ZRdb KZFP & Repeats
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Human_ZNF317

  • Protein
    Zinc finger protein 317
  • Length
    595
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    99.0 Mya
  • Time of Changing in binding specificity
    99.0 Mya
  • Uniprot_ID
    Q96PQ6
  • NCBI_ID
    57693
Sequence:
MAALSPTFATSTQDSTCLQDSEFPVSSKDHSCPQNLDLFVCSGLEPHTPSVGSQESVTFQDVAVDFTEKEWPLLDSSQRKLYKDVMLENYSNLTSLGYQVGKPSLISHLEQEEEPRTEERGAHQGACADWETPSKTKWSLLMEDIFGKETPSGVTMERAGLGEKSTEYAHLFEVFGMDPHLTQPMGRHAGKRPYHRRDYGVAFKGRPHLTQHMSMYDGRKMHECHQCQKAFTTSASLTRHRRIHTGEKPYECSDCGKAFNDPSALRSHARTHLKEKPFDCSQCGNAFRTLSALKIHMRVHTGERPYKCDQCGKAYGRSCHLIAHKRTHTGERPYECHDCGKAFQHPSHLKEHVRNHTGEKPYACTQCGKAFRWKSNFNLHKKNHMVEKTYECKECGKSFGDLVSRRKHMRIHIVKKPVECRQCGKTFRNQSILKTHMNSHTGEKPYGCDLCGKAFSASSNLTAHRKIHTQERRYECAACGKVFGDYLSRRRHMSVHLVKKRVECRQCGKAFRNQSTLKTHMRSHTGEKPYECDHCGKAFSIGSNLNVHRRIHTGEKPYECLVCGKAFSDHSSLRSHVKTHRGEKLFVSSVWKRLQ
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
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# Domain name Pos
1 KRAB 57..128
2 C2h2 222..244
3 C2h2 250..272
4 C2h2 278..300
5 C2h2 306..328
6 C2h2 334..356
7 C2h2 362..384
8 C2h2 390..412
9 C2h2 418..440
10 C2h2 446..468
11 C2h2 474..496
12 C2h2 502..524
13 C2h2 530..552
14 C2h2 558..580
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1MEc 1261 **** 99.0 Highly correlated
2 L2a 1248 **** 99.0 Highly correlated
3 L1MEg 1109 **** 99.0 Highly correlated
4 MIRb 1043 **** 99.0 Highly correlated
5 L2c 966 **** 99.0 Highly correlated
6 L1MEf 923 **** 99.0 Highly correlated
7 L1M4 755 **** 99.0 Highly correlated
8 L1MEd 735 **** 99.0 Highly correlated
9 MIR 706 **** 99.0 Highly correlated
10 L1ME1 703 **** 99.0 Highly correlated
11 L2b 614 **** 99.0 Highly correlated
12 L1PB1 606 **** 74.0 Weakly correlated
13 L1MB7 580 **** 99.0 Highly correlated
14 L2 553 **** 99.0 Highly correlated
15 L1M4b 504 **** 99.0 Highly correlated
16 AluJb 462 n.s 74.0 Weakly correlated
17 HAL1 449 **** 99.0 Highly correlated
18 MIRc 427 **** 99.0 Highly correlated
19 L1PA7 386 ** 74.0 Weakly correlated
20 MIR3 368 **** 99.0 Highly correlated
21 L1MDa 365 **** 99.0 Highly correlated
22 L1MB8 356 **** 99.0 Highly correlated
23 AluSx 353 n.s 74.0 Weakly correlated
24 AluSx1 332 n.s 74.0 Weakly correlated
25 AluSz 327 n.s 74.0 Weakly correlated
26 L3 317 **** 99.0 Highly correlated
27 L1PA16 305 **** 74.0 Weakly correlated
28 L1M5 274 n.s 99.0 Highly correlated
29 L1ME2 261 **** 99.0 Highly correlated
30 AluJr 260 n.s 74.0 Weakly correlated
31 AluY 258 n.s 74.0 Weakly correlated
32 L1M1 248 **** 74.0 Weakly correlated
33 L1MCa 248 **** 99.0 Highly correlated
34 L1PBa 235 **** 74.0 Weakly correlated
35 AluJo 231 n.s 74.0 Weakly correlated
36 L1PA5 231 n.s 19.6 Weakly correlated
37 L1MB5 228 **** 99.0 Highly correlated
38 L1PA6 224 ** 28.9 Weakly correlated
39 L1M4a1 211 **** 99.0 Highly correlated
40 L1PA13 210 **** 74.0 Weakly correlated
41 L1MC1 202 **** 99.0 Highly correlated
42 L1MC4 202 **** 99.0 Highly correlated
43 L1ME3A 182 **** 99.0 Highly correlated
44 L1PA10 182 **** 74.0 Weakly correlated
45 L1PA4 182 n.s 19.6 Weakly correlated
46 L1MD2 178 **** 99.0 Highly correlated
47 L1ME3 177 **** 99.0 Highly correlated
48 L1M4a2 175 **** 99.0 Highly correlated
49 L1MB3 171 **** 99.0 Highly correlated
50 L1MEi 163 **** 99.0 Highly correlated
51 AluSq2 160 n.s 74.0 Weakly correlated
52 L1MC5a 158 **** 99.0 Highly correlated
53 MLT1D 157 *** 99.0 Highly correlated
54 L1M2 156 **** 99.0 Highly correlated
55 AluSz6 153 n.s 74.0 Weakly correlated
56 L1MA3 153 n.s 74.0 Weakly correlated
57 L1MD1 153 **** 99.0 Highly correlated
58 L1ME4a 152 ** 99.0 Highly correlated
59 L1MB4 151 **** 99.0 Highly correlated
60 L1MC5 151 **** 99.0 Highly correlated
61 L1PA15 151 * 74.0 Weakly correlated
62 L1MC3 145 * 99.0 Highly correlated
63 AluSp 142 n.s 74.0 Weakly correlated
64 L1M4c 141 **** 99.0 Highly correlated
65 L1PA3 134 n.s 19.6 Weakly correlated
66 MLT1H 133 **** 99.0 Highly correlated
67 L1ME4b 130 **** 99.0 Highly correlated
68 MLT1K 130 **** 99.0 Highly correlated
69 L1PA8 129 n.s 74.0 Weakly correlated
70 MLT1J 124 **** 99.0 Highly correlated
71 L1MA9 115 n.s 99.0 Highly correlated
72 L1MA2 114 n.s 74.0 Weakly correlated
73 L1MCc 112 **** 99.0 Highly correlated
74 L1PA17 112 **** 74.0 Weakly correlated
75 MLT1C 108 n.s 94.0 Weakly correlated
76 L1MA4 107 n.s 87.0 Weakly correlated
77 L1PREC2 105 n.s 43.0 Weakly correlated
78 MamRTE1 100 **** 99.0 Highly correlated
79 ERVL-E-int 99 **** 99.0 Highly correlated
80 L1ME3B 99 **** 99.0 Highly correlated
81 L1MA4A 96 n.s 87.0 Weakly correlated
82 MLT1I 96 **** 99.0 Highly correlated
83 MLT1A0 94 n.s 99.0 Highly correlated
84 L1MC4a 92 *** 99.0 Highly correlated
85 L1PA11 91 ** 74.0 Weakly correlated
86 L1ME3G 90 ** 99.0 Highly correlated
87 FLAM_C 89 **** 74.0 Weakly correlated
88 AluSc 88 n.s 74.0 Weakly correlated
89 L1MB2 87 ** 99.0 Highly correlated
90 AluSg 86 n.s 74.0 Weakly correlated
91 L1ME3Cz 86 *** 99.0 Highly correlated
92 MLT1L 85 **** 99.0 Highly correlated
93 L1P2 84 **** 28.9 Weakly correlated
94 L1PB4 81 n.s 99.0 Highly correlated
95 AluSc8 80 n.s 74.0 Weakly correlated
96 L1MC2 80 *** 99.0 Highly correlated
97 L1ME2z 77 **** 99.0 Highly correlated
98 L1PB2 77 **** 74.0 Weakly correlated
99 L1PA8A 74 ** 74.0 Weakly correlated
100 AluSx3 73 n.s 74.0 Weakly correlated
101 HAL1ME 73 **** 99.0 Highly correlated
102 L1MA8 73 n.s 87.0 Weakly correlated
103 L3b 72 **** 99.0 Highly correlated
104 MLT1B 72 n.s 99.0 Highly correlated
105 LTR33 71 **** 99.0 Highly correlated
106 THE1B 71 n.s 43.0 Weakly correlated
107 MLT1H2 70 **** 99.0 Highly correlated
108 L1PB3 69 *** 74.0 Weakly correlated
109 L1ME3E 65 **** 99.0 Highly correlated
110 AluJr4 64 n.s 74.0 Weakly correlated
111 L1MA5 64 ** 87.0 Weakly correlated
112 L1MD 63 * 99.0 Highly correlated
113 L1P3 63 ** 74.0 Weakly correlated
114 L1MA7 59 n.s 87.0 Weakly correlated
115 L1MEh 59 **** 99.0 Highly correlated
116 L1MD3 57 **** 99.0 Highly correlated
117 L1P1 57 n.s 19.6 Weakly correlated
118 LTR12C 57 n.s 19.6 Weakly correlated
119 MLT1J2 57 **** 99.0 Highly correlated
120 MamSINE1 57 **** 99.0 Highly correlated
121 L1ME3D 56 **** 99.0 Highly correlated
122 ERV3-16A3_I-int 55 n.s 99.0 Highly correlated
123 L1M3 55 * 99.0 Highly correlated
124 L1PBa1 54 **** 74.0 Weakly correlated
125 L1PA14 51 n.s 74.0 Weakly correlated
126 ERVL-B4-int 50 n.s 99.0 Highly correlated
127 MSTA 48 n.s 43.0 Weakly correlated
128 L1MA1 47 n.s 74.0 Weakly correlated
129 LTR2 47 **** 28.9 Weakly correlated
130 L1MCb 46 **** 99.0 Highly correlated
131 L1ME4c 46 ** 99.0 Highly correlated
132 L1PA15-16 46 **** 74.0 Weakly correlated
133 AluSq 45 n.s 74.0 Weakly correlated
134 MLT1F 45 **** 99.0 Highly correlated
135 MLT1J1 45 **** 99.0 Highly correlated
136 MIR1_Amn 44 **** 319.0 Weakly correlated
137 THE1B-int 43 n.s 43.0 Weakly correlated
138 HAL1b 41 *** 99.0 Highly correlated
139 L1MC 41 n.s 99.0 Highly correlated
140 L1ME3F 41 ** 99.0 Highly correlated
141 MLT1F2 41 n.s 99.0 Highly correlated
142 L1MA5A 40 * 87.0 Weakly correlated
143 L1MA6 39 n.s 87.0 Weakly correlated
144 L1MEj 39 **** 99.0 Highly correlated
145 MLT1E1A 38 **** 99.0 Highly correlated
146 MamRep605 38 **** 99.0 Highly correlated
147 FLAM_A 37 * 74.0 Weakly correlated
148 FRAM 36 **** 74.0 Weakly correlated
149 L1PA2 36 n.s 15.2 Weakly correlated
150 L1MB1 35 n.s 99.0 Highly correlated
151 MLT1A 35 n.s 99.0 Highly correlated
152 L1M7 34 *** 99.0 Highly correlated
153 L1P4 32 n.s 74.0 Weakly correlated
154 MER21C 32 n.s 99.0 Highly correlated
155 MER4-int 32 n.s 74.0 Weakly correlated
156 L1M8 31 **** 99.0 Highly correlated
157 MSTB1 31 n.s 74.0 Weakly correlated
158 L1M2a 30 **** 87.0 Weakly correlated
159 LTR16C 30 n.s 99.0 Highly correlated
160 AluSx4 29 n.s 74.0 Weakly correlated
161 L1M6 29 n.s 99.0 Highly correlated
162 LTR16A 29 * 99.0 Highly correlated
163 LTR78 29 n.s 99.0 Highly correlated
164 MLT1O 29 *** 99.0 Highly correlated
165 L4_A_Mam 28 n.s 99.0 Highly correlated
166 LTR50 28 **** 99.0 Highly correlated
167 LTR67B 28 **** 99.0 Highly correlated
168 MLT1N2 28 ** 99.0 Highly correlated
169 HERVL-int 27 n.s 74.0 Weakly correlated
170 L1ME3C 27 * 99.0 Highly correlated
171 L1ME5 27 ** 99.0 Highly correlated
172 L4_C_Mam 27 * 99.0 Highly correlated
173 LTR8 27 n.s 43.0 Weakly correlated
174 MLT1F1 27 ** 99.0 Highly correlated
175 MSTD 27 n.s 74.0 Weakly correlated
176 LTR2C 26 **** 19.6 Weakly correlated
177 MLT1G3 26 ** 99.0 Highly correlated
178 L2-1_AMi 25 **** 319.0 Weakly correlated
179 LTR16A1 25 *** 99.0 Highly correlated
180 MER21A 25 *** 74.0 Weakly correlated
181 MER57A1 25 **** 43.0 Weakly correlated
182 AmnSINE1 24 **** 319.0 Weakly correlated
183 LTR17 24 **** 28.9 Weakly correlated
184 MLT1E2 24 n.s 99.0 Highly correlated
185 MLT1H1 24 n.s 99.0 Highly correlated
186 MLT2B1 24 n.s 99.0 Highly correlated
187 MLT2F 24 **** 99.0 Highly correlated
188 MSTB 24 n.s 43.0 Weakly correlated
189 L1MA10 23 n.s 99.0 Highly correlated
190 MLT1G1 23 n.s 99.0 Highly correlated
191 HAL1M8 22 * 99.0 Highly correlated
192 LTR33B 22 **** 99.0 Highly correlated
193 MLT1A1 22 n.s 87.0 Weakly correlated
194 L1M3f 21 *** 87.0 Weakly correlated
195 L1MDb 21 *** 99.0 Highly correlated
196 L1MEb 21 ** 99.0 Highly correlated
197 MER41-int 21 n.s 74.0 Weakly correlated
198 MER50 21 n.s 43.0 Weakly correlated
199 MLT2B3 21 n.s 99.0 Highly correlated
200 THE1A-int 21 n.s 43.0 Weakly correlated
201 AluSg4 20 n.s 74.0 Weakly correlated
202 AluYj4 20 * 0.0 Weakly correlated
203 AluYm1 20 n.s 19.6 Weakly correlated
204 L1PBb 20 **** 74.0 Weakly correlated
205 MLT2B4 20 n.s 99.0 Highly correlated
206 THE1D 20 n.s 43.0 Weakly correlated
207 LTR40a 19 * 99.0 Highly correlated
208 LTR8B 19 * 43.0 Weakly correlated
209 MamGypsy2-I 19 ** 99.0 Highly correlated
210 Plat_L3 19 *** 99.0 Highly correlated
211 AluSc5 18 n.s 74.0 Weakly correlated
212 L1M2c 18 **** 87.0 Weakly correlated
213 L1MEg2 18 **** 99.0 Highly correlated
214 LFSINE_Vert 18 **** 319.0 Weakly correlated
215 MLT1G 18 n.s 99.0 Highly correlated
216 MLT2D 18 n.s 99.0 Highly correlated
217 THE1C 18 n.s 43.0 Weakly correlated
218 AluSg7 17 n.s 74.0 Weakly correlated
219 FAM 17 * 87.0 Weakly correlated
220 HERVK-int 17 ** 28.9 Weakly correlated
221 L1M3c 17 * 99.0 Highly correlated
222 LTR26 17 **** 74.0 Weakly correlated
223 LTR33A_ 17 ** 99.0 Highly correlated
224 LTR40b 17 **** 99.0 Highly correlated
225 MLT2B2 17 n.s 99.0 Highly correlated
226 LTR16 16 n.s 99.0 Highly correlated
227 LTR16A2 16 ** 99.0 Highly correlated
228 MER57A-int 16 n.s 43.0 Weakly correlated
229 MER68 16 * 99.0 Highly correlated
230 MER77B 16 ** 99.0 Highly correlated
231 MLT1E3 16 n.s 99.0 Highly correlated
232 MSTB2 16 * 74.0 Weakly correlated
233 THE1D-int 16 n.s 28.9 Weakly correlated
234 CR1_Mam 15 *** 99.0 Highly correlated
235 ERVL-int 15 * 99.0 Highly correlated
236 HERVK22-int 15 * 43.0 Weakly correlated
237 L1PB 15 n.s 74.0 Weakly correlated
238 L2-3_Crp 15 *** 431.0 Weakly correlated
239 LTR41 15 *** 99.0 Highly correlated
240 MER39 15 n.s 74.0 Weakly correlated
241 MER65-int 15 * 87.0 Weakly correlated
242 HERVL40-int 14 * 99.0 Highly correlated
243 LTR16E2 14 n.s 99.0 Highly correlated
244 MER90a 14 ** 99.0 Highly correlated
245 MLT1M 14 ** 99.0 Highly correlated
246 Alu 13 *** 74.0 Weakly correlated
247 HUERS-P3-int 13 n.s 43.0 Weakly correlated
248 L1P4a 13 n.s 74.0 Weakly correlated
249 MER21B 13 n.s 99.0 Highly correlated
250 MER41B 13 n.s 74.0 Weakly correlated
251 MER57B2 13 *** 43.0 Weakly correlated
252 MLT1J-int 13 * 99.0 Highly correlated
253 L1HS 12 n.s 8.6 Weakly correlated
254 L4_B_Mam 12 n.s 99.0 Highly correlated
255 LTR28C 12 *** 43.0 Weakly correlated
256 LTR78B 12 n.s 99.0 Highly correlated
257 LTR79 12 n.s 99.0 Highly correlated
258 LTR82A 12 ** 99.0 Highly correlated
259 MER31A 12 * 87.0 Weakly correlated
260 MER74A 12 n.s 99.0 Highly correlated
261 MER89 12 * 99.0 Highly correlated
262 MLT2A2 12 n.s 74.0 Weakly correlated
263 THE1C-int 12 n.s 43.0 Weakly correlated
264 CR1-3_Croc 11 **** 319.0 Weakly correlated
265 L1M2a1 11 **** 79.0 Weakly correlated
266 L1PA12 11 n.s 74.0 Weakly correlated
267 LTR16B2 11 n.s 99.0 Highly correlated
268 LTR2B 11 **** 19.6 Weakly correlated
269 LTR37B 11 n.s 99.0 Highly correlated
270 LTR85a 11 * 99.0 Highly correlated
271 MER34A 11 * 99.0 Highly correlated
272 MER4A1 11 n.s 74.0 Weakly correlated
273 MER4D1 11 n.s 74.0 Weakly correlated
274 MER57-int 11 n.s 87.0 Weakly correlated
275 MER65C 11 *** 74.0 Weakly correlated
276 MER66B 11 n.s 43.0 Weakly correlated
277 MSTA-int 11 n.s 43.0 Weakly correlated
278 MamGypLTR3a 11 ** 99.0 Highly correlated
279 HERVK9-int 10 n.s 28.9 Weakly correlated
280 LTR10A 10 **** 28.9 Weakly correlated
281 LTR16D 10 ** 99.0 Highly correlated
282 LTR16E1 10 n.s 99.0 Highly correlated
283 LTR25-int 10 n.s 43.0 Weakly correlated
284 LTR33A 10 n.s 99.0 Highly correlated
285 LTR41B 10 ** 99.0 Highly correlated
286 LTR47A 10 *** 74.0 Weakly correlated
287 LTR85b 10 ** 99.0 Highly correlated
288 MER4D 10 n.s 74.0 Weakly correlated
289 MER57B1 10 * 43.0 Weakly correlated
290 PABL_A-int 10 * 74.0 Weakly correlated
291 AluYa5 9 n.s 15.2 Weakly correlated
292 AluYc 9 n.s 74.0 Weakly correlated
293 AluYh3 9 n.s 15.2 Weakly correlated
294 HERV16-int 9 n.s 99.0 Highly correlated
295 HERVK14-int 9 * 28.9 Weakly correlated
296 L1M3e 9 n.s 99.0 Highly correlated
297 L1MEg1 9 * 99.0 Highly correlated
298 LOR1-int 9 n.s 74.0 Weakly correlated
299 LTR16B 9 ** 99.0 Highly correlated
300 LTR18A 9 **** 43.0 Weakly correlated
301 LTR32 9 n.s 43.0 Weakly correlated
302 LTR4 9 **** 28.9 Weakly correlated
303 LTR49-int 9 n.s 74.0 Weakly correlated
304 LTR76 9 **** 74.0 Weakly correlated
305 LTR81A 9 ** 99.0 Highly correlated
306 MER41C 9 * 74.0 Weakly correlated
307 MLT1H-int 9 * 99.0 Highly correlated
308 MLT1J1-int 9 ** 99.0 Highly correlated
309 MLT2C1 9 n.s 99.0 Highly correlated
310 MSTB-int 9 n.s 43.0 Weakly correlated
311 MamGypLTR1a 9 ** 99.0 Highly correlated
312 PABL_B 9 *** 43.0 Weakly correlated
313 AluYb8 8 n.s 15.2 Weakly correlated
314 L1M3de 8 n.s 99.0 Highly correlated
315 LTR101_Mam 8 n.s 99.0 Highly correlated
316 LTR12_ 8 n.s 28.9 Weakly correlated
317 LTR13 8 n.s 19.6 Weakly correlated
318 LTR16B1 8 n.s 99.0 Highly correlated
319 LTR1D1 8 ** 43.0 Weakly correlated
320 LTR7 8 n.s 19.6 Weakly correlated
321 LTR81B 8 * 99.0 Highly correlated
322 MER66C 8 ** 43.0 Weakly correlated
323 MER90 8 * 99.0 Highly correlated
324 MER9a3 8 * 28.9 Weakly correlated
325 MLT1D-int 8 n.s 99.0 Highly correlated
326 MLT2A1 8 n.s 74.0 Weakly correlated
327 MamGypLTR1b 8 * 99.0 Highly correlated
328 MamGypLTR3 8 *** 99.0 Highly correlated
329 MamRep1527 8 n.s 99.0 Highly correlated
330 SVA_B 8 n.s 15.2 Weakly correlated
331 AluYf1 7 n.s 19.6 Weakly correlated
332 ERV3-16A3_LTR 7 n.s 99.0 Highly correlated
333 L1M6B 7 ** 99.0 Highly correlated
334 LTR1B1 7 *** 43.0 Weakly correlated
335 LTR1D 7 * 43.0 Weakly correlated
336 LTR40c 7 * 99.0 Highly correlated
337 LTR41C 7 * 99.0 Highly correlated
338 LTR44 7 **** 74.0 Weakly correlated
339 LTR49 7 n.s 74.0 Weakly correlated
340 LTR53 7 * 99.0 Highly correlated
341 LTR55 7 ** 99.0 Highly correlated
342 LTR7B 7 n.s 28.9 Weakly correlated
343 LTR87 7 * 99.0 Highly correlated
344 LTR88b 7 n.s 99.0 Highly correlated
345 LTR9 7 n.s 43.0 Weakly correlated
346 MER21-int 7 n.s 99.0 Highly correlated
347 HERV17-int 6 n.s 28.9 Weakly correlated
348 HERV3-int 6 n.s 28.9 Weakly correlated
349 LTR12D 6 n.s 19.6 Weakly correlated
350 LTR13A 6 * 28.9 Weakly correlated
351 LTR26C 6 ** 0.0 Weakly correlated
352 LTR27C 6 ** 43.0 Weakly correlated
353 LTR33C 6 n.s 99.0 Highly correlated
354 LTR37A 6 n.s 99.0 Highly correlated
355 LTR54 6 n.s 74.0 Weakly correlated
356 LTR56 6 n.s 74.0 Weakly correlated
357 LTR84b 6 n.s 99.0 Highly correlated
358 LTR8A 6 n.s 43.0 Weakly correlated
359 LTR9B 6 n.s 43.0 Weakly correlated
360 MER31B 6 n.s 99.0 Highly correlated
361 MER34 6 n.s 87.0 Weakly correlated
362 MER34-int 6 * 99.0 Highly correlated
363 MER4B-int 6 n.s 99.0 Highly correlated
364 MER50-int 6 n.s 43.0 Weakly correlated
365 MER51A 6 n.s 43.0 Weakly correlated
366 MER52A 6 n.s 74.0 Weakly correlated
367 MER52C 6 n.s 74.0 Weakly correlated
368 MER68B 6 * 99.0 Highly correlated
369 MER77 6 n.s 99.0 Highly correlated
370 MLT1E1 6 n.s 99.0 Highly correlated
371 MLT1I-int 6 n.s 99.0 Highly correlated
372 MamRep1151 6 n.s 99.0 Highly correlated
373 SVA_A 6 n.s 19.6 Weakly correlated
374 X6B_LINE 6 ** 99.0 Highly correlated
375 AluYk11 5 ** 15.2 Weakly correlated
376 AmnSINE2 5 *** 319.0 Weakly correlated
377 CR1-L3A_Croc 5 **** 319.0 Weakly correlated
378 HERVE_a-int 5 n.s 28.9 Weakly correlated
379 HERVH48-int 5 n.s 28.9 Weakly correlated
380 L1M3a 5 n.s 99.0 Highly correlated
381 L1MEa 5 * 99.0 Highly correlated
382 L1P5 5 * 74.0 Weakly correlated
383 LTR104_Mam 5 n.s 99.0 Highly correlated
384 LTR1A2 5 n.s 43.0 Weakly correlated
385 LTR24 5 ** 74.0 Weakly correlated
386 LTR26B 5 **** 74.0 Weakly correlated
387 LTR36 5 n.s 74.0 Weakly correlated
388 LTR39 5 n.s 43.0 Weakly correlated
389 LTR57 5 ** 74.0 Weakly correlated
390 LTR66 5 * 43.0 Weakly correlated
391 LTR7Y 5 ** 8.6 Weakly correlated
392 LTR86A1 5 * 99.0 Highly correlated
393 MER110-int 5 n.s 99.0 Highly correlated
394 MER34A1 5 n.s 99.0 Highly correlated
395 MER34C2 5 n.s 74.0 Weakly correlated
396 MER49 5 n.s 43.0 Weakly correlated
397 MER4CL34 5 n.s 43.0 Weakly correlated
398 MER51B 5 n.s 43.0 Weakly correlated
399 MER57F 5 * 74.0 Weakly correlated
400 MER61-int 5 n.s 43.0 Weakly correlated
401 MER95 5 **** 99.0 Highly correlated
402 MLT1J2-int 5 n.s 99.0 Highly correlated
403 MSTC 5 n.s 74.0 Weakly correlated
404 MamGyp-int 5 n.s 99.0 Highly correlated
405 MamGypLTR1c 5 n.s 99.0 Highly correlated
406 MamGypsy2-LTR 5 ** 99.0 Highly correlated
407 Penelope1_Vert 5 ** 319.0 Weakly correlated
408 THE1A 5 n.s 43.0 Weakly correlated
409 X6A_LINE 5 * 99.0 Highly correlated
410 X7A_LINE 5 * 319.0 Weakly correlated
411 AluSq10 4 n.s 74.0 Weakly correlated
412 CR1-16_AMi 4 ** 319.0 Weakly correlated
413 HERVFH19-int 4 n.s 43.0 Weakly correlated
414 HERVH-int 4 n.s 28.9 Weakly correlated
415 HERVI-int 4 n.s 28.9 Weakly correlated
416 HERVP71A-int 4 n.s 43.0 Weakly correlated
417 L5 4 n.s 99.0 Highly correlated
418 LOR1a 4 n.s 74.0 Weakly correlated
419 LTR12F 4 n.s 28.9 Weakly correlated
420 LTR14A 4 ** 28.9 Weakly correlated
421 LTR16D2 4 * 99.0 Highly correlated
422 LTR19B 4 n.s 43.0 Weakly correlated
423 LTR23 4 n.s 74.0 Weakly correlated
424 LTR26D 4 ** 0.0 Weakly correlated
425 LTR43 4 n.s 74.0 Weakly correlated
426 LTR45B 4 n.s 74.0 Weakly correlated
427 LTR62 4 n.s 74.0 Weakly correlated
428 LTR88c 4 n.s 99.0 Highly correlated
429 MER101-int 4 n.s 74.0 Weakly correlated
430 MER110 4 n.s 99.0 Highly correlated
431 MER11B 4 n.s 19.6 Weakly correlated
432 MER31-int 4 n.s 99.0 Highly correlated
433 MER34B 4 n.s 87.0 Weakly correlated
434 MER41A 4 n.s 74.0 Weakly correlated
435 MER41G 4 ** 74.0 Weakly correlated
436 MER48 4 ** 28.9 Weakly correlated
437 MER4A1_ 4 n.s 74.0 Weakly correlated
438 MER57D 4 n.s 87.0 Weakly correlated
439 MER66-int 4 n.s 43.0 Weakly correlated
440 MER66D 4 ** 43.0 Weakly correlated
441 MER70-int 4 n.s 99.0 Highly correlated
442 MER72 4 n.s 43.0 Weakly correlated
443 MER83 4 n.s 43.0 Weakly correlated
444 MER87 4 ** 43.0 Weakly correlated
445 MLT1F-int 4 n.s 99.0 Highly correlated
446 MLT2C2 4 n.s 99.0 Highly correlated
447 PABL_B-int 4 n.s 74.0 Weakly correlated
448 SVA_D 4 n.s 15.2 Weakly correlated
449 X2_LINE 4 *** 319.0 Weakly correlated
450 AluSq4 3 n.s 74.0 Weakly correlated
451 AluYc3 3 n.s 74.0 Weakly correlated
452 AluYd8 3 * 15.2 Weakly correlated
453 AluYh9 3 **** 15.2 Weakly correlated
454 AluYi6 3 n.s 15.2 Weakly correlated
455 ERV24B_Prim-int 3 n.s 74.0 Weakly correlated
456 HERVIP10F-int 3 n.s 28.9 Weakly correlated
457 HUERS-P3b-int 3 n.s 43.0 Weakly correlated
458 L1P4d 3 n.s 74.0 Weakly correlated
459 LTR107_Mam 3 n.s 99.0 Highly correlated
460 LTR108e_Mam 3 * 99.0 Highly correlated
461 LTR12 3 n.s 28.9 Weakly correlated
462 LTR14B 3 n.s 28.9 Weakly correlated
463 LTR1C1 3 ** 43.0 Weakly correlated
464 LTR22A 3 * 43.0 Weakly correlated
465 LTR22E 3 * 28.9 Weakly correlated
466 LTR24C 3 n.s 74.0 Weakly correlated
467 LTR2752 3 n.s 43.0 Weakly correlated
468 LTR27B 3 * 43.0 Weakly correlated
469 LTR28B 3 n.s 43.0 Weakly correlated
470 LTR38B 3 n.s 74.0 Weakly correlated
471 LTR48 3 n.s 74.0 Weakly correlated
472 LTR48B 3 n.s 74.0 Weakly correlated
473 LTR52 3 n.s 99.0 Highly correlated
474 LTR65 3 n.s 99.0 Highly correlated
475 LTR68 3 n.s 99.0 Highly correlated
476 LTR75 3 n.s 99.0 Highly correlated
477 LTR75B 3 * 99.0 Highly correlated
478 LTR81 3 * 99.0 Highly correlated
479 LTR82B 3 n.s 99.0 Highly correlated
480 LTR83 3 n.s 99.0 Highly correlated
481 LTR88a 3 n.s 99.0 Highly correlated
482 LTR89 3 n.s 99.0 Highly correlated
483 MER39B 3 n.s 74.0 Weakly correlated
484 MER50B 3 n.s 43.0 Weakly correlated
485 MER52D 3 n.s 74.0 Weakly correlated
486 MER57E1 3 n.s 87.0 Weakly correlated
487 MER61C 3 n.s 43.0 Weakly correlated
488 MER70A 3 n.s 87.0 Weakly correlated
489 MER84-int 3 n.s 74.0 Weakly correlated
490 MLT1-int 3 * 99.0 Highly correlated
491 MLT1A-int 3 n.s 99.0 Highly correlated
492 MLT1E 3 n.s 99.0 Highly correlated
493 MamGypLTR2c 3 n.s 99.0 Highly correlated
494 Mam_R4 3 n.s 99.0 Highly correlated
495 SVA_F 3 n.s 0.0 Weakly correlated
496 X7B_LINE 3 n.s 319.0 Weakly correlated
497 X7C_LINE 3 * 319.0 Weakly correlated
498 AluYb9 2 n.s 15.2 Weakly correlated
499 AluYe6 2 n.s 74.0 Weakly correlated
500 AluYk3 2 n.s 19.6 Weakly correlated
501 AluYk4 2 n.s 15.2 Weakly correlated
502 ERV24_Prim-int 2 n.s 74.0 Weakly correlated
503 ERVL47-int 2 n.s 74.0 Weakly correlated
504 HERV9NC-int 2 n.s 19.6 Weakly correlated
505 HERVIP10FH-int 2 n.s 28.9 Weakly correlated
506 HERVK11-int 2 n.s 28.9 Weakly correlated
507 HERVK13-int 2 n.s 19.6 Weakly correlated
508 HERVK14C-int 2 n.s 28.9 Weakly correlated
509 HERVL18-int 2 n.s 43.0 Weakly correlated
510 HUERS-P1-int 2 n.s 43.0 Weakly correlated
511 HUERS-P2-int 2 n.s 43.0 Weakly correlated
512 L1P4e 2 n.s 74.0 Weakly correlated
513 L2-1_Crp 2 *** 319.0 Weakly correlated
514 LTR105_Mam 2 n.s 99.0 Highly correlated
515 LTR10C 2 n.s 28.9 Weakly correlated
516 LTR10D 2 n.s 28.9 Weakly correlated
517 LTR10E 2 n.s 28.9 Weakly correlated
518 LTR10F 2 n.s 28.9 Weakly correlated
519 LTR13_ 2 * 28.9 Weakly correlated
520 LTR18C 2 ** 43.0 Weakly correlated
521 LTR1E 2 n.s 43.0 Weakly correlated
522 LTR29 2 n.s 43.0 Weakly correlated
523 LTR35A 2 * 43.0 Weakly correlated
524 LTR42 2 n.s 74.0 Weakly correlated
525 LTR47A2 2 n.s 74.0 Weakly correlated
526 LTR51 2 n.s 74.0 Weakly correlated
527 LTR53-int 2 n.s 99.0 Highly correlated
528 LTR57-int 2 n.s 74.0 Weakly correlated
529 LTR5B 2 n.s 28.9 Weakly correlated
530 LTR5_Hs 2 n.s 0.0 Weakly correlated
531 LTR69 2 n.s 99.0 Highly correlated
532 LTR72B 2 n.s 74.0 Weakly correlated
533 LTR85c 2 n.s 99.0 Highly correlated
534 LTR86B1 2 n.s 99.0 Highly correlated
535 LTR9A1 2 n.s 43.0 Weakly correlated
536 LTR9D 2 n.s 43.0 Weakly correlated
537 MER11A 2 n.s 28.9 Weakly correlated
538 MER11D 2 n.s 19.6 Weakly correlated
539 MER4A 2 n.s 74.0 Weakly correlated
540 MER4C 2 n.s 74.0 Weakly correlated
541 MER4D0 2 n.s 74.0 Weakly correlated
542 MER4E 2 n.s 74.0 Weakly correlated
543 MER54A 2 n.s 87.0 Weakly correlated
544 MER54B 2 n.s 87.0 Weakly correlated
545 MER61A 2 n.s 43.0 Weakly correlated
546 MER61B 2 n.s 43.0 Weakly correlated
547 MER65A 2 n.s 74.0 Weakly correlated
548 MER67A 2 n.s 99.0 Highly correlated
549 MER67C 2 n.s 99.0 Highly correlated
550 MER70B 2 n.s 87.0 Weakly correlated
551 MER72B 2 n.s 43.0 Weakly correlated
552 MER74B 2 n.s 99.0 Highly correlated
553 MER83B-int 2 n.s 99.0 Highly correlated
554 MER84 2 n.s 43.0 Weakly correlated
555 MER87B 2 n.s 74.0 Weakly correlated
556 MER92-int 2 n.s 99.0 Highly correlated
557 MER92B 2 n.s 99.0 Highly correlated
558 MLT-int 2 n.s 99.0 Highly correlated
559 MLT1A1-int 2 n.s 87.0 Weakly correlated
560 MLT1E3-int 2 * 99.0 Highly correlated
561 MLT1K-int 2 * 99.0 Highly correlated
562 MSTA1 2 n.s 74.0 Weakly correlated
563 MSTD-int 2 n.s 74.0 Weakly correlated
564 MamGypLTR2b 2 n.s 99.0 Highly correlated
565 PRIMA4-int 2 n.s 74.0 Weakly correlated
566 PRIMA41-int 2 n.s 74.0 Weakly correlated
567 SVA_E 2 n.s 0.0 Weakly correlated
568 AluYa8 1 n.s 15.2 Weakly correlated
569 AluYe5 1 n.s 74.0 Weakly correlated
570 AluYg6 1 n.s 15.2 Weakly correlated
571 AluYh3a3 1 n.s 15.2 Weakly correlated
572 AluYi6_4d 1 n.s 0.0 Weakly correlated
573 AluYk2 1 n.s 19.6 Weakly correlated
574 CR1-12_AMi 1 n.s 319.0 Weakly correlated
575 HERV15-int 1 n.s 28.9 Weakly correlated
576 HERV1_LTRe 1 * 43.0 Weakly correlated
577 HERV35I-int 1 n.s 43.0 Weakly correlated
578 HERV9N-int 1 n.s 19.6 Weakly correlated
579 HERVE-int 1 n.s 19.6 Weakly correlated
580 HERVFH21-int 1 n.s 28.9 Weakly correlated
581 HERVIP10B3-int 1 n.s 28.9 Weakly correlated
582 HERVK3-int 1 n.s 28.9 Weakly correlated
583 Harlequin-int 1 n.s 74.0 Weakly correlated
584 L1M3b 1 n.s 99.0 Highly correlated
585 L1M3d 1 n.s 99.0 Highly correlated
586 LOR1b 1 n.s 74.0 Weakly correlated
587 LTR1 1 n.s 43.0 Weakly correlated
588 LTR102_Mam 1 n.s 99.0 Highly correlated
589 LTR103b_Mam 1 n.s 99.0 Highly correlated
590 LTR10B 1 n.s 28.9 Weakly correlated
591 LTR10B1 1 n.s 28.9 Weakly correlated
592 LTR10B2 1 n.s 28.9 Weakly correlated
593 LTR12B 1 n.s 28.9 Weakly correlated
594 LTR14C 1 n.s 28.9 Weakly correlated
595 LTR19-int 1 n.s 43.0 Weakly correlated
596 LTR19C 1 n.s 43.0 Weakly correlated
597 LTR1A1 1 n.s 43.0 Weakly correlated
598 LTR1F 1 n.s 43.0 Weakly correlated
599 LTR1F1 1 n.s 43.0 Weakly correlated
600 LTR22B 1 n.s 28.9 Weakly correlated
601 LTR22C2 1 n.s 28.9 Weakly correlated
602 LTR24B 1 n.s 74.0 Weakly correlated
603 LTR25 1 n.s 43.0 Weakly correlated
604 LTR34 1 n.s 74.0 Weakly correlated
605 LTR35 1 n.s 43.0 Weakly correlated
606 LTR35B 1 n.s 43.0 Weakly correlated
607 LTR37-int 1 n.s 99.0 Highly correlated
608 LTR38C 1 n.s 74.0 Weakly correlated
609 LTR39-int 1 n.s 43.0 Weakly correlated
610 LTR46 1 n.s 43.0 Weakly correlated
611 LTR47B3 1 n.s 74.0 Weakly correlated
612 LTR52-int 1 n.s 99.0 Highly correlated
613 LTR53B 1 n.s 99.0 Highly correlated
614 LTR54B 1 n.s 74.0 Weakly correlated
615 LTR59 1 n.s 43.0 Weakly correlated
616 LTR60 1 * 43.0 Weakly correlated
617 LTR6A 1 n.s 28.9 Weakly correlated
618 LTR71B 1 n.s 43.0 Weakly correlated
619 LTR72 1 n.s 74.0 Weakly correlated
620 LTR80A 1 n.s 99.0 Highly correlated
621 LTR80B 1 n.s 99.0 Highly correlated
622 LTR86A2 1 n.s 99.0 Highly correlated
623 LTR90B 1 n.s 99.0 Highly correlated
624 LTR91 1 n.s 99.0 Highly correlated
625 LTR9C 1 n.s 43.0 Weakly correlated
626 MER110A 1 n.s 99.0 Highly correlated
627 MER34C_ 1 n.s 87.0 Weakly correlated
628 MER4B 1 n.s 74.0 Weakly correlated
629 MER4E1 1 n.s 74.0 Weakly correlated
630 MER51-int 1 n.s 43.0 Weakly correlated
631 MER51D 1 n.s 43.0 Weakly correlated
632 MER57C2 1 n.s 87.0 Weakly correlated
633 MER61D 1 n.s 43.0 Weakly correlated
634 MER65B 1 n.s 74.0 Weakly correlated
635 MER65D 1 n.s 87.0 Weakly correlated
636 MER67B 1 n.s 99.0 Highly correlated
637 MER68-int 1 n.s 99.0 Highly correlated
638 MER73 1 n.s 87.0 Weakly correlated
639 MER76 1 n.s 99.0 Highly correlated
640 MER76-int 1 n.s 99.0 Highly correlated
641 MER83B 1 n.s 43.0 Weakly correlated
642 MER89-int 1 n.s 99.0 Highly correlated
643 MER92D 1 n.s 99.0 Highly correlated
644 MLT1A0-int 1 n.s 99.0 Highly correlated
645 MLT1B-int 1 n.s 99.0 Highly correlated
646 MLT1C-int 1 n.s 94.0 Weakly correlated
647 MLT1E-int 1 ** 99.0 Highly correlated
648 MLT1G3-int 1 n.s 99.0 Highly correlated
649 MLT1H2-int 1 n.s 99.0 Highly correlated
650 MLT2E 1 n.s 99.0 Highly correlated
651 MSTB2-int 1 n.s 74.0 Weakly correlated
652 MamGypLTR1d 1 n.s 99.0 Highly correlated
653 PrimLTR79 1 n.s 74.0 Weakly correlated
654 SVA_C 1 n.s 15.2 Weakly correlated
655 THE1-int 1 n.s 43.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L1MEc 352 **** 99.0 Highly correlated
2 L1PB1 296 **** 74.0 Weakly correlated
3 L1MEg 257 **** 99.0 Highly correlated
4 L1MEd 210 **** 99.0 Highly correlated
5 L1MEf 192 **** 99.0 Highly correlated
6 L1M4 191 *** 99.0 Highly correlated
7 L2a 171 n.s 99.0 Highly correlated
8 L1PA7 147 n.s 74.0 Weakly correlated
9 L1ME1 146 n.s 99.0 Highly correlated
10 L1M4b 142 **** 99.0 Highly correlated
11 L1PBa 125 **** 74.0 Weakly correlated
12 L1MDa 122 **** 99.0 Highly correlated
13 L1MB7 116 n.s 99.0 Highly correlated
14 L1PA6 109 n.s 28.9 Weakly correlated
15 L1PA4 100 n.s 19.6 Weakly correlated
16 L1M1 98 n.s 74.0 Weakly correlated
17 L2c 93 n.s 99.0 Highly correlated
18 L1PA5 92 n.s 19.6 Weakly correlated
19 L1PA13 79 n.s 74.0 Weakly correlated
20 MIRb 75 n.s 99.0 Highly correlated
21 L1MB8 74 n.s 99.0 Highly correlated
22 L1PA10 71 n.s 74.0 Weakly correlated
23 HAL1 70 n.s 99.0 Highly correlated
24 L1MCa 70 n.s 99.0 Highly correlated
25 MIR 69 n.s 99.0 Highly correlated
26 L1PA3 66 n.s 19.6 Weakly correlated
27 L2b 64 n.s 99.0 Highly correlated
28 L2 57 n.s 99.0 Highly correlated
29 L1M2 55 n.s 99.0 Highly correlated
30 L1MEi 53 **** 99.0 Highly correlated
31 L1M4a1 49 **** 99.0 Highly correlated
32 L1ME3A 46 n.s 99.0 Highly correlated
33 L1P2 45 n.s 28.9 Weakly correlated
34 L1MB5 45 n.s 99.0 Highly correlated
35 L1M4a2 43 **** 99.0 Highly correlated
36 L1ME2 43 n.s 99.0 Highly correlated
37 L1M4c 42 n.s 99.0 Highly correlated
38 L1MA3 42 n.s 74.0 Weakly correlated
39 L1PA16 41 n.s 74.0 Weakly correlated
40 L1PA15 39 n.s 74.0 Weakly correlated
41 L1MD2 37 n.s 99.0 Highly correlated
42 L1MA2 36 n.s 74.0 Weakly correlated
43 L1ME3 35 n.s 99.0 Highly correlated
44 L1PA8A 35 n.s 74.0 Weakly correlated
45 L1MD1 34 n.s 99.0 Highly correlated
46 L1PA8 34 n.s 74.0 Weakly correlated
47 L1MC1 33 n.s 99.0 Highly correlated
48 MLT1H 32 n.s 99.0 Highly correlated
49 L1PA11 30 n.s 74.0 Weakly correlated
50 L3 30 n.s 99.0 Highly correlated
51 L1MA4A 30 n.s 87.0 Weakly correlated
52 L1PBa1 29 **** 74.0 Weakly correlated
53 LTR12C 29 n.s 19.6 Weakly correlated
54 L1MCc 28 n.s 99.0 Highly correlated
55 L1PB2 27 n.s 74.0 Weakly correlated
56 L1PB3 27 n.s 74.0 Weakly correlated
57 MIRc 27 n.s 99.0 Highly correlated
58 L1M5 26 n.s 99.0 Highly correlated
59 MIR3 26 n.s 99.0 Highly correlated
60 L1MB4 25 n.s 99.0 Highly correlated
61 L1MA4 25 n.s 87.0 Weakly correlated
62 MLT1D 25 n.s 99.0 Highly correlated
63 L1MB3 25 n.s 99.0 Highly correlated
64 L1P1 24 n.s 19.6 Weakly correlated
65 L1PA17 24 n.s 74.0 Weakly correlated
66 L1PREC2 23 n.s 43.0 Weakly correlated
67 L1ME4a 22 n.s 99.0 Highly correlated
68 L1PB4 22 n.s 99.0 Highly correlated
69 L1MA9 22 n.s 99.0 Highly correlated
70 L1MC3 22 n.s 99.0 Highly correlated
71 L1PA15-16 21 n.s 74.0 Weakly correlated
72 L1P3 21 n.s 74.0 Weakly correlated
73 L1ME3B 19 n.s 99.0 Highly correlated
74 L1MC5a 18 n.s 99.0 Highly correlated
75 L1MC4 17 n.s 99.0 Highly correlated
76 MLT1K 17 n.s 99.0 Highly correlated
77 L1PA2 17 n.s 15.2 Weakly correlated
78 L1ME3Cz 16 n.s 99.0 Highly correlated
79 L1MA5 15 n.s 87.0 Weakly correlated
80 L1MA8 15 n.s 87.0 Weakly correlated
81 LTR33 15 n.s 99.0 Highly correlated
82 MLT1A0 15 n.s 99.0 Highly correlated
83 HAL1ME 14 n.s 99.0 Highly correlated
84 AluJb 14 n.s 74.0 Weakly correlated
85 ERVL-E-int 14 n.s 99.0 Highly correlated
86 L1MA1 14 n.s 74.0 Weakly correlated
87 L1MB2 14 n.s 99.0 Highly correlated
88 L1ME3E 14 n.s 99.0 Highly correlated
89 MLT1B 13 n.s 99.0 Highly correlated
90 L1ME3D 13 n.s 99.0 Highly correlated
91 L1MC5 13 n.s 99.0 Highly correlated
92 L1PA14 12 n.s 74.0 Weakly correlated
93 L1MA7 12 n.s 87.0 Weakly correlated
94 MLT1C 12 n.s 94.0 Weakly correlated
95 LTR17 12 n.s 28.9 Weakly correlated
96 MLT1I 12 n.s 99.0 Highly correlated
97 L1MC2 12 n.s 99.0 Highly correlated
98 L1ME2z 12 n.s 99.0 Highly correlated
99 L1ME3G 11 n.s 99.0 Highly correlated
100 L1PBb 11 * 74.0 Weakly correlated
101 L1MD 11 n.s 99.0 Highly correlated
102 HERVL-int 10 n.s 74.0 Weakly correlated
103 MamRTE1 10 n.s 99.0 Highly correlated
104 ERVL-B4-int 10 n.s 99.0 Highly correlated
105 MLT1F2 10 n.s 99.0 Highly correlated
106 THE1B 10 n.s 43.0 Weakly correlated
107 L1MB1 10 n.s 99.0 Highly correlated
108 L1MC4a 10 n.s 99.0 Highly correlated
109 L1MEh 10 n.s 99.0 Highly correlated
110 L1MCb 10 n.s 99.0 Highly correlated
111 L1ME4b 9 n.s 99.0 Highly correlated
112 L1M2c 9 n.s 87.0 Weakly correlated
113 MLT1J 9 n.s 99.0 Highly correlated
114 ERV3-16A3_I-int 8 n.s 99.0 Highly correlated
115 L1MEj 8 n.s 99.0 Highly correlated
116 L1MA5A 8 n.s 87.0 Weakly correlated
117 MLT1F 8 n.s 99.0 Highly correlated
118 L1M2a 8 n.s 87.0 Weakly correlated
119 THE1B-int 7 n.s 43.0 Weakly correlated
120 L1MC 7 n.s 99.0 Highly correlated
121 L1MD3 7 n.s 99.0 Highly correlated
122 LTR2 7 n.s 28.9 Weakly correlated
123 L1HS 7 n.s 8.6 Weakly correlated
124 L1M3f 7 n.s 87.0 Weakly correlated
125 MamSINE1 7 n.s 99.0 Highly correlated
126 L1MA6 6 n.s 87.0 Weakly correlated
127 MER57A1 6 n.s 43.0 Weakly correlated
128 MLT1E3 6 n.s 99.0 Highly correlated
129 MLT1L 6 n.s 99.0 Highly correlated
130 L1MDb 6 n.s 99.0 Highly correlated
131 L1M3c 6 n.s 99.0 Highly correlated
132 L3b 6 n.s 99.0 Highly correlated
133 AluJo 6 n.s 74.0 Weakly correlated
134 L1ME4c 6 n.s 99.0 Highly correlated
135 L1ME5 6 n.s 99.0 Highly correlated
136 L1MA10 5 n.s 99.0 Highly correlated
137 LTR16A2 5 n.s 99.0 Highly correlated
138 LTR50 5 n.s 99.0 Highly correlated
139 MLT1G3 5 n.s 99.0 Highly correlated
140 MLT1J1 5 n.s 99.0 Highly correlated
141 ERVL-int 5 n.s 99.0 Highly correlated
142 L1M3 5 n.s 99.0 Highly correlated
143 L1PA12 5 n.s 74.0 Weakly correlated
144 L2-1_AMi 5 n.s 319.0 Weakly correlated
145 L1M8 5 n.s 99.0 Highly correlated
146 MLT1F1 5 n.s 99.0 Highly correlated
147 L1P4a 5 n.s 74.0 Weakly correlated
148 LTR16A 5 n.s 99.0 Highly correlated
149 MER66B 5 n.s 43.0 Weakly correlated
150 MLT1H2 5 n.s 99.0 Highly correlated
151 MLT1E2 5 n.s 99.0 Highly correlated
152 HAL1b 4 n.s 99.0 Highly correlated
153 LTR12D 4 n.s 19.6 Weakly correlated
154 LTR49-int 4 n.s 74.0 Weakly correlated
155 MLT1E1A 4 n.s 99.0 Highly correlated
156 MER4D1 4 n.s 74.0 Weakly correlated
157 MLT2B1 4 n.s 99.0 Highly correlated
158 AluSz 4 n.s 74.0 Weakly correlated
159 HERVK9-int 4 n.s 28.9 Weakly correlated
160 LTR26 4 n.s 74.0 Weakly correlated
161 LTR8 4 n.s 43.0 Weakly correlated
162 MER21A 4 n.s 74.0 Weakly correlated
163 MLT1A 4 n.s 99.0 Highly correlated
164 AluJr 4 n.s 74.0 Weakly correlated
165 L1M2a1 4 * 79.0 Weakly correlated
166 L1M3de 4 n.s 99.0 Highly correlated
167 AmnSINE1 4 n.s 319.0 Weakly correlated
168 L1ME3C 4 n.s 99.0 Highly correlated
169 L1MEb 3 n.s 99.0 Highly correlated
170 LTR85b 3 n.s 99.0 Highly correlated
171 MLT1A1 3 n.s 87.0 Weakly correlated
172 LTR13A 3 n.s 28.9 Weakly correlated
173 LTR33B 3 n.s 99.0 Highly correlated
174 MER66C 3 n.s 43.0 Weakly correlated
175 THE1D 3 n.s 43.0 Weakly correlated
176 THE1D-int 3 n.s 28.9 Weakly correlated
177 LTR40a 3 n.s 99.0 Highly correlated
178 MLT2F 3 n.s 99.0 Highly correlated
179 MamGypsy2-I 3 n.s 99.0 Highly correlated
180 L1ME3F 3 n.s 99.0 Highly correlated
181 LTR40b 3 n.s 99.0 Highly correlated
182 LTR16A1 3 n.s 99.0 Highly correlated
183 MLT1H1 3 n.s 99.0 Highly correlated
184 LTR16 3 n.s 99.0 Highly correlated
185 MLT1G1 3 n.s 99.0 Highly correlated
186 MLT1O 3 n.s 99.0 Highly correlated
187 MLT2B2 3 n.s 99.0 Highly correlated
188 THE1A-int 3 n.s 43.0 Weakly correlated
189 AluSq2 3 n.s 74.0 Weakly correlated
190 L2-3_Crp 3 n.s 431.0 Weakly correlated
191 MER39 3 n.s 74.0 Weakly correlated
192 LTR41B 3 n.s 99.0 Highly correlated
193 LTR66 3 n.s 43.0 Weakly correlated
194 FLAM_A 2 n.s 74.0 Weakly correlated
195 L4_B_Mam 2 n.s 99.0 Highly correlated
196 LTR16C 2 n.s 99.0 Highly correlated
197 LTR41 2 n.s 99.0 Highly correlated
198 MER49 2 n.s 43.0 Weakly correlated
199 MER66D 2 n.s 43.0 Weakly correlated
200 AluJr4 2 n.s 74.0 Weakly correlated
201 AluSx 2 n.s 74.0 Weakly correlated
202 HAL1M8 2 n.s 99.0 Highly correlated
203 HERVL40-int 2 n.s 99.0 Highly correlated
204 L1M3b 2 n.s 99.0 Highly correlated
205 L1M6 2 n.s 99.0 Highly correlated
206 LTR16B2 2 n.s 99.0 Highly correlated
207 LTR7 2 n.s 19.6 Weakly correlated
208 MER50 2 n.s 43.0 Weakly correlated
209 MER68 2 n.s 99.0 Highly correlated
210 MER90a 2 n.s 99.0 Highly correlated
211 MLT1J2 2 n.s 99.0 Highly correlated
212 MamRep605 2 n.s 99.0 Highly correlated
213 HERVK14-int 2 n.s 28.9 Weakly correlated
214 LTR12 2 n.s 28.9 Weakly correlated
215 LTR16E1 2 n.s 99.0 Highly correlated
216 LTR36 2 n.s 74.0 Weakly correlated
217 LTR78B 2 n.s 99.0 Highly correlated
218 MLT1E1 2 n.s 99.0 Highly correlated
219 HERV16-int 2 n.s 99.0 Highly correlated
220 LTR54 2 n.s 74.0 Weakly correlated
221 LTR85a 2 n.s 99.0 Highly correlated
222 LTR88b 2 n.s 99.0 Highly correlated
223 MLT1D-int 2 n.s 99.0 Highly correlated
224 MLT1J-int 2 n.s 99.0 Highly correlated
225 MLT2C2 2 n.s 99.0 Highly correlated
226 LTR16E2 2 n.s 99.0 Highly correlated
227 LTR33A_ 2 n.s 99.0 Highly correlated
228 LTR67B 2 n.s 99.0 Highly correlated
229 LTR82A 2 n.s 99.0 Highly correlated
230 MER34A1 2 n.s 99.0 Highly correlated
231 MER87B 2 n.s 74.0 Weakly correlated
232 L1M7 2 n.s 99.0 Highly correlated
233 L4_C_Mam 2 n.s 99.0 Highly correlated
234 MER34A 2 n.s 99.0 Highly correlated
235 MER4B-int 2 n.s 99.0 Highly correlated
236 MLT1N2 2 n.s 99.0 Highly correlated
237 MLT2B3 2 n.s 99.0 Highly correlated
238 MLT2B4 2 n.s 99.0 Highly correlated
239 MSTB 2 n.s 43.0 Weakly correlated
240 AluSx1 2 n.s 74.0 Weakly correlated
241 AluY 2 n.s 74.0 Weakly correlated
242 L1MEg2 2 n.s 99.0 Highly correlated
243 L1P4d 2 n.s 74.0 Weakly correlated
244 LFSINE_Vert 2 n.s 319.0 Weakly correlated
245 LTR12_ 2 n.s 28.9 Weakly correlated
246 LTR47A2 2 n.s 74.0 Weakly correlated
247 MER21C 2 n.s 99.0 Highly correlated
248 MER92B 2 n.s 99.0 Highly correlated
249 MSTB-int 2 n.s 43.0 Weakly correlated
250 CR1-3_Croc 2 n.s 319.0 Weakly correlated
251 MER4-int 2 n.s 74.0 Weakly correlated
252 AluYh3 1 n.s 15.2 Weakly correlated
253 CR1_Mam 1 n.s 99.0 Highly correlated
254 HERVK-int 1 n.s 28.9 Weakly correlated
255 HERVP71A-int 1 n.s 43.0 Weakly correlated
256 L5 1 n.s 99.0 Highly correlated
257 LTR2752 1 n.s 43.0 Weakly correlated
258 LTR80A 1 n.s 99.0 Highly correlated
259 LTR80B 1 n.s 99.0 Highly correlated
260 LTR8A 1 n.s 43.0 Weakly correlated
261 MER31-int 1 n.s 99.0 Highly correlated
262 MER4D 1 n.s 74.0 Weakly correlated
263 MER52C 1 n.s 74.0 Weakly correlated
264 MSTA-int 1 n.s 43.0 Weakly correlated
265 MamGypsy2-LTR 1 n.s 99.0 Highly correlated
266 MamRep1527 1 n.s 99.0 Highly correlated
267 L1M3a 1 n.s 99.0 Highly correlated
268 LTR18A 1 n.s 43.0 Weakly correlated
269 LTR1D 1 n.s 43.0 Weakly correlated
270 LTR25-int 1 n.s 43.0 Weakly correlated
271 LTR26D 1 n.s 0.0 Weakly correlated
272 LTR48B 1 n.s 74.0 Weakly correlated
273 LTR5_Hs 1 n.s 0.0 Weakly correlated
274 LTR81 1 n.s 99.0 Highly correlated
275 LTR91 1 n.s 99.0 Highly correlated
276 MER101-int 1 n.s 74.0 Weakly correlated
277 MER4A1 1 n.s 74.0 Weakly correlated
278 MER4D0 1 n.s 74.0 Weakly correlated
279 MER51-int 1 n.s 43.0 Weakly correlated
280 MER54A 1 n.s 87.0 Weakly correlated
281 MER61-int 1 n.s 43.0 Weakly correlated
282 MER90 1 n.s 99.0 Highly correlated
283 HERVH-int 1 n.s 28.9 Weakly correlated
284 HERVI-int 1 n.s 28.9 Weakly correlated
285 L1P4e 1 n.s 74.0 Weakly correlated
286 LTR104_Mam 1 n.s 99.0 Highly correlated
287 LTR24 1 n.s 74.0 Weakly correlated
288 LTR29 1 n.s 43.0 Weakly correlated
289 LTR47A 1 n.s 74.0 Weakly correlated
290 MER39B 1 n.s 74.0 Weakly correlated
291 MER41-int 1 n.s 74.0 Weakly correlated
292 MER57B2 1 n.s 43.0 Weakly correlated
293 MER70B 1 n.s 87.0 Weakly correlated
294 MLT1B-int 1 n.s 99.0 Highly correlated
295 THE1A 1 n.s 43.0 Weakly correlated
296 AluYk11 1 n.s 15.2 Weakly correlated
297 LTR26B 1 n.s 74.0 Weakly correlated
298 LTR2B 1 n.s 19.6 Weakly correlated
299 LTR49 1 n.s 74.0 Weakly correlated
300 LTR52 1 n.s 99.0 Highly correlated
301 LTR56 1 n.s 74.0 Weakly correlated
302 MER31B 1 n.s 99.0 Highly correlated
303 MER4CL34 1 n.s 43.0 Weakly correlated
304 MER57-int 1 n.s 87.0 Weakly correlated
305 MER57A-int 1 n.s 43.0 Weakly correlated
306 MER65-int 1 n.s 87.0 Weakly correlated
307 MER68B 1 n.s 99.0 Highly correlated
308 SVA_A 1 n.s 19.6 Weakly correlated
309 AluSc 1 n.s 74.0 Weakly correlated
310 AluSc8 1 n.s 74.0 Weakly correlated
311 CR1-L3A_Croc 1 n.s 319.0 Weakly correlated
312 HERVFH19-int 1 n.s 43.0 Weakly correlated
313 HERVH48-int 1 n.s 28.9 Weakly correlated
314 L1MEg1 1 n.s 99.0 Highly correlated
315 LTR1D1 1 n.s 43.0 Weakly correlated
316 LTR26C 1 n.s 0.0 Weakly correlated
317 LTR57-int 1 n.s 74.0 Weakly correlated
318 MER110 1 n.s 99.0 Highly correlated
319 MER31A 1 n.s 87.0 Weakly correlated
320 MER57B1 1 n.s 43.0 Weakly correlated
321 MER92-int 1 n.s 99.0 Highly correlated
322 MER92D 1 n.s 99.0 Highly correlated
323 MIR1_Amn 1 n.s 319.0 Weakly correlated
324 MLT1G 1 n.s 99.0 Highly correlated
325 MLT1M 1 n.s 99.0 Highly correlated
326 X7A_LINE 1 n.s 319.0 Weakly correlated
327 ERVL47-int 1 n.s 74.0 Weakly correlated
328 LTR13 1 n.s 19.6 Weakly correlated
329 LTR1E 1 n.s 43.0 Weakly correlated
330 LTR33A 1 n.s 99.0 Highly correlated
331 LTR53-int 1 n.s 99.0 Highly correlated
332 LTR78 1 n.s 99.0 Highly correlated
333 LTR7B 1 n.s 28.9 Weakly correlated
334 LTR88c 1 n.s 99.0 Highly correlated
335 LTR8B 1 n.s 43.0 Weakly correlated
336 MER21-int 1 n.s 99.0 Highly correlated
337 MER50B 1 n.s 43.0 Weakly correlated
338 MER67B 1 n.s 99.0 Highly correlated
339 MLT1A1-int 1 n.s 87.0 Weakly correlated
340 MLT1F-int 1 n.s 99.0 Highly correlated
341 MLT1I-int 1 n.s 99.0 Highly correlated
342 MLT1J2-int 1 n.s 99.0 Highly correlated
343 MLT2E 1 n.s 99.0 Highly correlated
344 AluSz6 1 n.s 74.0 Weakly correlated
345 L1P4 1 n.s 74.0 Weakly correlated
346 L4_A_Mam 1 n.s 99.0 Highly correlated
347 LTR16D 1 n.s 99.0 Highly correlated
348 LTR1B1 1 n.s 43.0 Weakly correlated
349 LTR37A 1 n.s 99.0 Highly correlated
350 LTR40c 1 n.s 99.0 Highly correlated
351 LTR53 1 n.s 99.0 Highly correlated
352 LTR79 1 n.s 99.0 Highly correlated
353 MER66-int 1 n.s 43.0 Weakly correlated
354 MER74A 1 n.s 99.0 Highly correlated
355 MSTA 1 n.s 43.0 Weakly correlated
356 MamGypLTR3 1 n.s 99.0 Highly correlated
357 AluSx3 1 n.s 74.0 Weakly correlated
358 ERV24B_Prim-int 1 n.s 74.0 Weakly correlated
359 HERVIP10B3-int 1 n.s 28.9 Weakly correlated
360 L1M3e 1 n.s 99.0 Highly correlated
361 LTR101_Mam 1 n.s 99.0 Highly correlated
362 LTR10A 1 n.s 28.9 Weakly correlated
363 LTR19B 1 n.s 43.0 Weakly correlated
364 LTR1C1 1 n.s 43.0 Weakly correlated
365 LTR1F 1 n.s 43.0 Weakly correlated
366 LTR68 1 n.s 99.0 Highly correlated
367 LTR86A1 1 n.s 99.0 Highly correlated
368 MER34C2 1 n.s 74.0 Weakly correlated
369 MER57E1 1 n.s 87.0 Weakly correlated
370 MER72B 1 n.s 43.0 Weakly correlated
371 MLT1J1-int 1 n.s 99.0 Highly correlated
372 MamGypLTR3a 1 n.s 99.0 Highly correlated
373 PABL_B-int 1 n.s 74.0 Weakly correlated
374 Penelope1_Vert 1 n.s 319.0 Weakly correlated
375 X6B_LINE 1 n.s 99.0 Highly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ERV3-16A3_I-INT 99.0 Highly correlated
2 ERVL-B4-INT 99.0 Highly correlated
3 ERVL-E-INT 99.0 Highly correlated
4 HAL1 99.0 Highly correlated
5 HAL1ME 99.0 Highly correlated
6 HERVL-INT 74.0 Weakly correlated
7 L1M1 74.0 Weakly correlated
8 L1M2 99.0 Highly correlated
9 L1M2C 87.0 Weakly correlated
10 L1M3F 87.0 Weakly correlated
11 L1M4 99.0 Highly correlated
12 L1M4A1 99.0 Highly correlated
13 L1M4A2 99.0 Highly correlated
14 L1M4B 99.0 Highly correlated
15 L1M4C 99.0 Highly correlated
16 L1M5 99.0 Highly correlated
17 L1MA5A 87.0 Weakly correlated
18 L1MB2 99.0 Highly correlated
19 L1MB7 99.0 Highly correlated
20 L1MC 99.0 Highly correlated
21 L1MC4 99.0 Highly correlated
22 L1MC4A 99.0 Highly correlated
23 L1MC5 99.0 Highly correlated
24 L1MC5A 99.0 Highly correlated
25 L1MCA 99.0 Highly correlated
26 L1MCB 99.0 Highly correlated
27 L1MD 99.0 Highly correlated
28 L1MD1 99.0 Highly correlated
29 L1MD2 99.0 Highly correlated
30 L1MD3 99.0 Highly correlated
31 L1MDA 99.0 Highly correlated
32 L1MDB 99.0 Highly correlated
33 L1ME1 99.0 Highly correlated
34 L1ME2 99.0 Highly correlated
35 L1ME2Z 99.0 Highly correlated
36 L1ME3 99.0 Highly correlated
37 L1ME3A 99.0 Highly correlated
38 L1ME3B 99.0 Highly correlated
39 L1MEC 99.0 Highly correlated
40 L1MED 99.0 Highly correlated
41 L1MEF 99.0 Highly correlated
42 L1MEG 99.0 Highly correlated
43 L1MEH 99.0 Highly correlated
44 L1MEI 99.0 Highly correlated
45 L1MEJ 99.0 Highly correlated
46 L1P1 19.6 Weakly correlated
47 L1P2 28.9 Weakly correlated
48 L1P3 74.0 Weakly correlated
49 L1PA14 74.0 Weakly correlated
50 L1PA15-16 74.0 Weakly correlated
51 L1PA16 74.0 Weakly correlated
52 L1PA17 74.0 Weakly correlated
53 L1PA6 28.9 Weakly correlated
54 L1PA7 74.0 Weakly correlated
55 L1PA8 74.0 Weakly correlated
56 L1PB4 99.0 Highly correlated
57 L1PBA 74.0 Weakly correlated
58 L1PREC2 43.0 Weakly correlated
59 L3 99.0 Highly correlated
60 L3B 99.0 Highly correlated
61 LTR12C 19.6 Weakly correlated
62 MLT1C 94.0 Weakly correlated
63 MLT1H 99.0 Highly correlated
64 MLT1J 99.0 Highly correlated
65 MAMRTE1 99.0 Highly correlated