ZRdb KZFP & Repeats
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Human_ZNF347

  • Protein
    Zinc finger protein 347
  • Length
    839
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    43.0 Mya
  • Time of Changing in binding specificity
    43.0 Mya
  • Uniprot_ID
    Q96SE7
  • NCBI_ID
    84671
Sequence:
MALTQGQVTFRDVAIEFSQEEWTCLDPAQRTLYRDVMLENYRNLASLGISCFDLSIISMLEQGKEPFTLESQVQIAGNPDGWEWIKAVITALSSEFVMKDLLHKGKSNTGEVFQTVMLERQESQDIEGCSFREVQKNTHGLEYQCRDAEGNYKGVLLTQEGNLTHGRDEHDKRDARNKLIKNQLGLSLQSHLPELQLFQYEGKIYECNQVEKSFNNNSSVSPPQQMPYNVKTHISKKYLKDFISSLLLTQGQKANNWGSPYKSNGCGMVFPQNSHLASHQRSHTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPYKCNECGKAFGVRSSLAIHLVIHTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPYKYNEYGKAFSEHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPYECGKPFSICSSLTTHQTIHTGGKPYKCNVWKVLKSEFKPCKPSQNS
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 8..79
2 dec2h2 261..283
3 C2h2 289..311
4 C2h2 317..339
5 C2h2 345..367
6 C2h2 373..395
7 C2h2 401..423
8 C2h2 429..451
9 C2h2 457..479
10 C2h2 485..507
11 C2h2 513..535
12 C2h2 541..563
13 C2h2 569..591
14 C2h2 597..619
15 dec2h2 625..647
16 C2h2 653..675
17 C2h2 681..703
18 C2h2 709..731
19 C2h2 737..759
20 C2h2 765..787
21 dec2h2 790..812
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 LTR1E 220 **** 43.0 Highly correlated
2 LTR1B 189 **** 43.0 Highly correlated
3 LTR1D1 185 **** 43.0 Highly correlated
4 LTR1A1 172 **** 43.0 Highly correlated
5 LTR1F1 140 **** 43.0 Highly correlated
6 LTR1D 135 **** 43.0 Highly correlated
7 LTR28B 132 **** 43.0 Highly correlated
8 LTR1F2 98 **** 43.0 Highly correlated
9 LTR1F 94 **** 43.0 Highly correlated
10 LTR1 72 **** 43.0 Highly correlated
11 L2a 56 n.s 99.0 Weakly correlated
12 LTR1B1 51 **** 43.0 Highly correlated
13 LTR28 50 **** 43.0 Highly correlated
14 LTR1C1 47 **** 43.0 Highly correlated
15 LTR1B0 46 **** 43.0 Highly correlated
16 SVA_D 43 **** 15.2 Weakly correlated
17 L2c 41 n.s 99.0 Weakly correlated
18 L2b 35 n.s 99.0 Weakly correlated
19 LTR1A2 35 **** 43.0 Highly correlated
20 AluJb 29 n.s 74.0 Weakly correlated
21 AluSx 28 n.s 74.0 Weakly correlated
22 LTR1C3 28 **** 43.0 Highly correlated
23 SVA_F 25 **** 0.0 Weakly correlated
24 L2 23 n.s 99.0 Weakly correlated
25 AluSz 22 n.s 74.0 Weakly correlated
26 MIRb 22 n.s 99.0 Weakly correlated
27 MIRc 18 n.s 99.0 Weakly correlated
28 AluYj4 17 **** 0.0 Weakly correlated
29 AluSq2 16 n.s 74.0 Weakly correlated
30 AluSx1 16 n.s 74.0 Weakly correlated
31 LTR1C 16 **** 43.0 Highly correlated
32 MIR3 16 n.s 99.0 Weakly correlated
33 AluJr 13 n.s 74.0 Weakly correlated
34 L1PA16 13 n.s 74.0 Weakly correlated
35 LTR8 13 **** 43.0 Highly correlated
36 AluSc8 12 n.s 74.0 Weakly correlated
37 MIR 12 n.s 99.0 Weakly correlated
38 AluY 11 n.s 74.0 Weakly correlated
39 L1P3 11 ** 74.0 Weakly correlated
40 AluJo 10 n.s 74.0 Weakly correlated
41 AluSg 10 n.s 74.0 Weakly correlated
42 AluSp 10 n.s 74.0 Weakly correlated
43 L1MB7 9 n.s 99.0 Weakly correlated
44 FRAM 8 *** 74.0 Weakly correlated
45 HAL1 8 n.s 99.0 Weakly correlated
46 L1MC4 8 n.s 99.0 Weakly correlated
47 L1ME2z 8 * 99.0 Weakly correlated
48 THE1B 8 n.s 43.0 Highly correlated
49 L1MA9 7 n.s 99.0 Weakly correlated
50 LTR12C 7 n.s 19.6 Weakly correlated
51 MLT1A 7 n.s 99.0 Weakly correlated
52 AluSx3 6 n.s 74.0 Weakly correlated
53 L1M5 6 n.s 99.0 Weakly correlated
54 LTR16C 6 * 99.0 Weakly correlated
55 MLT1K 6 n.s 99.0 Weakly correlated
56 AluSc 5 n.s 74.0 Weakly correlated
57 AluYa8 5 **** 15.2 Weakly correlated
58 AluYm1 5 n.s 19.6 Weakly correlated
59 HERVL-int 5 n.s 74.0 Weakly correlated
60 L1M7 5 * 99.0 Weakly correlated
61 L1MB3 5 n.s 99.0 Weakly correlated
62 L1ME3A 5 n.s 99.0 Weakly correlated
63 L1ME3Cz 5 n.s 99.0 Weakly correlated
64 L1PB1 5 n.s 74.0 Weakly correlated
65 MLT1D 5 n.s 99.0 Weakly correlated
66 MLT1J 5 n.s 99.0 Weakly correlated
67 MLT2A2 5 n.s 74.0 Weakly correlated
68 MSTD 5 n.s 74.0 Weakly correlated
69 SVA_B 5 *** 15.2 Weakly correlated
70 SVA_C 5 *** 15.2 Weakly correlated
71 SVA_E 5 **** 0.0 Weakly correlated
72 AluSg7 4 n.s 74.0 Weakly correlated
73 AluSq 4 n.s 74.0 Weakly correlated
74 HERV9-int 4 * 28.9 Weakly correlated
75 L1MD2 4 n.s 99.0 Weakly correlated
76 L1ME4b 4 n.s 99.0 Weakly correlated
77 L1PA7 4 n.s 74.0 Weakly correlated
78 L3 4 n.s 99.0 Weakly correlated
79 L4_B_Mam 4 * 99.0 Weakly correlated
80 LOR1a 4 *** 74.0 Weakly correlated
81 LTR10A 4 **** 28.9 Weakly correlated
82 LTR52 4 *** 99.0 Weakly correlated
83 LTR8B 4 * 43.0 Highly correlated
84 MLT1L 4 n.s 99.0 Weakly correlated
85 MSTA 4 n.s 43.0 Highly correlated
86 MSTB 4 n.s 43.0 Highly correlated
87 AluSx4 3 n.s 74.0 Weakly correlated
88 FLAM_C 3 n.s 74.0 Weakly correlated
89 L1M4 3 n.s 99.0 Weakly correlated
90 L1MA4 3 n.s 87.0 Weakly correlated
91 L1MB8 3 n.s 99.0 Weakly correlated
92 L1MC4a 3 n.s 99.0 Weakly correlated
93 L1MC5a 3 n.s 99.0 Weakly correlated
94 L1MD1 3 n.s 99.0 Weakly correlated
95 L1MEf 3 n.s 99.0 Weakly correlated
96 L1MEg 3 n.s 99.0 Weakly correlated
97 L1MEi 3 n.s 99.0 Weakly correlated
98 L1MEj 3 * 99.0 Weakly correlated
99 L1PA4 3 n.s 19.6 Weakly correlated
100 LTR10F 3 *** 28.9 Weakly correlated
101 LTR16A 3 n.s 99.0 Weakly correlated
102 LTR16A1 3 * 99.0 Weakly correlated
103 LTR27D 3 **** 43.0 Highly correlated
104 LTR33 3 n.s 99.0 Weakly correlated
105 MER21-int 3 * 99.0 Weakly correlated
106 MER21C 3 n.s 99.0 Weakly correlated
107 MLT1B 3 n.s 99.0 Weakly correlated
108 MLT1C 3 n.s 94.0 Weakly correlated
109 MLT1F 3 n.s 99.0 Weakly correlated
110 MamGypLTR1d 3 *** 99.0 Weakly correlated
111 SVA_A 3 ** 19.6 Weakly correlated
112 AluJr4 2 n.s 74.0 Weakly correlated
113 AluSg4 2 n.s 74.0 Weakly correlated
114 AluSz6 2 n.s 74.0 Weakly correlated
115 AluYa5 2 n.s 15.2 Weakly correlated
116 HAL1b 2 n.s 99.0 Weakly correlated
117 HERV9NC-int 2 n.s 19.6 Weakly correlated
118 L1M1 2 n.s 74.0 Weakly correlated
119 L1M3 2 n.s 99.0 Weakly correlated
120 L1M4b 2 n.s 99.0 Weakly correlated
121 L1MA2 2 n.s 74.0 Weakly correlated
122 L1MA7 2 n.s 87.0 Weakly correlated
123 L1MB2 2 n.s 99.0 Weakly correlated
124 L1ME3G 2 n.s 99.0 Weakly correlated
125 L1MEd 2 n.s 99.0 Weakly correlated
126 L1P1 2 n.s 19.6 Weakly correlated
127 LOR1b 2 * 74.0 Weakly correlated
128 LTR10B1 2 *** 28.9 Weakly correlated
129 LTR12 2 n.s 28.9 Weakly correlated
130 LTR55 2 ** 99.0 Weakly correlated
131 LTR62 2 ** 74.0 Weakly correlated
132 LTR79 2 n.s 99.0 Weakly correlated
133 MER21A 2 n.s 74.0 Weakly correlated
134 MER21B 2 n.s 99.0 Weakly correlated
135 MER4CL34 2 * 43.0 Highly correlated
136 MER50 2 n.s 43.0 Highly correlated
137 MER76 2 * 99.0 Weakly correlated
138 MER89 2 * 99.0 Weakly correlated
139 MLT1A1 2 n.s 87.0 Weakly correlated
140 MLT1E1A 2 n.s 99.0 Weakly correlated
141 MLT1F2 2 n.s 99.0 Weakly correlated
142 MLT1G1 2 n.s 99.0 Weakly correlated
143 MLT1H2 2 n.s 99.0 Weakly correlated
144 MLT1J2 2 n.s 99.0 Weakly correlated
145 Alu 1 n.s 74.0 Weakly correlated
146 AluYg6 1 * 15.2 Weakly correlated
147 AluYh9 1 *** 15.2 Weakly correlated
148 AluYi6 1 * 15.2 Weakly correlated
149 AluYk3 1 n.s 19.6 Weakly correlated
150 CR1-16_AMi 1 ** 319.0 Weakly correlated
151 ERVL-E-int 1 n.s 99.0 Weakly correlated
152 FLAM_A 1 n.s 74.0 Weakly correlated
153 HAL1ME 1 n.s 99.0 Weakly correlated
154 HERV16-int 1 n.s 99.0 Weakly correlated
155 HERVH48-int 1 n.s 28.9 Weakly correlated
156 HERVIP10FH-int 1 n.s 28.9 Weakly correlated
157 HERVK22-int 1 n.s 43.0 Highly correlated
158 L1HS 1 n.s 8.6 Weakly correlated
159 L1M3f 1 n.s 87.0 Weakly correlated
160 L1MA1 1 n.s 74.0 Weakly correlated
161 L1MA3 1 n.s 74.0 Weakly correlated
162 L1MA5 1 n.s 87.0 Weakly correlated
163 L1MA6 1 n.s 87.0 Weakly correlated
164 L1MB4 1 n.s 99.0 Weakly correlated
165 L1MB5 1 n.s 99.0 Weakly correlated
166 L1MC 1 n.s 99.0 Weakly correlated
167 L1MC1 1 n.s 99.0 Weakly correlated
168 L1MC2 1 n.s 99.0 Weakly correlated
169 L1MC3 1 n.s 99.0 Weakly correlated
170 L1MC5 1 n.s 99.0 Weakly correlated
171 L1MCa 1 n.s 99.0 Weakly correlated
172 L1MCb 1 n.s 99.0 Weakly correlated
173 L1MDb 1 n.s 99.0 Weakly correlated
174 L1ME1 1 n.s 99.0 Weakly correlated
175 L1ME3 1 n.s 99.0 Weakly correlated
176 L1ME3D 1 n.s 99.0 Weakly correlated
177 L1ME3F 1 n.s 99.0 Weakly correlated
178 L1ME4a 1 n.s 99.0 Weakly correlated
179 L1ME4c 1 n.s 99.0 Weakly correlated
180 L1ME5 1 n.s 99.0 Weakly correlated
181 L1MEc 1 n.s 99.0 Weakly correlated
182 L1P2 1 n.s 28.9 Weakly correlated
183 L1P4 1 n.s 74.0 Weakly correlated
184 L1PA15 1 n.s 74.0 Weakly correlated
185 L1PA15-16 1 n.s 74.0 Weakly correlated
186 L1PA17 1 n.s 74.0 Weakly correlated
187 L1PA2 1 n.s 15.2 Weakly correlated
188 L1PA5 1 n.s 19.6 Weakly correlated
189 L1PA8 1 n.s 74.0 Weakly correlated
190 L1PB 1 n.s 74.0 Weakly correlated
191 L1PB3 1 n.s 74.0 Weakly correlated
192 L2-1_AMi 1 * 319.0 Weakly correlated
193 L2-3_Crp 1 n.s 431.0 Weakly correlated
194 L3b 1 n.s 99.0 Weakly correlated
195 LTR103b_Mam 1 * 99.0 Weakly correlated
196 LTR10C 1 n.s 28.9 Weakly correlated
197 LTR10D 1 ** 28.9 Weakly correlated
198 LTR12D 1 n.s 19.6 Weakly correlated
199 LTR12E 1 * 19.6 Weakly correlated
200 LTR12F 1 n.s 28.9 Weakly correlated
201 LTR13 1 n.s 19.6 Weakly correlated
202 LTR14B 1 * 28.9 Weakly correlated
203 LTR16A2 1 n.s 99.0 Weakly correlated
204 LTR16E1 1 n.s 99.0 Weakly correlated
205 LTR16E2 1 n.s 99.0 Weakly correlated
206 LTR18C 1 *** 43.0 Highly correlated
207 LTR2 1 n.s 28.9 Weakly correlated
208 LTR25-int 1 n.s 43.0 Highly correlated
209 LTR27E 1 * 43.0 Highly correlated
210 LTR33A_ 1 n.s 99.0 Weakly correlated
211 LTR44 1 * 74.0 Weakly correlated
212 LTR49-int 1 n.s 74.0 Weakly correlated
213 LTR50 1 n.s 99.0 Weakly correlated
214 LTR5_Hs 1 n.s 0.0 Weakly correlated
215 LTR60B 1 * 74.0 Weakly correlated
216 LTR78 1 n.s 99.0 Weakly correlated
217 LTR85a 1 n.s 99.0 Weakly correlated
218 LTR85b 1 n.s 99.0 Weakly correlated
219 MER101B 1 ** 87.0 Weakly correlated
220 MER31B 1 n.s 99.0 Weakly correlated
221 MER34 1 n.s 87.0 Weakly correlated
222 MER41-int 1 n.s 74.0 Weakly correlated
223 MER4D 1 n.s 74.0 Weakly correlated
224 MER4E1 1 n.s 74.0 Weakly correlated
225 MER51E 1 ** 43.0 Highly correlated
226 MER52A 1 n.s 74.0 Weakly correlated
227 MER61E 1 * 43.0 Highly correlated
228 MER66B 1 n.s 43.0 Highly correlated
229 MER67A 1 * 99.0 Weakly correlated
230 MER76-int 1 ** 99.0 Weakly correlated
231 MER83 1 * 43.0 Highly correlated
232 MER83A-int 1 ** 99.0 Weakly correlated
233 MER84-int 1 * 74.0 Weakly correlated
234 MER92B 1 n.s 99.0 Weakly correlated
235 MIR1_Amn 1 n.s 319.0 Weakly correlated
236 MLT1A-int 1 * 99.0 Weakly correlated
237 MLT1A0 1 n.s 99.0 Weakly correlated
238 MLT1F1 1 n.s 99.0 Weakly correlated
239 MLT1G 1 n.s 99.0 Weakly correlated
240 MLT1H 1 n.s 99.0 Weakly correlated
241 MLT1J1 1 n.s 99.0 Weakly correlated
242 MLT1N2 1 n.s 99.0 Weakly correlated
243 MLT1O 1 n.s 99.0 Weakly correlated
244 MLT2A1 1 n.s 74.0 Weakly correlated
245 MLT2B3 1 n.s 99.0 Weakly correlated
246 MLT2B4 1 n.s 99.0 Weakly correlated
247 MLT2F 1 n.s 99.0 Weakly correlated
248 MSTA-int 1 n.s 43.0 Highly correlated
249 MSTB1 1 n.s 74.0 Weakly correlated
250 MSTB2 1 n.s 74.0 Weakly correlated
251 MSTC-int 1 * 74.0 Weakly correlated
252 MamGyp-int 1 n.s 99.0 Weakly correlated
253 MamGypLTR1b 1 n.s 99.0 Weakly correlated
254 MamGypLTR3 1 * 99.0 Weakly correlated
255 MamRep605 1 n.s 99.0 Weakly correlated
256 PABL_A 1 n.s 43.0 Highly correlated
257 PRIMA41-int 1 n.s 74.0 Weakly correlated
258 THE1B-int 1 n.s 43.0 Highly correlated
259 THE1C 1 n.s 43.0 Highly correlated
260 THE1C-int 1 n.s 43.0 Highly correlated
261 THE1D-int 1 n.s 28.9 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 LTR1E 214 **** 43.0 Highly correlated
2 LTR1B 187 **** 43.0 Highly correlated
3 LTR1D1 179 **** 43.0 Highly correlated
4 LTR1A1 170 **** 43.0 Highly correlated
5 LTR1F1 137 **** 43.0 Highly correlated
6 LTR1D 133 **** 43.0 Highly correlated
7 LTR28B 129 **** 43.0 Highly correlated
8 LTR1F 93 **** 43.0 Highly correlated
9 LTR1F2 91 **** 43.0 Highly correlated
10 LTR1 68 **** 43.0 Highly correlated
11 LTR28 49 **** 43.0 Highly correlated
12 LTR1B1 49 **** 43.0 Highly correlated
13 LTR1C1 47 **** 43.0 Highly correlated
14 LTR1B0 44 **** 43.0 Highly correlated
15 LTR1A2 35 **** 43.0 Highly correlated
16 SVA_D 31 **** 15.2 Weakly correlated
17 L2a 30 n.s 99.0 Weakly correlated
18 LTR1C3 28 **** 43.0 Highly correlated
19 L2c 26 n.s 99.0 Weakly correlated
20 L2b 21 n.s 99.0 Weakly correlated
21 LTR1C 16 **** 43.0 Highly correlated
22 L2 14 n.s 99.0 Weakly correlated
23 AluJb 9 n.s 74.0 Weakly correlated
24 L1ME2z 8 * 99.0 Weakly correlated
25 MLT1A 7 n.s 99.0 Weakly correlated
26 L1PA16 6 n.s 74.0 Weakly correlated
27 HAL1 6 n.s 99.0 Weakly correlated
28 SVA_F 5 ** 0.0 Weakly correlated
29 AluYj4 5 ** 0.0 Weakly correlated
30 L1ME3Cz 5 n.s 99.0 Weakly correlated
31 SVA_C 4 ** 15.2 Weakly correlated
32 HERVL-int 4 n.s 74.0 Weakly correlated
33 AluSx1 4 n.s 74.0 Weakly correlated
34 LTR52 4 *** 99.0 Weakly correlated
35 L1MB7 4 n.s 99.0 Weakly correlated
36 LTR16C 4 n.s 99.0 Weakly correlated
37 SVA_B 4 ** 15.2 Weakly correlated
38 L1MC4 4 n.s 99.0 Weakly correlated
39 LOR1a 4 *** 74.0 Weakly correlated
40 MIRc 4 n.s 99.0 Weakly correlated
41 FRAM 3 n.s 74.0 Weakly correlated
42 L1MB3 3 n.s 99.0 Weakly correlated
43 LTR10F 3 *** 28.9 Weakly correlated
44 SVA_E 3 ** 0.0 Weakly correlated
45 MIRb 3 n.s 99.0 Weakly correlated
46 L1MD1 3 n.s 99.0 Weakly correlated
47 L1PA7 3 n.s 74.0 Weakly correlated
48 L1PB1 3 n.s 74.0 Weakly correlated
49 LTR33 3 n.s 99.0 Weakly correlated
50 MLT1D 3 n.s 99.0 Weakly correlated
51 AluSg7 3 n.s 74.0 Weakly correlated
52 AluYa8 3 **** 15.2 Weakly correlated
53 L1ME3A 3 n.s 99.0 Weakly correlated
54 MER21C 3 n.s 99.0 Weakly correlated
55 MSTD 3 n.s 74.0 Weakly correlated
56 AluSq 2 n.s 74.0 Weakly correlated
57 L1M7 2 n.s 99.0 Weakly correlated
58 L1MEf 2 n.s 99.0 Weakly correlated
59 MIR 2 n.s 99.0 Weakly correlated
60 AluSc8 2 n.s 74.0 Weakly correlated
61 AluSx3 2 n.s 74.0 Weakly correlated
62 L1MA7 2 n.s 87.0 Weakly correlated
63 L1MB2 2 n.s 99.0 Weakly correlated
64 L1MEj 2 n.s 99.0 Weakly correlated
65 MLT1K 2 n.s 99.0 Weakly correlated
66 L1MC5a 2 n.s 99.0 Weakly correlated
67 MLT1J 2 n.s 99.0 Weakly correlated
68 L1MA4 2 n.s 87.0 Weakly correlated
69 LTR79 2 n.s 99.0 Weakly correlated
70 MSTB 2 n.s 43.0 Highly correlated
71 LTR16A 2 n.s 99.0 Weakly correlated
72 MLT1B 2 n.s 99.0 Weakly correlated
73 AluSq2 2 n.s 74.0 Weakly correlated
74 LTR16A1 2 n.s 99.0 Weakly correlated
75 AluSx 2 n.s 74.0 Weakly correlated
76 MER76 2 * 99.0 Weakly correlated
77 MIR3 2 n.s 99.0 Weakly correlated
78 MSTA 2 n.s 43.0 Highly correlated
79 L1MA9 2 n.s 99.0 Weakly correlated
80 LOR1b 2 * 74.0 Weakly correlated
81 MLT1F2 2 n.s 99.0 Weakly correlated
82 L1MEc 1 n.s 99.0 Weakly correlated
83 MER21-int 1 n.s 99.0 Weakly correlated
84 MER67A 1 * 99.0 Weakly correlated
85 MLT1H 1 n.s 99.0 Weakly correlated
86 MLT1J1 1 n.s 99.0 Weakly correlated
87 AluY 1 n.s 74.0 Weakly correlated
88 HERV9NC-int 1 n.s 19.6 Weakly correlated
89 HERVH48-int 1 n.s 28.9 Weakly correlated
90 L1PA15-16 1 n.s 74.0 Weakly correlated
91 LTR12E 1 * 19.6 Weakly correlated
92 MER4CL34 1 n.s 43.0 Highly correlated
93 MER4D 1 n.s 74.0 Weakly correlated
94 MLT1C 1 n.s 94.0 Weakly correlated
95 MLT1G 1 n.s 99.0 Weakly correlated
96 MamGyp-int 1 n.s 99.0 Weakly correlated
97 AluJr4 1 n.s 74.0 Weakly correlated
98 L1ME3D 1 n.s 99.0 Weakly correlated
99 L1ME4b 1 n.s 99.0 Weakly correlated
100 LTR12 1 n.s 28.9 Weakly correlated
101 LTR16E2 1 n.s 99.0 Weakly correlated
102 LTR23 1 * 74.0 Weakly correlated
103 MER101B 1 ** 87.0 Weakly correlated
104 MER34 1 n.s 87.0 Weakly correlated
105 MamGypLTR3 1 * 99.0 Weakly correlated
106 AluJr 1 n.s 74.0 Weakly correlated
107 L1M4 1 n.s 99.0 Weakly correlated
108 L1MA1 1 n.s 74.0 Weakly correlated
109 L1MA2 1 n.s 74.0 Weakly correlated
110 L1MA3 1 n.s 74.0 Weakly correlated
111 L1MCa 1 n.s 99.0 Weakly correlated
112 L1ME4c 1 n.s 99.0 Weakly correlated
113 L1MEg 1 n.s 99.0 Weakly correlated
114 L3b 1 n.s 99.0 Weakly correlated
115 LTR50 1 n.s 99.0 Weakly correlated
116 MER50 1 n.s 43.0 Highly correlated
117 MER83A-int 1 ** 99.0 Weakly correlated
118 HERVK22-int 1 n.s 43.0 Highly correlated
119 L1M1 1 n.s 74.0 Weakly correlated
120 L1M4b 1 n.s 99.0 Weakly correlated
121 L1M5 1 n.s 99.0 Weakly correlated
122 L1PA17 1 n.s 74.0 Weakly correlated
123 L3 1 n.s 99.0 Weakly correlated
124 LTR16A2 1 n.s 99.0 Weakly correlated
125 MER89 1 n.s 99.0 Weakly correlated
126 MLT1O 1 n.s 99.0 Weakly correlated
127 MamGypLTR1d 1 * 99.0 Weakly correlated
128 AluJo 1 n.s 74.0 Weakly correlated
129 L1MA5 1 n.s 87.0 Weakly correlated
130 L1MD2 1 n.s 99.0 Weakly correlated
131 L1PA15 1 n.s 74.0 Weakly correlated
132 LTR12F 1 n.s 28.9 Weakly correlated
133 LTR60B 1 * 74.0 Weakly correlated
134 LTR78 1 n.s 99.0 Weakly correlated
135 MER21A 1 n.s 74.0 Weakly correlated
136 MamGypLTR1b 1 n.s 99.0 Weakly correlated
137 AluSp 1 n.s 74.0 Weakly correlated
138 HERVIP10FH-int 1 n.s 28.9 Weakly correlated
139 L1MA6 1 n.s 87.0 Weakly correlated
140 L1MB8 1 n.s 99.0 Weakly correlated
141 LTR103b_Mam 1 * 99.0 Weakly correlated
142 LTR27D 1 * 43.0 Highly correlated
143 LTR85a 1 n.s 99.0 Weakly correlated
144 MER31B 1 n.s 99.0 Weakly correlated
145 MLT2F 1 n.s 99.0 Weakly correlated
146 AluSz6 1 n.s 74.0 Weakly correlated
147 AluYh9 1 *** 15.2 Weakly correlated
148 L1ME1 1 n.s 99.0 Weakly correlated
149 L1ME3G 1 n.s 99.0 Weakly correlated
150 L1MEd 1 n.s 99.0 Weakly correlated
151 L1MEi 1 n.s 99.0 Weakly correlated
152 L1PA4 1 n.s 19.6 Weakly correlated
153 LTR14B 1 * 28.9 Weakly correlated
154 LTR55 1 * 99.0 Weakly correlated
155 MLT1F 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 L2B 99.0 Weakly correlated
2 LTR1 43.0 Highly correlated
3 LTR1A1 43.0 Highly correlated
4 LTR1B 43.0 Highly correlated
5 LTR1B0 43.0 Highly correlated
6 LTR1B1 43.0 Highly correlated
7 LTR1C 43.0 Highly correlated
8 LTR1C1 43.0 Highly correlated
9 LTR1C3 43.0 Highly correlated
10 LTR1D 43.0 Highly correlated
11 LTR1D1 43.0 Highly correlated
12 LTR1E 43.0 Highly correlated
13 LTR1F 43.0 Highly correlated
14 LTR1F1 43.0 Highly correlated
15 LTR1F2 43.0 Highly correlated
16 LTR28 43.0 Highly correlated
17 LTR28B 43.0 Highly correlated
18 SVA_D 15.2 Weakly correlated