ZRdb KZFP & Repeats
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Human_ZNF429

  • Protein
    Zinc finger protein 429
  • Length
    674
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    28.9 Mya
  • Time of Changing in binding specificity
    28.9 Mya
  • Uniprot_ID
    Q86V71
  • NCBI_ID
    353088
Sequence:
MGPLTFTDVAIEFSLEEWQCLDTAQQNLYRNVMLENYRNLVFLGIAVSKPDLITCLEKEKEPCKMKRHEMVDEPPVVCSHFAEDFWPEQDIKDSFQKVTLRRYDKRGHENLQLRKGYKTVGDCKLYKGGYNGLNQCLTLTQSKMYHCDIYVKVFYAFSNADRYKTRHTGKKPFQCKKCGKSFCMLSQLTQHKKIHIRENTYRCKEFGNAFNQSSALTNHKRIYVGEKHYRCEECGKAFNHYSTLTNHKRIHTGEKPYKCKECGKAFSRYSTLTTHKRIHSGEKPYKCDECGKTFSISSTFTKHKIIHTEEKPYKCKECGKAFNRSSTLTSHKRIHTGEKPYKCEECGKAFNWSSTLTKHKVIHTGEKPYKCEECGKAFNQSSRLTRHKKIHTGEEPYKFEKCGRVFTCSSTLTQDKKIHTGEKPYNCEECGKVFTYSSTLTRHKRIHTEEKPYKCNECGKAFNRSSHLTSHRRIHTGEKPYKCEECGKAFKQSSNLNSHKKIHSGEKPYKCEECGKAFILSSRLTQHKKIHTGEKPYKCEECGKAFNRSSRLTQHKKIHTGEKPYKCKQCDKAFTHSSNLSSHKKIHSGEKPYKCEECGKAFNRSSRLTQHKKIHTREKPYKCEECAKAFTRSSRLTQHKKIHRMGVVAHACNPSTLGGRGGRITRSGDRDRPG
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
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# Domain name Pos
1 KRAB 4..75
2 dec2h2 145..167
3 C2h2 173..195
4 dec2h2 201..223
5 C2h2 229..251
6 C2h2 257..279
7 C2h2 285..307
8 C2h2 313..335
9 C2h2 341..363
10 C2h2 369..391
11 dec2h2 397..419
12 C2h2 425..447
13 C2h2 453..475
14 C2h2 481..503
15 C2h2 509..531
16 C2h2 537..559
17 C2h2 565..587
18 C2h2 593..615
19 C2h2 621..643
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluSx 265 **** 74.0 Weakly correlated
2 L1PB1 248 **** 74.0 Weakly correlated
3 AluSz 243 **** 74.0 Weakly correlated
4 AluSx1 241 **** 74.0 Weakly correlated
5 L1PA16 237 **** 74.0 Weakly correlated
6 AluJb 174 **** 74.0 Weakly correlated
7 MIRb 152 **** 99.0 Weakly correlated
8 AluSz6 112 **** 74.0 Weakly correlated
9 L2a 103 n.s 99.0 Weakly correlated
10 MIR 101 ** 99.0 Weakly correlated
11 L1PBa1 95 **** 74.0 Weakly correlated
12 AluJr 81 *** 74.0 Weakly correlated
13 AluSq2 81 **** 74.0 Weakly correlated
14 L2c 76 n.s 99.0 Weakly correlated
15 AluSc 75 **** 74.0 Weakly correlated
16 AluSg 73 **** 74.0 Weakly correlated
17 L1MB7 65 **** 99.0 Weakly correlated
18 AluJo 61 * 74.0 Weakly correlated
19 AluSp 60 ** 74.0 Weakly correlated
20 L1PA15 60 **** 74.0 Weakly correlated
21 MIR3 58 **** 99.0 Weakly correlated
22 L2b 56 n.s 99.0 Weakly correlated
23 L1PBa 54 **** 74.0 Weakly correlated
24 AluSx3 48 **** 74.0 Weakly correlated
25 AluY 47 n.s 74.0 Weakly correlated
26 MIRc 47 * 99.0 Weakly correlated
27 L1MB8 46 **** 99.0 Weakly correlated
28 L2 45 n.s 99.0 Weakly correlated
29 AluSc8 42 **** 74.0 Weakly correlated
30 L1MB3 37 **** 99.0 Weakly correlated
31 L1MB2 35 **** 99.0 Weakly correlated
32 L1PA17 34 **** 74.0 Weakly correlated
33 AluSq 33 **** 74.0 Weakly correlated
34 L3 29 n.s 99.0 Weakly correlated
35 HERVH-int 26 ** 28.9 Highly correlated
36 L1ME1 26 n.s 99.0 Weakly correlated
37 L1M2 24 ** 99.0 Weakly correlated
38 L1M1 22 n.s 74.0 Weakly correlated
39 L1MB4 21 *** 99.0 Weakly correlated
40 L1M5 20 n.s 99.0 Weakly correlated
41 L1MB5 19 ** 99.0 Weakly correlated
42 AluSg4 18 **** 74.0 Weakly correlated
43 MSTA 18 n.s 43.0 Moderately correlated
44 AluSg7 17 *** 74.0 Weakly correlated
45 AluSx4 17 ** 74.0 Weakly correlated
46 L1MA4A 17 n.s 87.0 Weakly correlated
47 MLT1J 17 * 99.0 Weakly correlated
48 L1PB4 16 n.s 99.0 Weakly correlated
49 HAL1 15 n.s 99.0 Weakly correlated
50 L1M4 14 n.s 99.0 Weakly correlated
51 L1MC3 14 n.s 99.0 Weakly correlated
52 AluJr4 13 n.s 74.0 Weakly correlated
53 HERVL-int 12 n.s 74.0 Weakly correlated
54 L1ME3A 12 n.s 99.0 Weakly correlated
55 LTR33 12 * 99.0 Weakly correlated
56 MLT1A0 12 n.s 99.0 Weakly correlated
57 FLAM_C 11 n.s 74.0 Weakly correlated
58 L1MC4a 11 n.s 99.0 Weakly correlated
59 MLT1K 11 n.s 99.0 Weakly correlated
60 FLAM_A 10 ** 74.0 Weakly correlated
61 L1MA3 10 n.s 74.0 Weakly correlated
62 L1MA4 10 n.s 87.0 Weakly correlated
63 L1MEc 10 n.s 99.0 Weakly correlated
64 L1MA7 9 n.s 87.0 Weakly correlated
65 L1ME2 9 n.s 99.0 Weakly correlated
66 L1ME4a 9 n.s 99.0 Weakly correlated
67 L1PA8 9 n.s 74.0 Weakly correlated
68 LTR18A 9 **** 43.0 Moderately correlated
69 MER57A-int 9 *** 43.0 Moderately correlated
70 ERV3-16A3_I-int 8 n.s 99.0 Weakly correlated
71 L1MA2 8 n.s 74.0 Weakly correlated
72 L1MB1 8 n.s 99.0 Weakly correlated
73 L1MC1 8 n.s 99.0 Weakly correlated
74 L1MEd 8 n.s 99.0 Weakly correlated
75 L1P3 8 n.s 74.0 Weakly correlated
76 L1PA14 8 n.s 74.0 Weakly correlated
77 L1PA2 8 n.s 15.2 Weakly correlated
78 L1PA5 8 n.s 19.6 Weakly correlated
79 L1PA6 8 n.s 28.9 Highly correlated
80 L1PREC2 8 n.s 43.0 Moderately correlated
81 MER52-int 8 **** 99.0 Weakly correlated
82 MLT1D 8 n.s 99.0 Weakly correlated
83 MLT1G 8 *** 99.0 Weakly correlated
84 AluYj4 7 *** 0.0 Weakly correlated
85 ERVL-E-int 7 n.s 99.0 Weakly correlated
86 HERVL18-int 7 **** 43.0 Moderately correlated
87 L1MA8 7 n.s 87.0 Weakly correlated
88 L1MCa 7 n.s 99.0 Weakly correlated
89 L1MEf 7 n.s 99.0 Weakly correlated
90 L1PA7 7 n.s 74.0 Weakly correlated
91 LTR76 7 **** 74.0 Weakly correlated
92 MIR1_Amn 7 * 319.0 Weakly correlated
93 MLT1N2 7 ** 99.0 Weakly correlated
94 AluSc5 6 n.s 74.0 Weakly correlated
95 ERVL-B4-int 6 n.s 99.0 Weakly correlated
96 FRAM 6 * 74.0 Weakly correlated
97 L1MC5 6 n.s 99.0 Weakly correlated
98 L1MC5a 6 n.s 99.0 Weakly correlated
99 L1MD1 6 n.s 99.0 Weakly correlated
100 L1MD2 6 n.s 99.0 Weakly correlated
101 L1ME3 6 n.s 99.0 Weakly correlated
102 L1ME4b 6 n.s 99.0 Weakly correlated
103 L1MEg 6 n.s 99.0 Weakly correlated
104 L4_A_Mam 6 n.s 99.0 Weakly correlated
105 LTR12C 6 n.s 19.6 Weakly correlated
106 LTR14B 6 **** 28.9 Highly correlated
107 LTR49-int 6 * 74.0 Weakly correlated
108 MLT1E2 6 n.s 99.0 Weakly correlated
109 MLT1H 6 n.s 99.0 Weakly correlated
110 MamRTE1 6 n.s 99.0 Weakly correlated
111 THE1D 6 n.s 43.0 Moderately correlated
112 L1MC4 5 n.s 99.0 Weakly correlated
113 L1ME3B 5 n.s 99.0 Weakly correlated
114 L1ME3Cz 5 n.s 99.0 Weakly correlated
115 L1PA10 5 n.s 74.0 Weakly correlated
116 L1PA3 5 n.s 19.6 Weakly correlated
117 L1PA4 5 n.s 19.6 Weakly correlated
118 L1PB2 5 n.s 74.0 Weakly correlated
119 L3b 5 n.s 99.0 Weakly correlated
120 LTR16A1 5 * 99.0 Weakly correlated
121 LTR16C 5 n.s 99.0 Weakly correlated
122 LTR16E2 5 ** 99.0 Weakly correlated
123 LTR8 5 n.s 43.0 Moderately correlated
124 MER39 5 n.s 74.0 Weakly correlated
125 MER50 5 n.s 43.0 Moderately correlated
126 MER52A 5 n.s 74.0 Weakly correlated
127 MLT1H2 5 n.s 99.0 Weakly correlated
128 MLT1J1 5 n.s 99.0 Weakly correlated
129 MLT1J2 5 n.s 99.0 Weakly correlated
130 MSTD 5 n.s 74.0 Weakly correlated
131 Alu 4 *** 74.0 Weakly correlated
132 AluSq10 4 * 74.0 Weakly correlated
133 AluYc 4 n.s 74.0 Weakly correlated
134 AluYm1 4 n.s 19.6 Weakly correlated
135 HERVL32-int 4 **** 43.0 Moderately correlated
136 HUERS-P2-int 4 *** 43.0 Moderately correlated
137 L1MA6 4 n.s 87.0 Weakly correlated
138 L1MA9 4 n.s 99.0 Weakly correlated
139 L1MD 4 n.s 99.0 Weakly correlated
140 L1ME3D 4 n.s 99.0 Weakly correlated
141 L1P4 4 n.s 74.0 Weakly correlated
142 LTR10A 4 **** 28.9 Highly correlated
143 LTR13 4 ** 19.6 Weakly correlated
144 LTR1D 4 *** 43.0 Moderately correlated
145 LTR25 4 **** 43.0 Moderately correlated
146 LTR33A 4 * 99.0 Weakly correlated
147 LTR50 4 * 99.0 Weakly correlated
148 MER21C 4 n.s 99.0 Weakly correlated
149 MER41E 4 **** 74.0 Weakly correlated
150 MLT1C 4 n.s 94.0 Weakly correlated
151 MLT1F 4 n.s 99.0 Weakly correlated
152 MLT1H1 4 n.s 99.0 Weakly correlated
153 MLT1O 4 n.s 99.0 Weakly correlated
154 MLT2A2 4 n.s 74.0 Weakly correlated
155 MamSINE1 4 * 99.0 Weakly correlated
156 L1M3 3 n.s 99.0 Weakly correlated
157 L1M4a2 3 n.s 99.0 Weakly correlated
158 L1M7 3 n.s 99.0 Weakly correlated
159 L1MA1 3 n.s 74.0 Weakly correlated
160 L1MA10 3 n.s 99.0 Weakly correlated
161 L1MC2 3 n.s 99.0 Weakly correlated
162 L1MD3 3 n.s 99.0 Weakly correlated
163 L1ME3E 3 n.s 99.0 Weakly correlated
164 L1ME3G 3 n.s 99.0 Weakly correlated
165 L1ME4c 3 n.s 99.0 Weakly correlated
166 L1PA11 3 n.s 74.0 Weakly correlated
167 L4_C_Mam 3 n.s 99.0 Weakly correlated
168 LTR16B2 3 * 99.0 Weakly correlated
169 LTR17 3 * 28.9 Highly correlated
170 LTR19A 3 ** 43.0 Moderately correlated
171 LTR46 3 **** 43.0 Moderately correlated
172 LTR81C 3 *** 99.0 Weakly correlated
173 MER31-int 3 n.s 99.0 Weakly correlated
174 MER41-int 3 n.s 74.0 Weakly correlated
175 MER50B 3 * 43.0 Moderately correlated
176 MER57-int 3 n.s 87.0 Weakly correlated
177 MER65-int 3 n.s 87.0 Weakly correlated
178 MER89 3 * 99.0 Weakly correlated
179 MLT1B 3 n.s 99.0 Weakly correlated
180 MLT1E1A 3 n.s 99.0 Weakly correlated
181 MLT1F2 3 n.s 99.0 Weakly correlated
182 MLT1G1 3 n.s 99.0 Weakly correlated
183 MLT1I-int 3 ** 99.0 Weakly correlated
184 MSTB 3 n.s 43.0 Moderately correlated
185 MSTD-int 3 n.s 74.0 Weakly correlated
186 THE1B 3 n.s 43.0 Moderately correlated
187 AluSq4 2 n.s 74.0 Weakly correlated
188 AluYh3 2 n.s 15.2 Weakly correlated
189 ERV24_Prim-int 2 * 74.0 Weakly correlated
190 FAM 2 n.s 87.0 Weakly correlated
191 HAL1ME 2 n.s 99.0 Weakly correlated
192 HERV4_I-int 2 * 43.0 Moderately correlated
193 L1M3c 2 n.s 99.0 Weakly correlated
194 L1M4b 2 n.s 99.0 Weakly correlated
195 L1MA5A 2 n.s 87.0 Weakly correlated
196 L1ME2z 2 n.s 99.0 Weakly correlated
197 L1MEb 2 n.s 99.0 Weakly correlated
198 L1MEg1 2 * 99.0 Weakly correlated
199 L1MEi 2 n.s 99.0 Weakly correlated
200 L1P4a 2 n.s 74.0 Weakly correlated
201 L1PA12 2 n.s 74.0 Weakly correlated
202 L1PA8A 2 n.s 74.0 Weakly correlated
203 L2-1_AMi 2 * 319.0 Weakly correlated
204 L4_B_Mam 2 n.s 99.0 Weakly correlated
205 LFSINE_Vert 2 * 319.0 Weakly correlated
206 LTR104_Mam 2 n.s 99.0 Weakly correlated
207 LTR12_ 2 * 28.9 Highly correlated
208 LTR16A 2 n.s 99.0 Weakly correlated
209 LTR16D 2 * 99.0 Weakly correlated
210 LTR18B 2 ** 43.0 Moderately correlated
211 LTR26 2 * 74.0 Weakly correlated
212 LTR29 2 * 43.0 Moderately correlated
213 LTR40a 2 n.s 99.0 Weakly correlated
214 LTR45B 2 ** 74.0 Weakly correlated
215 LTR62 2 ** 74.0 Weakly correlated
216 LTR64 2 ** 74.0 Weakly correlated
217 LTR67B 2 n.s 99.0 Weakly correlated
218 LTR7 2 n.s 19.6 Weakly correlated
219 LTR88a 2 ** 99.0 Weakly correlated
220 LTR88b 2 * 99.0 Weakly correlated
221 LTR88c 2 ** 99.0 Weakly correlated
222 LTR9A1 2 * 43.0 Moderately correlated
223 MER34-int 2 * 99.0 Weakly correlated
224 MER34A1 2 * 99.0 Weakly correlated
225 MER4CL34 2 n.s 43.0 Moderately correlated
226 MER4E1 2 n.s 74.0 Weakly correlated
227 MER51-int 2 n.s 43.0 Moderately correlated
228 MER61F 2 *** 43.0 Moderately correlated
229 MER65C 2 * 74.0 Weakly correlated
230 MER65D 2 ** 87.0 Weakly correlated
231 MER66-int 2 n.s 43.0 Moderately correlated
232 MER66B 2 n.s 43.0 Moderately correlated
233 MER68 2 n.s 99.0 Weakly correlated
234 MER74A 2 n.s 99.0 Weakly correlated
235 MER83 2 ** 43.0 Moderately correlated
236 MER92-int 2 n.s 99.0 Weakly correlated
237 MLT1G3 2 n.s 99.0 Weakly correlated
238 MLT1I 2 n.s 99.0 Weakly correlated
239 MLT1J-int 2 n.s 99.0 Weakly correlated
240 MLT1J1-int 2 * 99.0 Weakly correlated
241 MLT1L 2 n.s 99.0 Weakly correlated
242 MLT1M 2 n.s 99.0 Weakly correlated
243 MLT2B3 2 n.s 99.0 Weakly correlated
244 MSTA-int 2 n.s 43.0 Moderately correlated
245 MSTB-int 2 n.s 43.0 Moderately correlated
246 MSTB2 2 n.s 74.0 Weakly correlated
247 MamGyp-int 2 * 99.0 Weakly correlated
248 MamGypLTR1a 2 * 99.0 Weakly correlated
249 MamGypLTR2c 2 * 99.0 Weakly correlated
250 MamGypLTR3a 2 * 99.0 Weakly correlated
251 MamGypsy2-I 2 n.s 99.0 Weakly correlated
252 MamRep605 2 n.s 99.0 Weakly correlated
253 Plat_L3 2 n.s 99.0 Weakly correlated
254 THE1-int 2 ** 43.0 Moderately correlated
255 THE1B-int 2 n.s 43.0 Moderately correlated
256 THE1C 2 n.s 43.0 Moderately correlated
257 THE1C-int 2 n.s 43.0 Moderately correlated
258 THE1D-int 2 n.s 28.9 Highly correlated
259 AluYa5 1 n.s 15.2 Weakly correlated
260 AluYh9 1 *** 15.2 Weakly correlated
261 AluYk11 1 * 15.2 Weakly correlated
262 AluYk12 1 ** 15.2 Weakly correlated
263 AluYk3 1 n.s 19.6 Weakly correlated
264 CR1-16_AMi 1 * 319.0 Weakly correlated
265 CR1-3_Croc 1 n.s 319.0 Weakly correlated
266 CR1_Mam 1 n.s 99.0 Weakly correlated
267 ERV3-16A3_LTR 1 n.s 99.0 Weakly correlated
268 HAL1M8 1 n.s 99.0 Weakly correlated
269 HAL1b 1 n.s 99.0 Weakly correlated
270 HERV16-int 1 n.s 99.0 Weakly correlated
271 HERV17-int 1 n.s 28.9 Highly correlated
272 HERV1_LTRb 1 **** 28.9 Highly correlated
273 HERVFH19-int 1 * 43.0 Moderately correlated
274 HERVK14-int 1 n.s 28.9 Highly correlated
275 HERVKC4-int 1 * 28.9 Highly correlated
276 HERVL74-int 1 n.s 99.0 Weakly correlated
277 HUERS-P3-int 1 n.s 43.0 Moderately correlated
278 L1M2a1 1 * 79.0 Weakly correlated
279 L1MC 1 n.s 99.0 Weakly correlated
280 L1MDa 1 n.s 99.0 Weakly correlated
281 L1ME3C 1 n.s 99.0 Weakly correlated
282 L1ME3F 1 n.s 99.0 Weakly correlated
283 L1ME5 1 n.s 99.0 Weakly correlated
284 L1MEa 1 n.s 99.0 Weakly correlated
285 L1MEg2 1 n.s 99.0 Weakly correlated
286 L1P1 1 n.s 19.6 Weakly correlated
287 L1P2 1 n.s 28.9 Highly correlated
288 L1P4d 1 n.s 74.0 Weakly correlated
289 L1P4e 1 n.s 74.0 Weakly correlated
290 L1PB3 1 n.s 74.0 Weakly correlated
291 L5 1 n.s 99.0 Weakly correlated
292 LTR1 1 n.s 43.0 Moderately correlated
293 LTR12D 1 n.s 19.6 Weakly correlated
294 LTR12F 1 n.s 28.9 Highly correlated
295 LTR13A 1 n.s 28.9 Highly correlated
296 LTR16E1 1 n.s 99.0 Weakly correlated
297 LTR19-int 1 n.s 43.0 Moderately correlated
298 LTR19C 1 * 43.0 Moderately correlated
299 LTR1A2 1 n.s 43.0 Moderately correlated
300 LTR24 1 * 74.0 Weakly correlated
301 LTR27D 1 * 43.0 Moderately correlated
302 LTR28C 1 n.s 43.0 Moderately correlated
303 LTR31 1 * 74.0 Weakly correlated
304 LTR33A_ 1 n.s 99.0 Weakly correlated
305 LTR33B 1 n.s 99.0 Weakly correlated
306 LTR37-int 1 n.s 99.0 Weakly correlated
307 LTR39 1 n.s 43.0 Moderately correlated
308 LTR40b 1 n.s 99.0 Weakly correlated
309 LTR41B 1 n.s 99.0 Weakly correlated
310 LTR45 1 ** 99.0 Weakly correlated
311 LTR48 1 n.s 74.0 Weakly correlated
312 LTR52 1 n.s 99.0 Weakly correlated
313 LTR54 1 n.s 74.0 Weakly correlated
314 LTR54B 1 n.s 74.0 Weakly correlated
315 LTR55 1 n.s 99.0 Weakly correlated
316 LTR57-int 1 n.s 74.0 Weakly correlated
317 LTR61 1 * 43.0 Moderately correlated
318 LTR65 1 * 99.0 Weakly correlated
319 LTR66 1 * 43.0 Moderately correlated
320 LTR6B 1 * 19.6 Weakly correlated
321 LTR70 1 * 74.0 Weakly correlated
322 LTR75B 1 * 99.0 Weakly correlated
323 LTR78 1 n.s 99.0 Weakly correlated
324 LTR78B 1 n.s 99.0 Weakly correlated
325 LTR79 1 n.s 99.0 Weakly correlated
326 LTR7C 1 * 28.9 Highly correlated
327 LTR80A 1 * 99.0 Weakly correlated
328 LTR81AB 1 ** 99.0 Weakly correlated
329 LTR82A 1 n.s 99.0 Weakly correlated
330 LTR86A2 1 * 99.0 Weakly correlated
331 LTR8A 1 n.s 43.0 Moderately correlated
332 LTR8B 1 n.s 43.0 Moderately correlated
333 LTR9 1 n.s 43.0 Moderately correlated
334 LTR90B 1 * 99.0 Weakly correlated
335 LTR9B 1 n.s 43.0 Moderately correlated
336 LTR9D 1 n.s 43.0 Moderately correlated
337 MER101-int 1 n.s 74.0 Weakly correlated
338 MER110-int 1 n.s 99.0 Weakly correlated
339 MER11A 1 n.s 28.9 Highly correlated
340 MER11C 1 n.s 19.6 Weakly correlated
341 MER34A 1 n.s 99.0 Weakly correlated
342 MER34B 1 n.s 87.0 Weakly correlated
343 MER39B 1 n.s 74.0 Weakly correlated
344 MER4-int 1 n.s 74.0 Weakly correlated
345 MER41A 1 n.s 74.0 Weakly correlated
346 MER41D 1 n.s 74.0 Weakly correlated
347 MER4A1 1 n.s 74.0 Weakly correlated
348 MER4A1_ 1 n.s 74.0 Weakly correlated
349 MER4C 1 n.s 74.0 Weakly correlated
350 MER4D1 1 n.s 74.0 Weakly correlated
351 MER50-int 1 n.s 43.0 Moderately correlated
352 MER51A 1 n.s 43.0 Moderately correlated
353 MER52D 1 n.s 74.0 Weakly correlated
354 MER57B2 1 n.s 43.0 Moderately correlated
355 MER57C2 1 n.s 87.0 Weakly correlated
356 MER61A 1 n.s 43.0 Moderately correlated
357 MER61E 1 * 43.0 Moderately correlated
358 MER65A 1 n.s 74.0 Weakly correlated
359 MER66A 1 * 43.0 Moderately correlated
360 MER67C 1 n.s 99.0 Weakly correlated
361 MER70B 1 n.s 87.0 Weakly correlated
362 MER70C 1 * 99.0 Weakly correlated
363 MER73 1 * 87.0 Weakly correlated
364 MER74B 1 n.s 99.0 Weakly correlated
365 MER76 1 n.s 99.0 Weakly correlated
366 MER77B 1 n.s 99.0 Weakly correlated
367 MER90 1 n.s 99.0 Weakly correlated
368 MER90a 1 n.s 99.0 Weakly correlated
369 MLT-int 1 n.s 99.0 Weakly correlated
370 MLT1A 1 n.s 99.0 Weakly correlated
371 MLT1A-int 1 n.s 99.0 Weakly correlated
372 MLT1A1 1 n.s 87.0 Weakly correlated
373 MLT1E1 1 n.s 99.0 Weakly correlated
374 MLT1E3 1 n.s 99.0 Weakly correlated
375 MLT1F1 1 n.s 99.0 Weakly correlated
376 MLT1F2-int 1 n.s 99.0 Weakly correlated
377 MLT1H-int 1 n.s 99.0 Weakly correlated
378 MLT1L-int 1 ** 99.0 Weakly correlated
379 MLT2A1 1 n.s 74.0 Weakly correlated
380 MLT2B4 1 n.s 99.0 Weakly correlated
381 MLT2D 1 n.s 99.0 Weakly correlated
382 MLT2F 1 n.s 99.0 Weakly correlated
383 MamGypLTR1b 1 n.s 99.0 Weakly correlated
384 MamGypLTR1c 1 n.s 99.0 Weakly correlated
385 MamGypLTR1d 1 n.s 99.0 Weakly correlated
386 MamGypLTR3 1 n.s 99.0 Weakly correlated
387 MamGypsy2-LTR 1 * 99.0 Weakly correlated
388 MamRep1527 1 n.s 99.0 Weakly correlated
389 Mam_R4 1 * 99.0 Weakly correlated
390 PRIMA41-int 1 n.s 74.0 Weakly correlated
391 PrimLTR79 1 ** 74.0 Weakly correlated
392 SVA_B 1 n.s 15.2 Weakly correlated
393 SVA_C 1 n.s 15.2 Weakly correlated
394 THE1A-int 1 n.s 43.0 Moderately correlated
395 X6A_LINE 1 * 99.0 Weakly correlated
396 X6B_LINE 1 * 99.0 Weakly correlated
397 X7A_LINE 1 * 319.0 Weakly correlated
398 X7C_LINE 1 * 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 AluSx 209 **** 74.0 Weakly correlated
2 AluSx1 199 **** 74.0 Weakly correlated
3 AluSz 196 **** 74.0 Weakly correlated
4 L1PA16 185 **** 74.0 Weakly correlated
5 AluJb 120 *** 74.0 Weakly correlated
6 AluSz6 93 **** 74.0 Weakly correlated
7 AluSg 61 **** 74.0 Weakly correlated
8 AluSq2 59 n.s 74.0 Weakly correlated
9 AluSc 57 **** 74.0 Weakly correlated
10 L1PA15 48 **** 74.0 Weakly correlated
11 AluSx3 38 ** 74.0 Weakly correlated
12 L1PB1 36 n.s 74.0 Weakly correlated
13 AluSc8 36 **** 74.0 Weakly correlated
14 AluJr 32 n.s 74.0 Weakly correlated
15 AluSq 31 **** 74.0 Weakly correlated
16 AluSp 31 n.s 74.0 Weakly correlated
17 AluY 30 n.s 74.0 Weakly correlated
18 L2a 29 n.s 99.0 Weakly correlated
19 AluJo 23 n.s 74.0 Weakly correlated
20 MIRb 22 n.s 99.0 Weakly correlated
21 L1PA17 21 **** 74.0 Weakly correlated
22 MIR 19 n.s 99.0 Weakly correlated
23 L2c 19 n.s 99.0 Weakly correlated
24 L1PBa1 18 **** 74.0 Weakly correlated
25 AluSx4 16 ** 74.0 Weakly correlated
26 L1M2 15 n.s 99.0 Weakly correlated
27 L1MB7 15 n.s 99.0 Weakly correlated
28 L2b 15 n.s 99.0 Weakly correlated
29 L1M1 15 n.s 74.0 Weakly correlated
30 L2 14 n.s 99.0 Weakly correlated
31 L1MA4A 13 n.s 87.0 Weakly correlated
32 AluSg7 13 ** 74.0 Weakly correlated
33 AluSg4 12 ** 74.0 Weakly correlated
34 MIR3 11 n.s 99.0 Weakly correlated
35 MIRc 10 n.s 99.0 Weakly correlated
36 L1MB8 8 n.s 99.0 Weakly correlated
37 L3 8 n.s 99.0 Weakly correlated
38 L1ME1 7 n.s 99.0 Weakly correlated
39 HERVL18-int 6 **** 43.0 Moderately correlated
40 L1MC3 6 n.s 99.0 Weakly correlated
41 MER57A-int 6 * 43.0 Moderately correlated
42 L1MB2 6 n.s 99.0 Weakly correlated
43 LTR76 6 **** 74.0 Weakly correlated
44 HAL1 5 n.s 99.0 Weakly correlated
45 L1MA3 5 n.s 74.0 Weakly correlated
46 MLT1J 5 n.s 99.0 Weakly correlated
47 L1MB5 5 n.s 99.0 Weakly correlated
48 L1MEd 5 n.s 99.0 Weakly correlated
49 L1MA2 5 n.s 74.0 Weakly correlated
50 LTR12C 5 n.s 19.6 Weakly correlated
51 L1MC4a 5 n.s 99.0 Weakly correlated
52 LTR18A 5 **** 43.0 Moderately correlated
53 L1PBa 4 n.s 74.0 Weakly correlated
54 AluJr4 4 n.s 74.0 Weakly correlated
55 HERVL32-int 4 **** 43.0 Moderately correlated
56 ERVL-B4-int 4 n.s 99.0 Weakly correlated
57 L1MCa 4 n.s 99.0 Weakly correlated
58 MSTA 4 n.s 43.0 Moderately correlated
59 ERV3-16A3_I-int 4 n.s 99.0 Weakly correlated
60 L1MB1 4 n.s 99.0 Weakly correlated
61 MLT1D 4 n.s 99.0 Weakly correlated
62 MLT1J1 4 n.s 99.0 Weakly correlated
63 L1MEf 3 n.s 99.0 Weakly correlated
64 MER52-int 3 n.s 99.0 Weakly correlated
65 AluSc5 3 n.s 74.0 Weakly correlated
66 LTR25 3 *** 43.0 Moderately correlated
67 MLT1N2 3 n.s 99.0 Weakly correlated
68 AluSq10 3 * 74.0 Weakly correlated
69 L1MB4 3 n.s 99.0 Weakly correlated
70 LTR8 3 n.s 43.0 Moderately correlated
71 HERVL-int 3 n.s 74.0 Weakly correlated
72 L1PB4 3 n.s 99.0 Weakly correlated
73 LTR33 3 n.s 99.0 Weakly correlated
74 LTR46 3 **** 43.0 Moderately correlated
75 MER52A 3 n.s 74.0 Weakly correlated
76 L1ME3 3 n.s 99.0 Weakly correlated
77 L1PA7 3 n.s 74.0 Weakly correlated
78 MLT1H 3 n.s 99.0 Weakly correlated
79 AluYc 3 n.s 74.0 Weakly correlated
80 AluYm1 3 n.s 19.6 Weakly correlated
81 MER41E 3 *** 74.0 Weakly correlated
82 MLT1K 3 n.s 99.0 Weakly correlated
83 MLT1A0 3 n.s 99.0 Weakly correlated
84 FLAM_C 2 n.s 74.0 Weakly correlated
85 MLT1G 2 n.s 99.0 Weakly correlated
86 MamGypLTR1a 2 * 99.0 Weakly correlated
87 AluSq4 2 n.s 74.0 Weakly correlated
88 L1M5 2 n.s 99.0 Weakly correlated
89 L1MA1 2 n.s 74.0 Weakly correlated
90 L1MD3 2 n.s 99.0 Weakly correlated
91 L1PA6 2 n.s 28.9 Highly correlated
92 L1PB2 2 n.s 74.0 Weakly correlated
93 AluYj4 2 n.s 0.0 Weakly correlated
94 HERVKC4-int 2 ** 28.9 Highly correlated
95 L1MA4 2 n.s 87.0 Weakly correlated
96 L1ME4b 2 n.s 99.0 Weakly correlated
97 L1PREC2 2 n.s 43.0 Moderately correlated
98 LTR40a 2 n.s 99.0 Weakly correlated
99 MLT1I-int 2 * 99.0 Weakly correlated
100 L1MC2 2 n.s 99.0 Weakly correlated
101 L1ME4a 2 n.s 99.0 Weakly correlated
102 L1PA8 2 n.s 74.0 Weakly correlated
103 LTR49-int 2 n.s 74.0 Weakly correlated
104 MER61F 2 *** 43.0 Moderately correlated
105 MER89 2 n.s 99.0 Weakly correlated
106 MLT1E1A 2 n.s 99.0 Weakly correlated
107 MLT1G1 2 n.s 99.0 Weakly correlated
108 MLT1O 2 n.s 99.0 Weakly correlated
109 L1MEg 2 n.s 99.0 Weakly correlated
110 LTR16B2 2 n.s 99.0 Weakly correlated
111 MER50B 2 n.s 43.0 Moderately correlated
112 MLT2A2 2 n.s 74.0 Weakly correlated
113 L1MC4 2 n.s 99.0 Weakly correlated
114 L1MD1 2 n.s 99.0 Weakly correlated
115 L1ME3A 2 n.s 99.0 Weakly correlated
116 HERV4_I-int 2 * 43.0 Moderately correlated
117 L1M4 2 n.s 99.0 Weakly correlated
118 MER50 2 n.s 43.0 Moderately correlated
119 L1MC5 2 n.s 99.0 Weakly correlated
120 LTR16E2 2 n.s 99.0 Weakly correlated
121 ERV24_Prim-int 1 n.s 74.0 Weakly correlated
122 L1MA9 1 n.s 99.0 Weakly correlated
123 L1MD 1 n.s 99.0 Weakly correlated
124 L1ME3B 1 n.s 99.0 Weakly correlated
125 L1ME3G 1 n.s 99.0 Weakly correlated
126 L1MEg2 1 n.s 99.0 Weakly correlated
127 L1MEi 1 n.s 99.0 Weakly correlated
128 L1PA12 1 n.s 74.0 Weakly correlated
129 L1PA14 1 n.s 74.0 Weakly correlated
130 LTR82A 1 n.s 99.0 Weakly correlated
131 MER4A1_ 1 n.s 74.0 Weakly correlated
132 MER70B 1 n.s 87.0 Weakly correlated
133 MLT-int 1 n.s 99.0 Weakly correlated
134 MLT1B 1 n.s 99.0 Weakly correlated
135 MLT1G3 1 n.s 99.0 Weakly correlated
136 MLT1H2 1 n.s 99.0 Weakly correlated
137 MLT1M 1 n.s 99.0 Weakly correlated
138 PRIMA41-int 1 n.s 74.0 Weakly correlated
139 X7A_LINE 1 * 319.0 Weakly correlated
140 AluYh3 1 n.s 15.2 Weakly correlated
141 CR1-16_AMi 1 * 319.0 Weakly correlated
142 HAL1ME 1 n.s 99.0 Weakly correlated
143 L1HS 1 n.s 8.6 Weakly correlated
144 LTR19-int 1 n.s 43.0 Moderately correlated
145 LTR33A 1 n.s 99.0 Weakly correlated
146 LTR88a 1 n.s 99.0 Weakly correlated
147 MER110-int 1 n.s 99.0 Weakly correlated
148 MER66B 1 n.s 43.0 Moderately correlated
149 MER74A 1 n.s 99.0 Weakly correlated
150 MLT1E3 1 n.s 99.0 Weakly correlated
151 MLT1L-int 1 ** 99.0 Weakly correlated
152 MSTB2 1 n.s 74.0 Weakly correlated
153 HAL1M8 1 n.s 99.0 Weakly correlated
154 HERVK14-int 1 n.s 28.9 Highly correlated
155 HERVL74-int 1 n.s 99.0 Weakly correlated
156 L1MDa 1 n.s 99.0 Weakly correlated
157 L1ME4c 1 n.s 99.0 Weakly correlated
158 L1MEc 1 n.s 99.0 Weakly correlated
159 LTR1D 1 n.s 43.0 Moderately correlated
160 LTR57-int 1 n.s 74.0 Weakly correlated
161 LTR90B 1 * 99.0 Weakly correlated
162 MER70C 1 * 99.0 Weakly correlated
163 MamGyp-int 1 n.s 99.0 Weakly correlated
164 Alu 1 n.s 74.0 Weakly correlated
165 FRAM 1 n.s 74.0 Weakly correlated
166 LTR79 1 n.s 99.0 Weakly correlated
167 LTR88c 1 n.s 99.0 Weakly correlated
168 MER21C 1 n.s 99.0 Weakly correlated
169 MER39 1 n.s 74.0 Weakly correlated
170 MER68 1 n.s 99.0 Weakly correlated
171 MamGypLTR1d 1 n.s 99.0 Weakly correlated
172 THE1B-int 1 n.s 43.0 Moderately correlated
173 L1M2a1 1 * 79.0 Weakly correlated
174 L1MA10 1 n.s 99.0 Weakly correlated
175 L1PA2 1 n.s 15.2 Weakly correlated
176 LFSINE_Vert 1 n.s 319.0 Weakly correlated
177 LTR1 1 n.s 43.0 Moderately correlated
178 LTR16A1 1 n.s 99.0 Weakly correlated
179 LTR16D 1 n.s 99.0 Weakly correlated
180 MER41-int 1 n.s 74.0 Weakly correlated
181 MER77B 1 n.s 99.0 Weakly correlated
182 MLT1E2 1 n.s 99.0 Weakly correlated
183 MSTB-int 1 n.s 43.0 Moderately correlated
184 HUERS-P2-int 1 n.s 43.0 Moderately correlated
185 L1M4a2 1 n.s 99.0 Weakly correlated
186 L1MC5a 1 n.s 99.0 Weakly correlated
187 L1MD2 1 n.s 99.0 Weakly correlated
188 L1P3 1 n.s 74.0 Weakly correlated
189 LTR12F 1 n.s 28.9 Highly correlated
190 LTR12_ 1 n.s 28.9 Highly correlated
191 LTR33A_ 1 n.s 99.0 Weakly correlated
192 LTR48 1 n.s 74.0 Weakly correlated
193 LTR78 1 n.s 99.0 Weakly correlated
194 MER61E 1 * 43.0 Moderately correlated
195 MER65A 1 n.s 74.0 Weakly correlated
196 MIR1_Amn 1 n.s 319.0 Weakly correlated
197 MLT1J2 1 n.s 99.0 Weakly correlated
198 MSTD 1 n.s 74.0 Weakly correlated
199 L1MB3 1 n.s 99.0 Weakly correlated
200 L1PA5 1 n.s 19.6 Weakly correlated
201 LTR19C 1 * 43.0 Moderately correlated
202 LTR52 1 n.s 99.0 Weakly correlated
203 LTR75B 1 * 99.0 Weakly correlated
204 LTR8A 1 n.s 43.0 Moderately correlated
205 MER4A1 1 n.s 74.0 Weakly correlated
206 MER65C 1 n.s 74.0 Weakly correlated
207 MER74B 1 n.s 99.0 Weakly correlated
208 MLT1F 1 n.s 99.0 Weakly correlated
209 MLT1I 1 n.s 99.0 Weakly correlated
210 MLT1J1-int 1 n.s 99.0 Weakly correlated
211 MLT2B3 1 n.s 99.0 Weakly correlated
212 MamRep605 1 n.s 99.0 Weakly correlated
213 L1ME2 1 n.s 99.0 Weakly correlated
214 L4_A_Mam 1 n.s 99.0 Weakly correlated
215 LTR104_Mam 1 n.s 99.0 Weakly correlated
216 LTR7 1 n.s 19.6 Weakly correlated
217 MER34-int 1 n.s 99.0 Weakly correlated
218 MER83 1 n.s 43.0 Moderately correlated
219 MamGypsy2-LTR 1 * 99.0 Weakly correlated
220 Mam_R4 1 * 99.0 Weakly correlated
221 Plat_L3 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ALUJB 74.0 Weakly correlated
2 ALUJO 74.0 Weakly correlated
3 ALUSC 74.0 Weakly correlated
4 ALUSC8 74.0 Weakly correlated
5 ALUSG 74.0 Weakly correlated
6 ALUSG4 74.0 Weakly correlated
7 ALUSG7 74.0 Weakly correlated
8 ALUSQ 74.0 Weakly correlated
9 ALUSX 74.0 Weakly correlated
10 ALUSX1 74.0 Weakly correlated
11 ALUSX3 74.0 Weakly correlated
12 ALUSX4 74.0 Weakly correlated
13 ALUSZ 74.0 Weakly correlated
14 ALUSZ6 74.0 Weakly correlated
15 ALUY 74.0 Weakly correlated
16 HERVL18-INT 43.0 Moderately correlated
17 L1PA15 74.0 Weakly correlated
18 L1PA16 74.0 Weakly correlated
19 L1PA17 74.0 Weakly correlated
20 L2 99.0 Weakly correlated
21 MER57A-INT 43.0 Moderately correlated