ZRdb KZFP & Repeats
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Human_ZNF28

  • Protein
    Zinc finger protein 28
  • Length
    718
  • Organism
    Homo sapiens (Human)
  • Time of emergence
    28.9 Mya
  • Time of Changing in binding specificity
    28.9 Mya
  • Uniprot_ID
    P17035
  • NCBI_ID
    7576
Sequence:
MALPQGLLTFRDVAIEFSQEEWKCLDPAQRTLYRDVMLENYRNLVSLDISSKCMMKTFFSTGQGNTEAFHTGTLQRQASHHIGDFCFQKIEKDIHGFQFQWKEDETNDHAAPMTEIKELTGSTGQHDQRHAGNKHIKDQLGLSFHSHLPELHIFQPEGKIGNQVEKSINNASSVSTSQRICCRPKTHISNKYGNNSLHSSLLTQKRNVHMREKSFQCIESGKSFNCSSLLKKHQITHLEEKQCKCDVYGKVFNQKRYLACHRRSHIDEKPYKCNECGKIFGHNTSLFLHKALHTADKPYECEECDKVFSRKSHLETHKIIYTGGKPYKCKVCDKAFTCNSYLAKHTIIHTGEKPYKCNECGKVFNRLSTLARHRRLHTGEKPYECEECEKVFSRKSHLERHKRIHTGEKPYKCKVCDKAFAYNSYLAKHSIIHTGEKPYKCNECGKVFNQQSTLARHHRLHTAEKPYKCEECDKVFRCKSHLERHRRIHTGEKPYKCKVCDKAFRSDSCLTEHQRVHTGEKPYMCNECGKVFSTKANLACHHKLHTAEKPYKCEECEKVFSRKSHMERHRRIHTGEKPYKCKVCDKAFRRDSHLAQHQRVHTGEKPYKCNECGKTFRQTSSLIIHRRLHTGEKPYKCNECGKTFSQMSSLVYHHRLHSGEKPYKCNECGKVFNQQAHLAQHQRVHTGEKPYKCNECGKTFSQMSNLVYHHRLHSGEKP
Domain KRAB, ZF, and degenerated ZF domains of KZFPs. :
...
# Domain name Pos
1 KRAB 8..81
2 dec2h2 215..237
3 dec2h2 243..265
4 C2h2 271..293
5 dec2h2 299..321
6 C2h2 327..349
7 C2h2 355..377
8 C2h2 383..405
9 C2h2 411..433
10 C2h2 439..461
11 C2h2 467..489
12 C2h2 495..517
13 C2h2 523..545
14 C2h2 551..573
15 C2h2 579..601
16 C2h2 607..629
17 C2h2 635..657
18 C2h2 663..685
19 C2h2 691..713
Gene Ontology Annotation The Gene Ontology (GO) describes knowledge of the biological domain based on three aspects: Molecular function, Biological process, and Cellular component. :
# Type TERM
1 Cellular Component nucleus
2 Molecular Function DNA-binding transcription factor activity, RNA polymerase II-specific
3 Molecular Function metal ion binding
4 Molecular Function RNA polymerase II cis-regulatory region sequence-specific DNA binding
5 Biological Process regulation of transcription by RNA polymerase II
Is there ChIP-seq data Is there any ChIP-seq data available for these KZFPs in the Cistrome database? :
Yes
Motif(meme-ChIP) DNA binding motifs of KZFPs obtained using meme-ChIP and mapped using pylogo. :
Forward:
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Reverse:
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequences on the genome. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 L2a 213 ** 99.0 Weakly correlated
2 MSTA 202 **** 43.0 Moderately correlated
3 THE1B 190 **** 43.0 Moderately correlated
4 SVA_D 186 **** 15.2 Weakly correlated
5 MIRb 168 * 99.0 Weakly correlated
6 AluY 165 ** 74.0 Weakly correlated
7 AluJb 150 n.s 74.0 Weakly correlated
8 L2c 139 * 99.0 Weakly correlated
9 AluSx1 138 n.s 74.0 Weakly correlated
10 L2b 127 **** 99.0 Weakly correlated
11 THE1D 123 **** 43.0 Moderately correlated
12 MIR 121 n.s 99.0 Weakly correlated
13 AluSx 118 n.s 74.0 Weakly correlated
14 AluSz 117 n.s 74.0 Weakly correlated
15 THE1B-int 93 **** 43.0 Moderately correlated
16 HERVK9-int 90 **** 28.9 Highly correlated
17 MIR3 87 **** 99.0 Weakly correlated
18 AluJr 84 n.s 74.0 Weakly correlated
19 MIRc 83 *** 99.0 Weakly correlated
20 SVA_A 81 **** 19.6 Weakly correlated
21 AluJo 72 n.s 74.0 Weakly correlated
22 AluSq2 66 n.s 74.0 Weakly correlated
23 THE1C 66 **** 43.0 Moderately correlated
24 L1PA3 62 n.s 19.6 Weakly correlated
25 MLT1C 61 **** 94.0 Weakly correlated
26 SVA_F 58 **** 0.0 Weakly correlated
27 L2 57 n.s 99.0 Weakly correlated
28 AluSp 52 n.s 74.0 Weakly correlated
29 LTR14 46 **** 28.9 Highly correlated
30 MER9a3 46 **** 28.9 Highly correlated
31 AluSz6 45 n.s 74.0 Weakly correlated
32 L1PB1 45 n.s 74.0 Weakly correlated
33 AluSc 44 n.s 74.0 Weakly correlated
34 L1PA4 43 n.s 19.6 Weakly correlated
35 AluSg 42 n.s 74.0 Weakly correlated
36 AluSx3 39 n.s 74.0 Weakly correlated
37 SVA_B 37 **** 15.2 Weakly correlated
38 L1PA2 36 n.s 15.2 Weakly correlated
39 MER21C 36 **** 99.0 Weakly correlated
40 THE1C-int 36 **** 43.0 Moderately correlated
41 THE1A 35 **** 43.0 Moderately correlated
42 SVA_C 34 **** 15.2 Weakly correlated
43 MER52A 33 **** 74.0 Weakly correlated
44 THE1D-int 33 **** 28.9 Highly correlated
45 HAL1 32 n.s 99.0 Weakly correlated
46 L1ME3A 32 n.s 99.0 Weakly correlated
47 MLT1J 32 **** 99.0 Weakly correlated
48 HERVK22-int 31 **** 43.0 Moderately correlated
49 HERVK3-int 31 **** 28.9 Highly correlated
50 LTR12C 31 *** 19.6 Weakly correlated
51 MLT1A0 31 n.s 99.0 Weakly correlated
52 AluSc8 29 n.s 74.0 Weakly correlated
53 MLT1D 27 n.s 99.0 Weakly correlated
54 FLAM_C 26 *** 74.0 Weakly correlated
55 L1ME1 26 n.s 99.0 Weakly correlated
56 L1PA7 26 n.s 74.0 Weakly correlated
57 L1MC3 25 n.s 99.0 Weakly correlated
58 L3 25 n.s 99.0 Weakly correlated
59 MSTA-int 24 ** 43.0 Moderately correlated
60 FLAM_A 23 **** 74.0 Weakly correlated
61 HERVL18-int 23 **** 43.0 Moderately correlated
62 L1PA13 23 n.s 74.0 Weakly correlated
63 L1PA6 23 n.s 28.9 Highly correlated
64 LTR28B 23 **** 43.0 Moderately correlated
65 MSTB 23 ** 43.0 Moderately correlated
66 AluSq 22 n.s 74.0 Weakly correlated
67 L1ME3B 22 ** 99.0 Weakly correlated
68 THE1A-int 22 **** 43.0 Moderately correlated
69 L1PA15 21 n.s 74.0 Weakly correlated
70 L1PA5 21 n.s 19.6 Weakly correlated
71 MLT1K 20 n.s 99.0 Weakly correlated
72 L1M4 19 n.s 99.0 Weakly correlated
73 L1M5 19 n.s 99.0 Weakly correlated
74 L1MC1 19 n.s 99.0 Weakly correlated
75 L1PA16 19 n.s 74.0 Weakly correlated
76 MLT1B 19 n.s 99.0 Weakly correlated
77 L1MDa 18 n.s 99.0 Weakly correlated
78 MLT2B4 18 **** 99.0 Weakly correlated
79 L1MC4 17 n.s 99.0 Weakly correlated
80 LTR14C 17 **** 28.9 Highly correlated
81 LTR28 17 **** 43.0 Moderately correlated
82 LTR17 16 **** 28.9 Highly correlated
83 LTR33 16 * 99.0 Weakly correlated
84 AluSx4 15 n.s 74.0 Weakly correlated
85 HERVK14C-int 15 **** 28.9 Highly correlated
86 L1MB3 15 n.s 99.0 Weakly correlated
87 L1MC5a 15 n.s 99.0 Weakly correlated
88 L1ME4b 15 n.s 99.0 Weakly correlated
89 LTR2C 15 **** 19.6 Weakly correlated
90 MLT1A 15 n.s 99.0 Weakly correlated
91 MLT1L 15 n.s 99.0 Weakly correlated
92 HERVH-int 14 n.s 28.9 Highly correlated
93 HERVK14-int 14 **** 28.9 Highly correlated
94 L1MB7 14 n.s 99.0 Weakly correlated
95 L1MC4a 14 n.s 99.0 Weakly correlated
96 L1MC5 14 n.s 99.0 Weakly correlated
97 L1ME4a 14 n.s 99.0 Weakly correlated
98 L1PA10 14 n.s 74.0 Weakly correlated
99 LTR78B 14 **** 99.0 Weakly correlated
100 ERV3-16A3_I-int 13 n.s 99.0 Weakly correlated
101 L1MA9 13 n.s 99.0 Weakly correlated
102 MER61A 13 **** 43.0 Moderately correlated
103 MIR1_Amn 13 *** 319.0 Weakly correlated
104 L1PREC2 12 n.s 43.0 Moderately correlated
105 LTR39 12 **** 43.0 Moderately correlated
106 AluJr4 11 n.s 74.0 Weakly correlated
107 AluSg7 11 n.s 74.0 Weakly correlated
108 L1M1 11 n.s 74.0 Weakly correlated
109 L1MEf 11 n.s 99.0 Weakly correlated
110 L1PA17 11 n.s 74.0 Weakly correlated
111 LTR16C 11 n.s 99.0 Weakly correlated
112 LTR1D 11 **** 43.0 Moderately correlated
113 LTR5_Hs 11 **** 0.0 Weakly correlated
114 MLT1N2 11 ** 99.0 Weakly correlated
115 MLT2B1 11 * 99.0 Weakly correlated
116 FRAM 10 ** 74.0 Weakly correlated
117 HERV9NC-int 10 *** 19.6 Weakly correlated
118 L1M4b 10 n.s 99.0 Weakly correlated
119 L1MEd 10 n.s 99.0 Weakly correlated
120 L1MEg 10 n.s 99.0 Weakly correlated
121 L1PB4 10 n.s 99.0 Weakly correlated
122 LTR16A1 10 *** 99.0 Weakly correlated
123 MER4-int 10 n.s 74.0 Weakly correlated
124 MLT1F2 10 n.s 99.0 Weakly correlated
125 Alu 9 **** 74.0 Weakly correlated
126 AluSc5 9 n.s 74.0 Weakly correlated
127 AluYj4 9 ** 0.0 Weakly correlated
128 AluYm1 9 n.s 19.6 Weakly correlated
129 HERV17-int 9 ** 28.9 Highly correlated
130 HERV9-int 9 ** 28.9 Highly correlated
131 HERVK-int 9 *** 28.9 Highly correlated
132 L1MDb 9 *** 99.0 Weakly correlated
133 L1P1 9 n.s 19.6 Weakly correlated
134 L1P3 9 n.s 74.0 Weakly correlated
135 LTR12F 9 **** 28.9 Highly correlated
136 LTR13 9 **** 19.6 Weakly correlated
137 LTR28C 9 **** 43.0 Moderately correlated
138 MER21A 9 ** 74.0 Weakly correlated
139 MER21B 9 * 99.0 Weakly correlated
140 MER4B-int 9 ** 99.0 Weakly correlated
141 MER4CL34 9 **** 43.0 Moderately correlated
142 MER52D 9 *** 74.0 Weakly correlated
143 MLT1A1 9 n.s 87.0 Weakly correlated
144 ERVL-B4-int 8 n.s 99.0 Weakly correlated
145 HERV16-int 8 ** 99.0 Weakly correlated
146 L1MA3 8 n.s 74.0 Weakly correlated
147 L1MB5 8 n.s 99.0 Weakly correlated
148 L1MD2 8 n.s 99.0 Weakly correlated
149 L1ME3G 8 n.s 99.0 Weakly correlated
150 L1PA12 8 n.s 74.0 Weakly correlated
151 L1PA8 8 n.s 74.0 Weakly correlated
152 LTR3A 8 **** 28.9 Highly correlated
153 MER41B 8 * 74.0 Weakly correlated
154 MLT1G1 8 n.s 99.0 Weakly correlated
155 AluYa5 7 n.s 15.2 Weakly correlated
156 LTR14A 7 **** 28.9 Highly correlated
157 LTR1B1 7 **** 43.0 Moderately correlated
158 LTR78 7 n.s 99.0 Weakly correlated
159 LTR9 7 *** 43.0 Moderately correlated
160 MLT1E2 7 n.s 99.0 Weakly correlated
161 MLT1H 7 n.s 99.0 Weakly correlated
162 MLT1I 7 n.s 99.0 Weakly correlated
163 ERVL-E-int 6 n.s 99.0 Weakly correlated
164 FAM 6 * 87.0 Weakly correlated
165 HAL1ME 6 n.s 99.0 Weakly correlated
166 HERVE-int 6 * 19.6 Weakly correlated
167 L1HS 6 n.s 8.6 Weakly correlated
168 L1M2 6 n.s 99.0 Weakly correlated
169 L1MA4A 6 n.s 87.0 Weakly correlated
170 L1MB2 6 n.s 99.0 Weakly correlated
171 L1MB8 6 n.s 99.0 Weakly correlated
172 L1MC2 6 n.s 99.0 Weakly correlated
173 L1MCc 6 n.s 99.0 Weakly correlated
174 L1MD1 6 n.s 99.0 Weakly correlated
175 L1ME2 6 n.s 99.0 Weakly correlated
176 L1MEc 6 n.s 99.0 Weakly correlated
177 L1PA14 6 n.s 74.0 Weakly correlated
178 LTR10D 6 **** 28.9 Highly correlated
179 LTR12 6 ** 28.9 Highly correlated
180 LTR16E2 6 * 99.0 Weakly correlated
181 LTR27B 6 **** 43.0 Moderately correlated
182 LTR50 6 * 99.0 Weakly correlated
183 LTR8A 6 * 43.0 Moderately correlated
184 MER39 6 n.s 74.0 Weakly correlated
185 MER50 6 n.s 43.0 Moderately correlated
186 SVA_E 6 *** 0.0 Weakly correlated
187 ERV3-16A3_LTR 5 ** 99.0 Weakly correlated
188 HERVIP10F-int 5 * 28.9 Highly correlated
189 HERVK13-int 5 **** 19.6 Weakly correlated
190 HUERS-P2-int 5 *** 43.0 Moderately correlated
191 L1M2a 5 * 87.0 Weakly correlated
192 L1M4c 5 n.s 99.0 Weakly correlated
193 L1MB1 5 n.s 99.0 Weakly correlated
194 L1MB4 5 n.s 99.0 Weakly correlated
195 L1MD3 5 n.s 99.0 Weakly correlated
196 L1P4 5 n.s 74.0 Weakly correlated
197 L1PA11 5 n.s 74.0 Weakly correlated
198 L4_A_Mam 5 n.s 99.0 Weakly correlated
199 L4_C_Mam 5 n.s 99.0 Weakly correlated
200 LTR105_Mam 5 **** 99.0 Weakly correlated
201 LTR10A 5 **** 28.9 Highly correlated
202 LTR14B 5 *** 28.9 Highly correlated
203 LTR1A2 5 * 43.0 Moderately correlated
204 LTR33A 5 * 99.0 Weakly correlated
205 LTR3B_ 5 **** 28.9 Highly correlated
206 LTR9B 5 ** 43.0 Moderately correlated
207 LTR9D 5 ** 43.0 Moderately correlated
208 MER4B 5 n.s 74.0 Weakly correlated
209 MER50-int 5 ** 43.0 Moderately correlated
210 MER61-int 5 n.s 43.0 Moderately correlated
211 MER89 5 * 99.0 Weakly correlated
212 MER90a 5 ** 99.0 Weakly correlated
213 MLT1J2 5 n.s 99.0 Weakly correlated
214 MLT1M 5 ** 99.0 Weakly correlated
215 MSTB1 5 n.s 74.0 Weakly correlated
216 MamSINE1 5 n.s 99.0 Weakly correlated
217 AluYc 4 n.s 74.0 Weakly correlated
218 AluYk3 4 * 19.6 Weakly correlated
219 HERV30-int 4 *** 28.9 Highly correlated
220 HERVIP10B3-int 4 * 28.9 Highly correlated
221 HERVKC4-int 4 **** 28.9 Highly correlated
222 HERVL-int 4 n.s 74.0 Weakly correlated
223 Harlequin-int 4 n.s 74.0 Weakly correlated
224 L1M3 4 n.s 99.0 Weakly correlated
225 L1M6 4 n.s 99.0 Weakly correlated
226 L1M8 4 n.s 99.0 Weakly correlated
227 L1MA2 4 n.s 74.0 Weakly correlated
228 L1MA4 4 n.s 87.0 Weakly correlated
229 L1MA6 4 n.s 87.0 Weakly correlated
230 L1MA8 4 n.s 87.0 Weakly correlated
231 L1MCa 4 n.s 99.0 Weakly correlated
232 L1ME3 4 n.s 99.0 Weakly correlated
233 L1P2 4 n.s 28.9 Highly correlated
234 L1PB2 4 n.s 74.0 Weakly correlated
235 L1PBa 4 n.s 74.0 Weakly correlated
236 LTR12D 4 * 19.6 Weakly correlated
237 LTR16B 4 ** 99.0 Weakly correlated
238 LTR1F1 4 *** 43.0 Moderately correlated
239 LTR27C 4 **** 43.0 Moderately correlated
240 LTR3 4 **** 28.9 Highly correlated
241 LTR41 4 * 99.0 Weakly correlated
242 LTR49-int 4 n.s 74.0 Weakly correlated
243 LTR53 4 ** 99.0 Weakly correlated
244 LTR55 4 *** 99.0 Weakly correlated
245 MER11D 4 ** 19.6 Weakly correlated
246 MER39B 4 * 74.0 Weakly correlated
247 MER57A-int 4 n.s 43.0 Moderately correlated
248 MER57B2 4 * 43.0 Moderately correlated
249 MER67B 4 *** 99.0 Weakly correlated
250 MER74A 4 n.s 99.0 Weakly correlated
251 MLT1F 4 n.s 99.0 Weakly correlated
252 MLT1G 4 n.s 99.0 Weakly correlated
253 MLT1J1 4 n.s 99.0 Weakly correlated
254 MSTB-int 4 n.s 43.0 Moderately correlated
255 MSTD 4 n.s 74.0 Weakly correlated
256 PABL_B-int 4 ** 74.0 Weakly correlated
257 AluSg4 3 n.s 74.0 Weakly correlated
258 AluYe5 3 n.s 74.0 Weakly correlated
259 ERVL47-int 3 ** 74.0 Weakly correlated
260 HERV9N-int 3 n.s 19.6 Weakly correlated
261 HERVE_a-int 3 n.s 28.9 Highly correlated
262 HERVS71-int 3 n.s 28.9 Highly correlated
263 HUERS-P3-int 3 n.s 43.0 Moderately correlated
264 L1MA1 3 n.s 74.0 Weakly correlated
265 L1MA10 3 n.s 99.0 Weakly correlated
266 L1MA5 3 n.s 87.0 Weakly correlated
267 L1MA5A 3 n.s 87.0 Weakly correlated
268 L1MA7 3 n.s 87.0 Weakly correlated
269 L1ME3F 3 n.s 99.0 Weakly correlated
270 L1PA15-16 3 n.s 74.0 Weakly correlated
271 L1PA8A 3 n.s 74.0 Weakly correlated
272 L1PB 3 n.s 74.0 Weakly correlated
273 LOR1-int 3 n.s 74.0 Weakly correlated
274 LTR104_Mam 3 n.s 99.0 Weakly correlated
275 LTR16 3 n.s 99.0 Weakly correlated
276 LTR16A 3 n.s 99.0 Weakly correlated
277 LTR16A2 3 n.s 99.0 Weakly correlated
278 LTR16B1 3 n.s 99.0 Weakly correlated
279 LTR1A1 3 * 43.0 Moderately correlated
280 LTR1D1 3 * 43.0 Moderately correlated
281 LTR21A 3 **** 28.9 Highly correlated
282 LTR23 3 ** 74.0 Weakly correlated
283 LTR30 3 *** 28.9 Highly correlated
284 LTR36 3 ** 74.0 Weakly correlated
285 LTR38B 3 *** 74.0 Weakly correlated
286 LTR41B 3 * 99.0 Weakly correlated
287 LTR76 3 ** 74.0 Weakly correlated
288 LTR7B 3 * 28.9 Highly correlated
289 MER11A 3 n.s 28.9 Highly correlated
290 MER11B 3 n.s 19.6 Weakly correlated
291 MER34-int 3 ** 99.0 Weakly correlated
292 MER41-int 3 n.s 74.0 Weakly correlated
293 MER4A1 3 n.s 74.0 Weakly correlated
294 MER4C 3 * 74.0 Weakly correlated
295 MER4D 3 n.s 74.0 Weakly correlated
296 MER52-int 3 n.s 99.0 Weakly correlated
297 MER57A1 3 n.s 43.0 Moderately correlated
298 MER61B 3 ** 43.0 Moderately correlated
299 MER66B 3 n.s 43.0 Moderately correlated
300 MER68 3 n.s 99.0 Weakly correlated
301 MER84 3 ** 43.0 Moderately correlated
302 MER92B 3 * 99.0 Weakly correlated
303 MER9B 3 **** 28.9 Highly correlated
304 MLT1F1 3 n.s 99.0 Weakly correlated
305 MLT1H1 3 n.s 99.0 Weakly correlated
306 MLT1H2 3 n.s 99.0 Weakly correlated
307 MLT1O 3 n.s 99.0 Weakly correlated
308 MLT2A1 3 n.s 74.0 Weakly correlated
309 MLT2B3 3 n.s 99.0 Weakly correlated
310 MLT2B5 3 ** 87.0 Weakly correlated
311 MSTB2 3 n.s 74.0 Weakly correlated
312 MamGypLTR3 3 ** 99.0 Weakly correlated
313 MamRep605 3 n.s 99.0 Weakly correlated
314 THE1-int 3 ** 43.0 Moderately correlated
315 AluYb8 2 n.s 15.2 Weakly correlated
316 AluYh9 2 **** 15.2 Weakly correlated
317 AluYk4 2 n.s 15.2 Weakly correlated
318 HAL1M8 2 n.s 99.0 Weakly correlated
319 HERV3-int 2 n.s 28.9 Highly correlated
320 L1M3c 2 n.s 99.0 Weakly correlated
321 L1M4a1 2 n.s 99.0 Weakly correlated
322 L1MCb 2 n.s 99.0 Weakly correlated
323 L1ME3D 2 n.s 99.0 Weakly correlated
324 L1ME5 2 n.s 99.0 Weakly correlated
325 L1MEa 2 * 99.0 Weakly correlated
326 L1MEj 2 n.s 99.0 Weakly correlated
327 L1P4e 2 * 74.0 Weakly correlated
328 L1PB3 2 n.s 74.0 Weakly correlated
329 L1PBa1 2 n.s 74.0 Weakly correlated
330 L1PBb 2 n.s 74.0 Weakly correlated
331 L3b 2 n.s 99.0 Weakly correlated
332 L4_B_Mam 2 n.s 99.0 Weakly correlated
333 LFSINE_Vert 2 n.s 319.0 Weakly correlated
334 LOR1a 2 n.s 74.0 Weakly correlated
335 LTR1 2 * 43.0 Moderately correlated
336 LTR10B2 2 *** 28.9 Highly correlated
337 LTR10E 2 * 28.9 Highly correlated
338 LTR12E 2 * 19.6 Weakly correlated
339 LTR12_ 2 n.s 28.9 Highly correlated
340 LTR16B2 2 n.s 99.0 Weakly correlated
341 LTR19A 2 * 43.0 Moderately correlated
342 LTR22B1 2 ** 28.9 Highly correlated
343 LTR25-int 2 n.s 43.0 Moderately correlated
344 LTR26E 2 *** 74.0 Weakly correlated
345 LTR27D 2 * 43.0 Moderately correlated
346 LTR27E 2 * 43.0 Moderately correlated
347 LTR33A_ 2 n.s 99.0 Weakly correlated
348 LTR33B 2 n.s 99.0 Weakly correlated
349 LTR37A 2 n.s 99.0 Weakly correlated
350 LTR57-int 2 * 74.0 Weakly correlated
351 LTR5A 2 n.s 19.6 Weakly correlated
352 LTR5B 2 n.s 28.9 Highly correlated
353 LTR64 2 * 74.0 Weakly correlated
354 LTR66 2 * 43.0 Moderately correlated
355 LTR67B 2 n.s 99.0 Weakly correlated
356 LTR6B 2 ** 19.6 Weakly correlated
357 LTR7 2 n.s 19.6 Weakly correlated
358 LTR72 2 ** 74.0 Weakly correlated
359 LTR79 2 n.s 99.0 Weakly correlated
360 LTR8 2 n.s 43.0 Moderately correlated
361 LTR83 2 * 99.0 Weakly correlated
362 LTR84a 2 * 99.0 Weakly correlated
363 LTR85b 2 n.s 99.0 Weakly correlated
364 LTR88c 2 * 99.0 Weakly correlated
365 LTR89 2 n.s 99.0 Weakly correlated
366 LTR8B 2 n.s 43.0 Moderately correlated
367 MER101B 2 ** 87.0 Weakly correlated
368 MER110-int 2 * 99.0 Weakly correlated
369 MER21-int 2 n.s 99.0 Weakly correlated
370 MER31A 2 n.s 87.0 Weakly correlated
371 MER34 2 n.s 87.0 Weakly correlated
372 MER34A 2 n.s 99.0 Weakly correlated
373 MER41A 2 n.s 74.0 Weakly correlated
374 MER41D 2 * 74.0 Weakly correlated
375 MER4D1 2 n.s 74.0 Weakly correlated
376 MER50B 2 n.s 43.0 Moderately correlated
377 MER51B 2 n.s 43.0 Moderately correlated
378 MER57-int 2 n.s 87.0 Weakly correlated
379 MER57E1 2 * 87.0 Weakly correlated
380 MER57E3 2 ** 74.0 Weakly correlated
381 MER61D 2 ** 43.0 Moderately correlated
382 MER61E 2 * 43.0 Moderately correlated
383 MER65A 2 n.s 74.0 Weakly correlated
384 MER66-int 2 n.s 43.0 Moderately correlated
385 MER72 2 n.s 43.0 Moderately correlated
386 MER72B 2 ** 43.0 Moderately correlated
387 MER74C 2 ** 99.0 Weakly correlated
388 MER76 2 n.s 99.0 Weakly correlated
389 MER77B 2 n.s 99.0 Weakly correlated
390 MER83B 2 *** 43.0 Moderately correlated
391 MER84-int 2 ** 74.0 Weakly correlated
392 MER9a1 2 * 19.6 Weakly correlated
393 MLT1C-int 2 n.s 94.0 Weakly correlated
394 MLT1E1A 2 n.s 99.0 Weakly correlated
395 MLT1E3 2 n.s 99.0 Weakly correlated
396 MLT1G1-int 2 * 99.0 Weakly correlated
397 MLT1G3 2 n.s 99.0 Weakly correlated
398 MLT1K-int 2 ** 99.0 Weakly correlated
399 MLT2A2 2 n.s 74.0 Weakly correlated
400 MLT2C2 2 n.s 99.0 Weakly correlated
401 MLT2F 2 n.s 99.0 Weakly correlated
402 MSTB1-int 2 * 74.0 Weakly correlated
403 MSTC 2 n.s 74.0 Weakly correlated
404 MSTD-int 2 n.s 74.0 Weakly correlated
405 MamGypLTR1b 2 n.s 99.0 Weakly correlated
406 PRIMA4_LTR 2 * 74.0 Weakly correlated
407 Plat_L3 2 n.s 99.0 Weakly correlated
408 AluSq10 1 n.s 74.0 Weakly correlated
409 AluSq4 1 n.s 74.0 Weakly correlated
410 AluYc3 1 n.s 74.0 Weakly correlated
411 AluYf1 1 n.s 19.6 Weakly correlated
412 AluYg6 1 n.s 15.2 Weakly correlated
413 AluYh3 1 n.s 15.2 Weakly correlated
414 AluYk11 1 n.s 15.2 Weakly correlated
415 AluYk12 1 * 15.2 Weakly correlated
416 AmnSINE1 1 n.s 319.0 Weakly correlated
417 CR1-3_Croc 1 n.s 319.0 Weakly correlated
418 CR1_Mam 1 n.s 99.0 Weakly correlated
419 ERV24B_Prim-int 1 n.s 74.0 Weakly correlated
420 HAL1b 1 n.s 99.0 Weakly correlated
421 HERV4_I-int 1 n.s 43.0 Moderately correlated
422 HERVI-int 1 n.s 28.9 Highly correlated
423 HERVIP10FH-int 1 n.s 28.9 Highly correlated
424 HERVL40-int 1 n.s 99.0 Weakly correlated
425 HERVL74-int 1 n.s 99.0 Weakly correlated
426 HUERS-P1-int 1 n.s 43.0 Moderately correlated
427 HUERS-P3b-int 1 n.s 43.0 Moderately correlated
428 L1M 1 * 74.0 Weakly correlated
429 L1M2a1 1 n.s 79.0 Weakly correlated
430 L1M3e 1 n.s 99.0 Weakly correlated
431 L1M3f 1 n.s 87.0 Weakly correlated
432 L1M4a2 1 n.s 99.0 Weakly correlated
433 L1M6B 1 n.s 99.0 Weakly correlated
434 L1M7 1 n.s 99.0 Weakly correlated
435 L1MD 1 n.s 99.0 Weakly correlated
436 L1ME3C 1 n.s 99.0 Weakly correlated
437 L1ME3Cz 1 n.s 99.0 Weakly correlated
438 L1ME3E 1 n.s 99.0 Weakly correlated
439 L1ME4c 1 n.s 99.0 Weakly correlated
440 L1MEg1 1 n.s 99.0 Weakly correlated
441 L1MEh 1 n.s 99.0 Weakly correlated
442 L1P3b 1 * 43.0 Moderately correlated
443 L1P4b 1 n.s 74.0 Weakly correlated
444 L1P4d 1 n.s 74.0 Weakly correlated
445 L2-1_AMi 1 n.s 319.0 Weakly correlated
446 L2-3_Crp 1 n.s 431.0 Weakly correlated
447 LTR101_Mam 1 n.s 99.0 Weakly correlated
448 LTR103b_Mam 1 n.s 99.0 Weakly correlated
449 LTR106_Mam 1 n.s 99.0 Weakly correlated
450 LTR107_Mam 1 n.s 99.0 Weakly correlated
451 LTR10G 1 * 28.9 Highly correlated
452 LTR16D 1 n.s 99.0 Weakly correlated
453 LTR16D2 1 n.s 99.0 Weakly correlated
454 LTR18A 1 * 43.0 Moderately correlated
455 LTR18B 1 n.s 43.0 Moderately correlated
456 LTR18C 1 ** 43.0 Moderately correlated
457 LTR19-int 1 n.s 43.0 Moderately correlated
458 LTR1B 1 n.s 43.0 Moderately correlated
459 LTR1E 1 n.s 43.0 Moderately correlated
460 LTR1F2 1 * 43.0 Moderately correlated
461 LTR22A 1 * 43.0 Moderately correlated
462 LTR22E 1 * 28.9 Highly correlated
463 LTR24C 1 n.s 74.0 Weakly correlated
464 LTR25 1 n.s 43.0 Moderately correlated
465 LTR26 1 n.s 74.0 Weakly correlated
466 LTR26C 1 n.s 0.0 Weakly correlated
467 LTR2752 1 n.s 43.0 Moderately correlated
468 LTR2B 1 n.s 19.6 Weakly correlated
469 LTR32 1 n.s 43.0 Moderately correlated
470 LTR35 1 * 43.0 Moderately correlated
471 LTR38 1 n.s 74.0 Weakly correlated
472 LTR38-int 1 * 74.0 Weakly correlated
473 LTR39-int 1 * 43.0 Moderately correlated
474 LTR3B 1 ** 28.9 Highly correlated
475 LTR4 1 * 28.9 Highly correlated
476 LTR40A1 1 n.s 99.0 Weakly correlated
477 LTR40a 1 n.s 99.0 Weakly correlated
478 LTR40c 1 n.s 99.0 Weakly correlated
479 LTR42 1 n.s 74.0 Weakly correlated
480 LTR45C 1 n.s 99.0 Weakly correlated
481 LTR47A 1 n.s 74.0 Weakly correlated
482 LTR47B4 1 * 74.0 Weakly correlated
483 LTR52 1 n.s 99.0 Weakly correlated
484 LTR53-int 1 n.s 99.0 Weakly correlated
485 LTR53B 1 * 99.0 Weakly correlated
486 LTR56 1 n.s 74.0 Weakly correlated
487 LTR57 1 n.s 74.0 Weakly correlated
488 LTR61 1 * 43.0 Moderately correlated
489 LTR62 1 n.s 74.0 Weakly correlated
490 LTR6A 1 n.s 28.9 Highly correlated
491 LTR81A 1 n.s 99.0 Weakly correlated
492 LTR81B 1 n.s 99.0 Weakly correlated
493 LTR81C 1 n.s 99.0 Weakly correlated
494 LTR85a 1 n.s 99.0 Weakly correlated
495 LTR85c 1 n.s 99.0 Weakly correlated
496 LTR87 1 n.s 99.0 Weakly correlated
497 LTR88a 1 n.s 99.0 Weakly correlated
498 LTR88b 1 n.s 99.0 Weakly correlated
499 LTR90B 1 * 99.0 Weakly correlated
500 MER11C 1 n.s 19.6 Weakly correlated
501 MER31B 1 n.s 99.0 Weakly correlated
502 MER34A1 1 n.s 99.0 Weakly correlated
503 MER34B-int 1 n.s 99.0 Weakly correlated
504 MER34C2 1 n.s 74.0 Weakly correlated
505 MER41C 1 n.s 74.0 Weakly correlated
506 MER41G 1 * 74.0 Weakly correlated
507 MER49 1 n.s 43.0 Moderately correlated
508 MER51A 1 n.s 43.0 Moderately correlated
509 MER51C 1 * 43.0 Moderately correlated
510 MER51D 1 * 43.0 Moderately correlated
511 MER54A 1 n.s 87.0 Weakly correlated
512 MER57B1 1 n.s 43.0 Moderately correlated
513 MER57F 1 n.s 74.0 Weakly correlated
514 MER61C 1 n.s 43.0 Moderately correlated
515 MER65C 1 n.s 74.0 Weakly correlated
516 MER66D 1 * 43.0 Moderately correlated
517 MER67C 1 n.s 99.0 Weakly correlated
518 MER70A 1 n.s 87.0 Weakly correlated
519 MER74B 1 n.s 99.0 Weakly correlated
520 MER77 1 n.s 99.0 Weakly correlated
521 MER83B-int 1 n.s 99.0 Weakly correlated
522 MER87 1 * 43.0 Moderately correlated
523 MER88 1 * 99.0 Weakly correlated
524 MER90 1 n.s 99.0 Weakly correlated
525 MER92-int 1 n.s 99.0 Weakly correlated
526 MER9a2 1 n.s 19.6 Weakly correlated
527 MLT-int 1 n.s 99.0 Weakly correlated
528 MLT1-int 1 * 99.0 Weakly correlated
529 MLT1A0-int 1 n.s 99.0 Weakly correlated
530 MLT1A1-int 1 n.s 87.0 Weakly correlated
531 MLT1D-int 1 n.s 99.0 Weakly correlated
532 MLT1E-int 1 *** 99.0 Weakly correlated
533 MLT1F1-int 1 n.s 99.0 Weakly correlated
534 MLT1H-int 1 n.s 99.0 Weakly correlated
535 MLT1H1-int 1 n.s 99.0 Weakly correlated
536 MLT1I-int 1 n.s 99.0 Weakly correlated
537 MLT1N2-int 1 ** 99.0 Weakly correlated
538 MLT2B2 1 n.s 99.0 Weakly correlated
539 MLT2C1 1 n.s 99.0 Weakly correlated
540 MLT2D 1 n.s 99.0 Weakly correlated
541 MST-int 1 n.s 74.0 Weakly correlated
542 MamGypLTR1c 1 n.s 99.0 Weakly correlated
543 MamGypLTR2b 1 n.s 99.0 Weakly correlated
544 MamRTE1 1 n.s 99.0 Weakly correlated
545 PRIMA4-int 1 n.s 74.0 Weakly correlated
546 PrimLTR79 1 ** 74.0 Weakly correlated
547 X6A_LINE 1 n.s 99.0 Weakly correlated
548 X6B_LINE 1 n.s 99.0 Weakly correlated
549 X7A_LINE 1 n.s 319.0 Weakly correlated
Motif in Repeats The motif of KZFPs identified by the MEME-ChIP is present in repeats sequences. :
# Repeats name Record number Significance Emergence time(Mya) Time correlation with KZFP
1 SVA_D 163 **** 15.2 Weakly correlated
2 SVA_A 71 **** 19.6 Weakly correlated
3 L2a 52 n.s 99.0 Weakly correlated
4 SVA_F 45 **** 0.0 Weakly correlated
5 L1PA3 44 n.s 19.6 Weakly correlated
6 LTR14 40 **** 28.9 Highly correlated
7 L2b 37 n.s 99.0 Weakly correlated
8 SVA_B 33 **** 15.2 Weakly correlated
9 SVA_C 32 **** 15.2 Weakly correlated
10 L1PA4 29 n.s 19.6 Weakly correlated
11 L2c 27 n.s 99.0 Weakly correlated
12 HERVK9-int 24 **** 28.9 Highly correlated
13 MER52A 22 **** 74.0 Weakly correlated
14 L1PA2 21 n.s 15.2 Weakly correlated
15 LTR28B 20 **** 43.0 Moderately correlated
16 MER21C 20 ** 99.0 Weakly correlated
17 MIRb 20 n.s 99.0 Weakly correlated
18 L2 16 n.s 99.0 Weakly correlated
19 MSTA 16 n.s 43.0 Moderately correlated
20 AluSx1 16 n.s 74.0 Weakly correlated
21 LTR28 15 **** 43.0 Moderately correlated
22 LTR14C 15 **** 28.9 Highly correlated
23 LTR12C 14 n.s 19.6 Weakly correlated
24 MIR 14 n.s 99.0 Weakly correlated
25 AluJb 14 n.s 74.0 Weakly correlated
26 L1ME3A 13 n.s 99.0 Weakly correlated
27 L1PA5 13 n.s 19.6 Weakly correlated
28 MLT2B4 13 ** 99.0 Weakly correlated
29 HERVL18-int 12 **** 43.0 Moderately correlated
30 AluSx 12 n.s 74.0 Weakly correlated
31 L1MDa 11 n.s 99.0 Weakly correlated
32 HERVK22-int 10 **** 43.0 Moderately correlated
33 MSTB 10 n.s 43.0 Moderately correlated
34 THE1B-int 10 n.s 43.0 Moderately correlated
35 MLT2B1 10 * 99.0 Weakly correlated
36 LTR1D 10 **** 43.0 Moderately correlated
37 THE1D 10 n.s 43.0 Moderately correlated
38 L1ME3B 9 n.s 99.0 Weakly correlated
39 MIR3 9 n.s 99.0 Weakly correlated
40 L1MC3 8 n.s 99.0 Weakly correlated
41 L1PA13 8 n.s 74.0 Weakly correlated
42 L1PB1 8 n.s 74.0 Weakly correlated
43 HERV9-int 8 * 28.9 Highly correlated
44 AluSq2 8 n.s 74.0 Weakly correlated
45 HERV9NC-int 8 ** 19.6 Weakly correlated
46 THE1B 8 n.s 43.0 Moderately correlated
47 LTR28C 7 **** 43.0 Moderately correlated
48 AluSz 7 n.s 74.0 Weakly correlated
49 MLT1K 7 n.s 99.0 Weakly correlated
50 L1PA15 7 n.s 74.0 Weakly correlated
51 MIRc 7 n.s 99.0 Weakly correlated
52 HERVK3-int 7 *** 28.9 Highly correlated
53 L1PA16 7 n.s 74.0 Weakly correlated
54 L1M1 7 n.s 74.0 Weakly correlated
55 L1MC4 7 n.s 99.0 Weakly correlated
56 LTR33 7 n.s 99.0 Weakly correlated
57 L1MC4a 6 n.s 99.0 Weakly correlated
58 MLT1J 6 n.s 99.0 Weakly correlated
59 MLT1A0 6 n.s 99.0 Weakly correlated
60 LTR10D 6 **** 28.9 Highly correlated
61 AluJo 6 n.s 74.0 Weakly correlated
62 AluY 6 n.s 74.0 Weakly correlated
63 THE1A-int 6 n.s 43.0 Moderately correlated
64 THE1C-int 6 n.s 43.0 Moderately correlated
65 THE1D-int 6 n.s 28.9 Highly correlated
66 MER52D 6 * 74.0 Weakly correlated
67 L1HS 6 n.s 8.6 Weakly correlated
68 LTR9 6 ** 43.0 Moderately correlated
69 L1M4b 5 n.s 99.0 Weakly correlated
70 AluSx3 5 n.s 74.0 Weakly correlated
71 MER89 5 * 99.0 Weakly correlated
72 SVA_E 5 ** 0.0 Weakly correlated
73 AluJr 5 n.s 74.0 Weakly correlated
74 MLT1D 5 n.s 99.0 Weakly correlated
75 THE1C 5 n.s 43.0 Moderately correlated
76 HERVH-int 5 n.s 28.9 Highly correlated
77 LTR3A 5 **** 28.9 Highly correlated
78 MLT1N2 5 n.s 99.0 Weakly correlated
79 HAL1 5 n.s 99.0 Weakly correlated
80 LTR27B 5 **** 43.0 Moderately correlated
81 LTR9D 5 ** 43.0 Moderately correlated
82 MER21B 5 n.s 99.0 Weakly correlated
83 L1PA7 4 n.s 74.0 Weakly correlated
84 MLT1L 4 n.s 99.0 Weakly correlated
85 LTR53 4 ** 99.0 Weakly correlated
86 MLT1A 4 n.s 99.0 Weakly correlated
87 L1PA6 4 n.s 28.9 Highly correlated
88 L1PREC2 4 n.s 43.0 Moderately correlated
89 L1MA3 4 n.s 74.0 Weakly correlated
90 L1ME1 4 n.s 99.0 Weakly correlated
91 MER4B-int 4 n.s 99.0 Weakly correlated
92 LTR5_Hs 4 n.s 0.0 Weakly correlated
93 AluSp 4 n.s 74.0 Weakly correlated
94 HERVIP10F-int 4 n.s 28.9 Highly correlated
95 AluSc 4 n.s 74.0 Weakly correlated
96 L1P1 4 n.s 19.6 Weakly correlated
97 LTR1A2 4 n.s 43.0 Moderately correlated
98 MSTA-int 4 n.s 43.0 Moderately correlated
99 L1PA17 4 n.s 74.0 Weakly correlated
100 L3 4 n.s 99.0 Weakly correlated
101 HERV30-int 3 ** 28.9 Highly correlated
102 L1M2a 3 n.s 87.0 Weakly correlated
103 L1ME2 3 n.s 99.0 Weakly correlated
104 LTR12F 3 * 28.9 Highly correlated
105 LTR1D1 3 * 43.0 Moderately correlated
106 ERV3-16A3_LTR 3 * 99.0 Weakly correlated
107 FLAM_C 3 n.s 74.0 Weakly correlated
108 MLT1C 3 n.s 94.0 Weakly correlated
109 MER90a 3 n.s 99.0 Weakly correlated
110 HERV17-int 3 n.s 28.9 Highly correlated
111 MLT1I 3 n.s 99.0 Weakly correlated
112 L1MC5a 3 n.s 99.0 Weakly correlated
113 LTR39 3 n.s 43.0 Moderately correlated
114 MER11D 3 * 19.6 Weakly correlated
115 MER84 3 ** 43.0 Moderately correlated
116 HERV9N-int 3 n.s 19.6 Weakly correlated
117 L1MA2 3 n.s 74.0 Weakly correlated
118 L1PA10 3 n.s 74.0 Weakly correlated
119 LTR16B 3 * 99.0 Weakly correlated
120 MER21A 3 n.s 74.0 Weakly correlated
121 MLT1B 3 n.s 99.0 Weakly correlated
122 ERV3-16A3_I-int 3 n.s 99.0 Weakly correlated
123 HERVK14C-int 3 ** 28.9 Highly correlated
124 L1M4 3 n.s 99.0 Weakly correlated
125 LTR16E2 3 n.s 99.0 Weakly correlated
126 LTR78B 3 n.s 99.0 Weakly correlated
127 MER50-int 3 n.s 43.0 Moderately correlated
128 LTR16C 2 n.s 99.0 Weakly correlated
129 LTR17 2 n.s 28.9 Highly correlated
130 MSTD-int 2 n.s 74.0 Weakly correlated
131 L1MA4 2 n.s 87.0 Weakly correlated
132 MER11A 2 n.s 28.9 Highly correlated
133 L1MA9 2 n.s 99.0 Weakly correlated
134 L1MD1 2 n.s 99.0 Weakly correlated
135 L1ME3G 2 n.s 99.0 Weakly correlated
136 LTR16A 2 n.s 99.0 Weakly correlated
137 LTR57-int 2 * 74.0 Weakly correlated
138 MER52-int 2 n.s 99.0 Weakly correlated
139 AluSz6 2 n.s 74.0 Weakly correlated
140 L1M5 2 n.s 99.0 Weakly correlated
141 L1PBa 2 n.s 74.0 Weakly correlated
142 L1PBa1 2 n.s 74.0 Weakly correlated
143 LTR12D 2 n.s 19.6 Weakly correlated
144 LTR13 2 n.s 19.6 Weakly correlated
145 LTR1B1 2 * 43.0 Moderately correlated
146 LTR33A 2 n.s 99.0 Weakly correlated
147 LTR50 2 n.s 99.0 Weakly correlated
148 MER21-int 2 n.s 99.0 Weakly correlated
149 MER41B 2 n.s 74.0 Weakly correlated
150 MLT1H1 2 n.s 99.0 Weakly correlated
151 AluJr4 2 n.s 74.0 Weakly correlated
152 L1M3c 2 n.s 99.0 Weakly correlated
153 L1MB7 2 n.s 99.0 Weakly correlated
154 L1MD2 2 n.s 99.0 Weakly correlated
155 LTR38B 2 ** 74.0 Weakly correlated
156 MER57B2 2 n.s 43.0 Moderately correlated
157 MLT1H 2 n.s 99.0 Weakly correlated
158 MLT1J1 2 n.s 99.0 Weakly correlated
159 MSTB2 2 n.s 74.0 Weakly correlated
160 FRAM 2 n.s 74.0 Weakly correlated
161 HERVS71-int 2 n.s 28.9 Highly correlated
162 LTR16A1 2 n.s 99.0 Weakly correlated
163 LTR27C 2 ** 43.0 Moderately correlated
164 MER9a1 2 * 19.6 Weakly correlated
165 MLT1A1 2 n.s 87.0 Weakly correlated
166 MLT1G1 2 n.s 99.0 Weakly correlated
167 AluSg 2 n.s 74.0 Weakly correlated
168 AluYm1 2 n.s 19.6 Weakly correlated
169 L1M2 2 n.s 99.0 Weakly correlated
170 LTR105_Mam 2 * 99.0 Weakly correlated
171 LTR16B1 2 n.s 99.0 Weakly correlated
172 LTR5A 2 n.s 19.6 Weakly correlated
173 MER39 2 n.s 74.0 Weakly correlated
174 HERVIP10B3-int 2 n.s 28.9 Highly correlated
175 L1MCa 2 n.s 99.0 Weakly correlated
176 MER34-int 2 * 99.0 Weakly correlated
177 MER57A1 2 n.s 43.0 Moderately correlated
178 MER74A 2 n.s 99.0 Weakly correlated
179 MLT1M 2 n.s 99.0 Weakly correlated
180 MSTB1 2 n.s 74.0 Weakly correlated
181 HERV16-int 1 n.s 99.0 Weakly correlated
182 HERVL40-int 1 n.s 99.0 Weakly correlated
183 L1M3f 1 n.s 87.0 Weakly correlated
184 L1MC5 1 n.s 99.0 Weakly correlated
185 L1ME3E 1 n.s 99.0 Weakly correlated
186 L1P2 1 n.s 28.9 Highly correlated
187 L1P3b 1 * 43.0 Moderately correlated
188 LTR72 1 * 74.0 Weakly correlated
189 LTR83 1 n.s 99.0 Weakly correlated
190 MER39B 1 n.s 74.0 Weakly correlated
191 MER61-int 1 n.s 43.0 Moderately correlated
192 MER66B 1 n.s 43.0 Moderately correlated
193 MER77 1 n.s 99.0 Weakly correlated
194 MIR1_Amn 1 n.s 319.0 Weakly correlated
195 MLT2B2 1 n.s 99.0 Weakly correlated
196 ERVL-E-int 1 n.s 99.0 Weakly correlated
197 L1MEg 1 n.s 99.0 Weakly correlated
198 LTR103b_Mam 1 n.s 99.0 Weakly correlated
199 LTR12 1 n.s 28.9 Highly correlated
200 LTR12_ 1 n.s 28.9 Highly correlated
201 LTR49-int 1 n.s 74.0 Weakly correlated
202 LTR8 1 n.s 43.0 Moderately correlated
203 MER110-int 1 n.s 99.0 Weakly correlated
204 MER4D 1 n.s 74.0 Weakly correlated
205 MER67B 1 n.s 99.0 Weakly correlated
206 MSTD 1 n.s 74.0 Weakly correlated
207 PABL_B-int 1 n.s 74.0 Weakly correlated
208 AluSc8 1 n.s 74.0 Weakly correlated
209 AluYj4 1 n.s 0.0 Weakly correlated
210 HERVIP10FH-int 1 n.s 28.9 Highly correlated
211 HUERS-P2-int 1 n.s 43.0 Moderately correlated
212 L1MA8 1 n.s 87.0 Weakly correlated
213 L1MC2 1 n.s 99.0 Weakly correlated
214 L4_A_Mam 1 n.s 99.0 Weakly correlated
215 LTR10A 1 n.s 28.9 Highly correlated
216 LTR16 1 n.s 99.0 Weakly correlated
217 LTR21A 1 * 28.9 Highly correlated
218 LTR25 1 n.s 43.0 Moderately correlated
219 LTR36 1 n.s 74.0 Weakly correlated
220 LTR47A 1 n.s 74.0 Weakly correlated
221 LTR52 1 n.s 99.0 Weakly correlated
222 LTR5B 1 n.s 28.9 Highly correlated
223 LTR64 1 n.s 74.0 Weakly correlated
224 MER74C 1 * 99.0 Weakly correlated
225 MER83B 1 * 43.0 Moderately correlated
226 X7A_LINE 1 n.s 319.0 Weakly correlated
227 L1PB2 1 n.s 74.0 Weakly correlated
228 LOR1a 1 n.s 74.0 Weakly correlated
229 LTR1A1 1 n.s 43.0 Moderately correlated
230 LTR1F2 1 * 43.0 Moderately correlated
231 LTR33B 1 n.s 99.0 Weakly correlated
232 LTR8A 1 n.s 43.0 Moderately correlated
233 MER4B 1 n.s 74.0 Weakly correlated
234 MLT1-int 1 * 99.0 Weakly correlated
235 MSTB1-int 1 n.s 74.0 Weakly correlated
236 AluSg7 1 n.s 74.0 Weakly correlated
237 AluYc 1 n.s 74.0 Weakly correlated
238 L1M2a1 1 n.s 79.0 Weakly correlated
239 L1MA4A 1 n.s 87.0 Weakly correlated
240 L1MD3 1 n.s 99.0 Weakly correlated
241 L1ME4b 1 n.s 99.0 Weakly correlated
242 L1MEd 1 n.s 99.0 Weakly correlated
243 L2-3_Crp 1 n.s 431.0 Weakly correlated
244 LTR104_Mam 1 n.s 99.0 Weakly correlated
245 LTR1E 1 n.s 43.0 Moderately correlated
246 LTR27E 1 n.s 43.0 Moderately correlated
247 MER41-int 1 n.s 74.0 Weakly correlated
248 MER50 1 n.s 43.0 Moderately correlated
249 MER70A 1 n.s 87.0 Weakly correlated
250 MER84-int 1 n.s 74.0 Weakly correlated
251 MLT1N2-int 1 ** 99.0 Weakly correlated
252 THE1-int 1 n.s 43.0 Moderately correlated
253 Alu 1 n.s 74.0 Weakly correlated
254 AluSq 1 n.s 74.0 Weakly correlated
255 ERV24B_Prim-int 1 n.s 74.0 Weakly correlated
256 Harlequin-int 1 n.s 74.0 Weakly correlated
257 L1M8 1 n.s 99.0 Weakly correlated
258 L1MB5 1 n.s 99.0 Weakly correlated
259 L1MDb 1 n.s 99.0 Weakly correlated
260 L1P4b 1 n.s 74.0 Weakly correlated
261 LTR19-int 1 n.s 43.0 Moderately correlated
262 LTR1F1 1 n.s 43.0 Moderately correlated
263 LTR23 1 n.s 74.0 Weakly correlated
264 LTR26E 1 * 74.0 Weakly correlated
265 LTR9B 1 n.s 43.0 Moderately correlated
266 MER34 1 n.s 87.0 Weakly correlated
267 MER83B-int 1 n.s 99.0 Weakly correlated
268 MLT1E-int 1 *** 99.0 Weakly correlated
269 MLT1O 1 n.s 99.0 Weakly correlated
270 MLT2B3 1 n.s 99.0 Weakly correlated
271 MLT2F 1 n.s 99.0 Weakly correlated
272 PRIMA4_LTR 1 n.s 74.0 Weakly correlated
273 AluSg4 1 n.s 74.0 Weakly correlated
274 HUERS-P1-int 1 n.s 43.0 Moderately correlated
275 L1M4c 1 n.s 99.0 Weakly correlated
276 L1MB3 1 n.s 99.0 Weakly correlated
277 L1MCb 1 n.s 99.0 Weakly correlated
278 L1MCc 1 n.s 99.0 Weakly correlated
279 L1ME4a 1 n.s 99.0 Weakly correlated
280 L1MEf 1 n.s 99.0 Weakly correlated
281 L2-1_AMi 1 n.s 319.0 Weakly correlated
282 LTR16B2 1 n.s 99.0 Weakly correlated
283 LTR16D2 1 n.s 99.0 Weakly correlated
284 LTR78 1 n.s 99.0 Weakly correlated
285 LTR88c 1 n.s 99.0 Weakly correlated
286 MER11B 1 n.s 19.6 Weakly correlated
287 MER11C 1 n.s 19.6 Weakly correlated
288 MER41G 1 * 74.0 Weakly correlated
289 MER4A1 1 n.s 74.0 Weakly correlated
290 MER4CL34 1 n.s 43.0 Moderately correlated
291 MER68 1 n.s 99.0 Weakly correlated
292 MLT1E2 1 n.s 99.0 Weakly correlated
293 MLT1F2 1 n.s 99.0 Weakly correlated
294 MST-int 1 n.s 74.0 Weakly correlated
295 MamRep605 1 n.s 99.0 Weakly correlated
296 THE1A 1 n.s 43.0 Moderately correlated
297 AluSc5 1 n.s 74.0 Weakly correlated
298 AluSx4 1 n.s 74.0 Weakly correlated
299 FLAM_A 1 n.s 74.0 Weakly correlated
300 HERVE_a-int 1 n.s 28.9 Highly correlated
301 HERVK14-int 1 n.s 28.9 Highly correlated
302 L1MA5A 1 n.s 87.0 Weakly correlated
303 L1P4e 1 n.s 74.0 Weakly correlated
304 L1PA14 1 n.s 74.0 Weakly correlated
305 L1PB4 1 n.s 99.0 Weakly correlated
306 LTR12E 1 n.s 19.6 Weakly correlated
307 LTR26 1 n.s 74.0 Weakly correlated
308 LTR33A_ 1 n.s 99.0 Weakly correlated
309 LTR41 1 n.s 99.0 Weakly correlated
310 LTR61 1 * 43.0 Moderately correlated
311 LTR67B 1 n.s 99.0 Weakly correlated
312 LTR85c 1 n.s 99.0 Weakly correlated
313 MER4-int 1 n.s 74.0 Weakly correlated
314 MLT1G 1 n.s 99.0 Weakly correlated
Motif in Repeats Consensus The motif of KZFPs identified by MEME-ChIP analysis can be utilized to locate the corresponding region within the consensus sequences of repeats. :
# Repeats name Emergence time(Mya) Time correlation with KZFP
1 ALUJO 74.0 Weakly correlated
2 ALUSX 74.0 Weakly correlated
3 ALUSX1 74.0 Weakly correlated
4 ALUSZ 74.0 Weakly correlated
5 ALUY 74.0 Weakly correlated
6 HERV9-INT 28.9 Highly correlated
7 HERV9NC-INT 19.6 Weakly correlated
8 HERVK22-INT 43.0 Moderately correlated
9 HERVK9-INT 28.9 Highly correlated
10 HERVL18-INT 43.0 Moderately correlated
11 L1M1 74.0 Weakly correlated
12 L1MC3 99.0 Weakly correlated
13 L1MC4 99.0 Weakly correlated
14 L1MDA 99.0 Weakly correlated
15 L1ME3A 99.0 Weakly correlated
16 L1ME3B 99.0 Weakly correlated
17 L1PA16 74.0 Weakly correlated
18 LTR12C 19.6 Weakly correlated
19 LTR14 28.9 Highly correlated
20 LTR14C 28.9 Highly correlated
21 LTR28 43.0 Moderately correlated
22 LTR28C 43.0 Moderately correlated
23 LTR33 99.0 Weakly correlated
24 MER52A 74.0 Weakly correlated
25 MER52D 74.0 Weakly correlated
26 MLT1J 99.0 Weakly correlated
27 MLT2B1 99.0 Weakly correlated
28 MLT2B4 99.0 Weakly correlated
29 SVA_D 15.2 Weakly correlated
30 THE1D-INT 28.9 Highly correlated