correlated
227 LTR42 1 ** 74.0 Weakly correlated
228 LTR45C 1 * 99.0 Weakly correlated
229 LTR47A 1 * 74.0 Weakly correlated
230 LTR48 1 n.s 74.0 Weakly correlated
231 LTR55 1 * 99.0 Weakly correlated
232 LTR59 1 *** 43.0 Highly correlated
233 LTR5B 1 n.s 28.9 Weakly correlated
234 LTR64 1 ** 74.0 Weakly correlated
235 LTR67B 1 n.s 99.0 Weakly correlated
236 LTR76 1 ** 74.0 Weakly correlated
237 LTR77 1 ** 94.0 Weakly correlated
238 LTR82A 1 * 99.0 Weakly correlated
239 MER110-int 1 * 99.0 Weakly correlated
240 MER110A 1 * 99.0 Weakly correlated
241 MER21-int 1 n.s 99.0 Weakly correlated
242 MER21A 1 n.s 74.0 Weakly correlated
243 MER21B 1 n.s 99.0 Weakly correlated
244 MER21C 1 n.s 99.0 Weakly correlated
245 MER31A 1 n.s 87.0 Weakly correlated
246 MER34B 1 * 87.0 Weakly correlated
247 MER34C2 1 * 74.0 Weakly correlated
248 MER34D 1 ** 74.0 Weakly correlated
249 MER4A1 1 n.s 74.0 Weakly correlated
250 MER4B-int 1 n.s 99.0 Weakly correlated
251 MER4D 1 n.s 74.0 Weakly correlated
252 MER50-int 1 n.s 43.0 Highly correlated
253 MER52C 1 * 74.0 Weakly correlated
254 MER57-int 1 n.s 87.0 Weakly correlated
255 MER57E3 1 ** 74.0 Weakly correlated
256 MER61-int 1 n.s 43.0 Highly correlated
257 MER61C 1 ** 43.0 Highly correlated
258 MER65C 1 * 74.0 Weakly correlated
259 MER66-int 1 n.s 43.0 Highly correlated
260 MER72 1 * 43.0 Highly correlated
261 MER76 1 * 99.0 Weakly correlated
262 MER77B 1 n.s 99.0 Weakly correlated
263 MER83 1 * 43.0 Highly correlated
264 MER83B-int 1 ** 99.0 Weakly correlated
265 MER83C 1 ** 43.0 Highly correlated
266 MER89-int 1 * 99.0 Weakly correlated
267 MER92D 1 ** 99.0 Weakly correlated
268 MER9a3 1 * 28.9 Weakly correlated
269 MLT1A1 1 n.s 87.0 Weakly correlated
270 MLT1B-int 1 * 99.0 Weakly correlated
271 MLT1F2 1 n.s 99.0 Weakly correlated
272 MLT1I 1 n.s 99.0 Weakly correlated
273 MLT1J 1 n.s 99.0 Weakly correlated
274 MLT1J-int 1 n.s 99.0 Weakly correlated
275 MLT1J2 1 n.s 99.0 Weakly correlated
276 MLT1M 1 n.s 99.0 Weakly correlated
277 MLT1O 1 n.s 99.0 Weakly correlated
278 MLT2B1 1 n.s 99.0 Weakly correlated
279 MLT2D 1 n.s 99.0 Weakly correlated
280 MLT2F 1 n.s 99.0 Weakly correlated
281 MSTB1-int 1 * 74.0 Weakly correlated
282 MamGypsy2-I 1 n.s 99.0 Weakly correlated
283 MamGypsy2-LTR 1 ** 99.0 Weakly correlated
284 MamRep605 1 n.s 99.0 Weakly correlated
285 SVA_C 1 n.s 15.2 Weakly correlated
286 SVA_F 1 n.s 0.0 Weakly correlated
287 THE1-int 1 ** 43.0 Highly correlated
288 X6B_LINE 1 ** 99.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 LTR8B 139 **** 43.0 Highly correlated
2 LTR8A 58 **** 43.0 Highly correlated
3 THE1B-int 44 **** 43.0 Highly correlated
4 THE1C-int 42 **** 43.0 Highly correlated
5 THE1D-int 35 **** 28.9 Weakly correlated
6 LTR8 21 **** 43.0 Highly correlated
7 L2a 19 n.s 99.0 Weakly correlated
8 MIRb 17 n.s 99.0 Weakly correlated
9 MSTA-int 16 **** 43.0 Highly correlated
10 L2b 13 n.s 99.0 Weakly correlated
11 HAL1 13 * 99.0 Weakly correlated
12 MIR 10 n.s 99.0 Weakly correlated
13 L1MEd 10 n.s 99.0 Weakly correlated
14 LTR13 10 **** 19.6 Weakly correlated
15 THE1A-int 9 **** 43.0 Highly correlated
16 L2 9 n.s 99.0 Weakly correlated
17 THE1B 9 n.s 43.0 Highly correlated
18 AluJb 7 n.s 74.0 Weakly correlated
19 MIRc 7 n.s 99.0 Weakly correlated
20 L1MB3 6 n.s 99.0 Weakly correlated
21 L1MC3 6 n.s 99.0 Weakly correlated
22 L1PB1 6 n.s 74.0 Weakly correlated
23 THE1D 5 n.s 43.0 Highly correlated
24 AluJr 5 n.s 74.0 Weakly correlated
25 L1MB8 5 n.s 99.0 Weakly correlated
26 L2c 4 n.s 99.0 Weakly correlated
27 L1M5 4 n.s 99.0 Weakly correlated
28 L1MB5 4 n.s 99.0 Weakly correlated
29 L1MD1 4 n.s 99.0 Weakly correlated
30 MLT1F 4 * 99.0 Weakly correlated
31 MSTB-int 4 ** 43.0 Highly correlated
32 L3 4 n.s 99.0 Weakly correlated
33 L1PA16 4 n.s 74.0 Weakly correlated
34 MLT1K 4 n.s 99.0 Weakly correlated
35 L1MC1 4 n.s 99.0 Weakly correlated
36 L1ME1 4 n.s 99.0 Weakly correlated
37 L1MC 3 n.s 99.0 Weakly correlated
38 L1PA7 3 n.s 74.0 Weakly correlated
39 MLT1D 3 n.s 99.0 Weakly correlated
40 L1MC4a 3 n.s 99.0 Weakly correlated
41 L1ME2 3 n.s 99.0 Weakly correlated
42 L1ME4b 3 n.s 99.0 Weakly correlated
43 L1M1 3 n.s 74.0 Weakly correlated
44 L1M2 3 n.s 99.0 Weakly correlated
45 L1PA15 3 n.s 74.0 Weakly correlated
46 AluSq2 3 n.s 74.0 Weakly correlated
47 L1M7 3 * 99.0 Weakly correlated
48 LOR1a 3 *** 74.0 Weakly correlated
49 LTR40a 3 ** 99.0 Weakly correlated
50 LTR50 3 ** 99.0 Weakly correlated
51 L1MEg 3 n.s 99.0 Weakly correlated
52 LTR26C 3 **** 0.0 Weakly correlated
53 MLT1H 3 n.s 99.0 Weakly correlated
54 L1M4 3 n.s 99.0 Weakly correlated
55 LTR16C 3 n.s 99.0 Weakly correlated
56 L1P4 2 n.s 74.0 Weakly correlated
57 AluJo 2 n.s 74.0 Weakly correlated
58 L1ME3 2 n.s 99.0 Weakly correlated
59 MLT2C1 2 * 99.0 Weakly correlated
60 MLT2C2 2 ** 99.0 Weakly correlated
61 L1MA3 2 n.s 74.0 Weakly correlated
62 MIR3 2 n.s 99.0 Weakly correlated
63 MLT1E2 2 n.s 99.0 Weakly correlated
64 ERVL-E-int 2 n.s 99.0 Weakly correlated
65 HUERS-P3-int 2 * 43.0 Highly correlated
66 L1MB7 2 n.s 99.0 Weakly correlated
67 L1MEb 2 * 99.0 Weakly correlated
68 L1MEi 2 n.s 99.0 Weakly correlated
69 L1PA11 2 n.s 74.0 Weakly correlated
70 LTR26 2 ** 74.0 Weakly correlated
71 L1PA6 2 n.s 28.9 Weakly correlated
72 LTR10B1 2 **** 28.9 Weakly correlated
73 LTR78B 2 * 99.0 Weakly correlated
74 MSTA 2 n.s 43.0 Highly correlated
75 L1MA5 2 n.s 87.0 Weakly correlated
76 L1MA8 2 n.s 87.0 Weakly correlated
77 L1ME3Cz 2 n.s 99.0 Weakly correlated
78 L1PA5 2 n.s 19.6 Weakly correlated
79 AluSx1 2 n.s 74.0 Weakly correlated
80 L1MD 2 n.s 99.0 Weakly correlated
81 L1MEc 2 n.s 99.0 Weakly correlated
82 LTR14B 2 *** 28.9 Weakly correlated
83 MLT1A0 2 n.s 99.0 Weakly correlated
84 THE1A 2 n.s 43.0 Highly correlated
85 THE1C 2 n.s 43.0 Highly correlated
86 L1MB2 2 n.s 99.0 Weakly correlated
87 L1PA8 2 n.s 74.0 Weakly correlated
88 MER77 2 * 99.0 Weakly correlated
89 AluSg 1 n.s 74.0 Weakly correlated
90 AluSq4 1 n.s 74.0 Weakly correlated
91 AluY 1 n.s 74.0 Weakly correlated
92 HERV9N-int 1 n.s 19.6 Weakly correlated
93 HERVL40-int 1 n.s 99.0 Weakly correlated
94 L1M2a 1 n.s 87.0 Weakly correlated
95 L1MD3 1 n.s 99.0 Weakly correlated
96 L1PB2 1 n.s 74.0 Weakly correlated
97 LTR5B 1 n.s 28.9 Weakly correlated
98 MER110A 1 * 99.0 Weakly correlated
99 MER31B 1 n.s 99.0 Weakly correlated
100 MER83C 1 ** 43.0 Highly correlated
101 MamGypsy2-I 1 n.s 99.0 Weakly correlated
102 HERVE-int 1 n.s 19.6 Weakly correlated
103 HERVL74-int 1 * 99.0 Weakly correlated
104 L1ME4a 1 n.s 99.0 Weakly correlated
105 L1PB4 1 n.s 99.0 Weakly correlated
106 L1PBa1 1 n.s 74.0 Weakly correlated
107 LTR16A1 1 n.s 99.0 Weakly correlated
108 MER76 1 * 99.0 Weakly correlated
109 MER77B 1 n.s 99.0 Weakly correlated
110 MLT1I 1 n.s 99.0 Weakly correlated
111 MSTB1 1 n.s 74.0 Weakly correlated
112 MSTC 1 n.s 74.0 Weakly correlated
113 AmnSINE1 1 * 319.0 Weakly correlated
114 FAM 1 n.s 87.0 Weakly correlated
115 L1ME4c 1 n.s 99.0 Weakly correlated
116 L1MEh 1 n.s 99.0 Weakly correlated
117 L1PREC2 1 n.s 43.0 Highly correlated
118 LTR10B2 1 *** 28.9 Weakly correlated
119 LTR27D 1 ** 43.0 Highly correlated
120 LTR78 1 n.s 99.0 Weakly correlated
121 MER31A 1 n.s 87.0 Weakly correlated
122 MER34C2 1 * 74.0 Weakly correlated
123 MER4D 1 n.s 74.0 Weakly correlated
124 MER66-int 1 n.s 43.0 Highly correlated
125 MER92D 1 ** 99.0 Weakly correlated
126 MER9a3 1 * 28.9 Weakly correlated
127 MLT1J2 1 n.s 99.0 Weakly correlated
128 MSTB1-int 1 * 74.0 Weakly correlated
129 MamGypsy2-LTR 1 ** 99.0 Weakly correlated
130 X6B_LINE 1 ** 99.0 Weakly correlated
131 AluSz 1 n.s 74.0 Weakly correlated
132 HERVK14-int 1 * 28.9 Weakly correlated
133 L1M4a2 1 n.s 99.0 Weakly correlated
134 L1PA13 1 n.s 74.0 Weakly correlated
135 LTR102_Mam 1 * 99.0 Weakly correlated
136 LTR18B 1 * 43.0 Highly correlated
137 LTR25-int 1 n.s 43.0 Highly correlated
138 LTR77 1 ** 94.0 Weakly correlated
139 MER11A 1 n.s 28.9 Weakly correlated
140 MER83B-int 1 ** 99.0 Weakly correlated
141 MLT1B 1 n.s 99.0 Weakly correlated
142 MLT1E3 1 n.s 99.0 Weakly correlated
143 MLT1F2 1 n.s 99.0 Weakly correlated
144 MLT1M 1 n.s 99.0 Weakly correlated
145 AluSc 1 n.s 74.0 Weakly correlated
146 AluSz6 1 n.s 74.0 Weakly correlated
147 L1ME3B 1 n.s 99.0 Weakly correlated
148 L1MEj 1 n.s 99.0 Weakly correlated
149 L1P2 1 n.s 28.9 Weakly correlated
150 L1P3 1 n.s 74.0 Weakly correlated
151 L1PA8A 1 n.s 74.0 Weakly correlated
152 L1PBa 1 n.s 74.0 Weakly correlated
153 LTR67B 1 n.s 99.0 Weakly correlated
154 LTR76 1 ** 74.0 Weakly correlated
155 MER50 1 n.s 43.0 Highly correlated
156 MER52A 1 n.s 74.0 Weakly correlated
157 MER83 1 * 43.0 Highly correlated
158 MLT1N2 1 n.s 99.0 Weakly correlated
159 HAL1ME 1 n.s 99.0 Weakly correlated
160 HERV16-int 1 n.s 99.0 Weakly correlated
161 L1MA1 1 n.s 74.0 Weakly correlated
162 L1MA4A 1 n.s 87.0 Weakly correlated
163 L1MB1 1 n.s 99.0 Weakly correlated
164 L1MC5a 1 n.s 99.0 Weakly correlated
165 LTR16 1 n.s 99.0 Weakly correlated
166 LTR33 1 n.s 99.0 Weakly correlated
167 LTR64 1 ** 74.0 Weakly correlated
168 THE1-int 1 ** 43.0 Highly correlated
169 HAL1b 1 n.s 99.0 Weakly correlated
170 HERVL18-int 1 n.s 43.0 Highly correlated
171 L1MA9 1 n.s 99.0 Weakly correlated
172 L1MB4 1 n.s 99.0 Weakly correlated
173 L1PA15-16 1 n.s 74.0 Weakly correlated
174 LTR33B 1 * 99.0 Weakly correlated
175 LTR40b 1 * 99.0 Weakly correlated
176 LTR82A 1 * 99.0 Weakly correlated
177 MER51E 1 ** 43.0 Highly correlated
178 MLT1O 1 n.s 99.0 Weakly correlated
179 MLT2D 1 n.s 99.0 Weakly correlated
180 MamRTE1 1 n.s 99.0 Weakly correlated
181 HERVK9-int 1 n.s 28.9 Weakly correlated
182 L1PA17 1 n.s 74.0 Weakly correlated
183 LTR54 1 * 74.0 Weakly correlated
184 MER110-int 1 * 99.0 Weakly correlated
185 MER21A 1 n.s 74.0 Weakly correlated
186 MER57B2 1 * 43.0 Highly correlated
187 MER89-int 1 * 99.0 Weakly correlated
188 MLT1G1 1 n.s 99.0 Weakly correlated
189 MLT1L 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 LTR13 19.6 Weakly correlated
2 THE1B 43.0 Highly correlated